Functional clusters
Information
- Type Gene Ontology
- Description ribosome
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Allium sativum | chr4 | 3 | CH_asa_741 | 5 | 7 | 0.000548157 |
| Allium sativum | chr8 | 3 | CH_asa_810 | 7 | 22 | 0.000725911 |
| Oryza sativa ssp. indica | Chr8 | 3 | CH_osaindica_288 | 4 | 4 | 0.000105182 |
| Oryza sativa ssp. indica | Chr7 | 3 | CH_osaindica_377 | 4 | 5 | 0.000522888 |
| Oryza sativa Kitaake | Chr4 | 3 | CH_osak_335 | 5 | 8 | 0.000167603 |
| Panicum hallii | Chr05 | 3 | CH_pha_432 | 4 | 5 | 0.00087961 |
| Physcomitrium patens | Chr02 | 3 | CH_ppa_12 | 8 | 9 | 0.000000000268848 |
| Secale cereale | GWHASIY00000002 | 3 | CH_sce_398 | 5 | 6 | 0.0000146183 |
| Solanum lycopersicum | SL4.0ch09 | 3 | CH_sly_144 | 8 | 12 | 0.0000000276958 |
| Solanum lycopersicum | SL4.0ch04 | 3 | CH_sly_32 | 12 | 12 | 2.3297e-18 |
| Triticum aestivum | Chr2D | 3 | CH_tae_1140 | 5 | 7 | 0.000192404 |
| Triticum aestivum | Chr2B | 3 | CH_tae_1446 | 4 | 4 | 0.000959126 |
| Triticum aestivum | Chr4D | 3 | CH_tae_716 | 7 | 13 | 0.00000142721 |
| Triticum turgidum | chr4A | 3 | CH_ttu_251 | 9 | 25 | 0.000000157071 |
| Triticum turgidum | chr6A | 3 | CH_ttu_671 | 7 | 27 | 0.00062025 |
| Zostera marina | scaffold_7 | 3 | CH_zosmarina_63 | 5 | 5 | 0.00000574498 |
| Allium sativum | chr4 | 4 | CH_asa_741 | 5 | 7 | 0.000548157 |
| Allium sativum | chr8 | 4 | CH_asa_810 | 7 | 22 | 0.000725911 |
| Oryza sativa ssp. indica | Chr8 | 4 | CH_osaindica_288 | 4 | 4 | 0.000105182 |
| Oryza sativa ssp. indica | Chr7 | 4 | CH_osaindica_377 | 4 | 5 | 0.000522888 |
| Oryza sativa Kitaake | Chr4 | 4 | CH_osak_335 | 5 | 8 | 0.000167603 |
| Panicum hallii | Chr05 | 4 | CH_pha_432 | 4 | 5 | 0.00087961 |
| Physcomitrium patens | Chr02 | 4 | CH_ppa_12 | 8 | 9 | 0.000000000268848 |
| Secale cereale | GWHASIY00000002 | 4 | CH_sce_398 | 5 | 6 | 0.0000146183 |
| Solanum lycopersicum | SL4.0ch09 | 4 | CH_sly_144 | 8 | 12 | 0.0000000276958 |
| Solanum lycopersicum | SL4.0ch04 | 4 | CH_sly_32 | 12 | 12 | 2.3297e-18 |
| Triticum aestivum | Chr2D | 4 | CH_tae_1140 | 5 | 7 | 0.000192404 |
| Triticum aestivum | Chr2B | 4 | CH_tae_1446 | 4 | 4 | 0.000959126 |
| Triticum aestivum | Chr4D | 4 | CH_tae_716 | 7 | 13 | 0.00000142721 |
| Triticum turgidum | chr4A | 4 | CH_ttu_251 | 9 | 25 | 0.000000157071 |
| Triticum turgidum | chr6A | 4 | CH_ttu_671 | 7 | 27 | 0.00062025 |
| Zostera marina | scaffold_7 | 4 | CH_zosmarina_63 | 5 | 5 | 0.00000574498 |
Available child term results
| Ontology identifier | Description | Number of clusters |
|---|---|---|
| GO:0000311 | plastid large ribosomal subunit | 12 |
| GO:0000312 | plastid small ribosomal subunit | 6 |
| GO:0000313 | organellar ribosome | 6 |
| GO:0005762 | mitochondrial large ribosomal subunit | 2 |
| GO:0005763 | mitochondrial small ribosomal subunit | 6 |
| GO:0009547 | plastid ribosome | 80 |
| GO:0015934 | large ribosomal subunit | 16 |
| GO:0022625 | cytosolic large ribosomal subunit | 4 |
| GO:0022626 | cytosolic ribosome | 2 |
| GO:0022627 | cytosolic small ribosomal subunit | 4 |
| GO:0042788 | polysomal ribosome | 2 |
| GO:0043253 | chloroplast ribosome | 2 |
| GO:0044391 | ribosomal subunit | 6 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |