Functional clusters

Information

  • Type Gene Ontology
  • Description large ribosomal subunit

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Amborella trichopoda AmTr_v1.0_scaffold00013 3 CH_atr_110 5 21 0.00000030136
Eragrostis curvula Contig4 3 CH_ecu_857 4 37 0.000837268
Magnolia biondii Chr11 3 CH_mbi_115 6 18 0.000000000429493
Phyllostachys edulis hic_scaffold_23 3 CH_ped_134 4 4 0.0000000594292
Sorghum bicolor Chr07 3 CH_sbi_253 3 4 0.0000474761
Secale cereale GWHASIY00000005 3 CH_sce_400 4 14 0.0000147536
Spirodela polyrhiza pseudo24 3 CH_spo_107 5 33 0.0000123093
Saccharum spontaneum Chr7C 3 CH_ssp_898 3 4 0.000428576
Amborella trichopoda AmTr_v1.0_scaffold00013 4 CH_atr_110 5 21 0.00000030136
Eragrostis curvula Contig4 4 CH_ecu_857 4 37 0.000837268
Magnolia biondii Chr11 4 CH_mbi_115 6 18 0.000000000429493
Phyllostachys edulis hic_scaffold_23 4 CH_ped_134 4 4 0.0000000594292
Sorghum bicolor Chr07 4 CH_sbi_253 3 4 0.0000474761
Secale cereale GWHASIY00000005 4 CH_sce_400 4 14 0.0000147536
Spirodela polyrhiza pseudo24 4 CH_spo_107 5 33 0.0000123093
Saccharum spontaneum Chr7C 4 CH_ssp_898 3 4 0.000428576

Available child term results

Ontology identifier Description Number of clusters
GO:0000311 plastid large ribosomal subunit 12
GO:0005762 mitochondrial large ribosomal subunit 2
GO:0022625 cytosolic large ribosomal subunit 4

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001