Functional clusters

Information

  • Type Gene Ontology
  • Description chromatin

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Allium sativum chr8 3 CH_asa_395 9 44 0.0000127656
Allium sativum chr2 3 CH_asa_413 5 6 0.0000205126
Aegilops tauschii 1D 3 CH_ata_132 5 5 0.000000274776
Aegilops tauschii 5D 3 CH_ata_417 8 79 0.000943461
Triticum aestivum Chr5B 3 CH_tae_924 9 65 0.0000223963
Triticum dicoccoides 5B 3 CH_tdi_596 8 69 0.000602146
Triticum turgidum chr5B 3 CH_ttu_248 11 76 0.000000129697
Triticum turgidum chr1A 3 CH_ttu_301 7 18 0.000000690766
Allium sativum chr8 4 CH_asa_395 9 44 0.0000127656
Allium sativum chr2 4 CH_asa_413 5 6 0.0000205126
Aegilops tauschii 1D 4 CH_ata_132 5 5 0.000000274776
Aegilops tauschii 5D 4 CH_ata_417 8 79 0.000943461
Triticum aestivum Chr5B 4 CH_tae_924 9 65 0.0000223963
Triticum dicoccoides 5B 4 CH_tdi_596 8 69 0.000602146
Triticum turgidum chr5B 4 CH_ttu_248 11 76 0.000000129697
Triticum turgidum chr1A 4 CH_ttu_301 7 18 0.000000690766

Available child term results

Ontology identifier Description Number of clusters
GO:0000786 nucleosome 168
GO:0000792 heterochromatin 2
GO:0005721 pericentric heterochromatin 8
GO:0016514 SWI/SNF complex 4
GO:0016587 Isw1 complex 4
GO:0030875 rDNA protrusion 2
GO:0031011 Ino80 complex 2
GO:0031213 RSF complex 12
GO:0035060 brahma complex 2
GO:0035101 FACT complex 26
GO:0070209 ASTRA complex 2

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001