Functional clusters

Information

  • Type Gene Ontology
  • Description carboxylic acid metabolic process

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Zoysia japonica ssp. nagirizaki Zjn_sc00184.1 3 CH_zjn_90 5 6 0.0000148639
Zoysia japonica ssp. nagirizaki Zjn_sc00184.1 4 CH_zjn_90 5 6 0.0000148639

Available child term results

Ontology identifier Description Number of clusters
GO:0000162 tryptophan biosynthetic process 4
GO:0001561 fatty acid alpha-oxidation 8
GO:0001676 long-chain fatty acid metabolic process 2
GO:0006065 UDP-glucuronate biosynthetic process 4
GO:0006090 pyruvate metabolic process 6
GO:0006106 fumarate metabolic process 12
GO:0006107 oxaloacetate metabolic process 8
GO:0006108 malate metabolic process 2
GO:0006418 tRNA aminoacylation for protein translation 6
GO:0006419 alanyl-tRNA aminoacylation 10
GO:0006420 arginyl-tRNA aminoacylation 4
GO:0006422 aspartyl-tRNA aminoacylation 32
GO:0006424 glutamyl-tRNA aminoacylation 8
GO:0006426 glycyl-tRNA aminoacylation 26
GO:0006427 histidyl-tRNA aminoacylation 2
GO:0006428 isoleucyl-tRNA aminoacylation 2
GO:0006429 leucyl-tRNA aminoacylation 20
GO:0006430 lysyl-tRNA aminoacylation 10
GO:0006431 methionyl-tRNA aminoacylation 8
GO:0006432 phenylalanyl-tRNA aminoacylation 4
GO:0006433 prolyl-tRNA aminoacylation 12
GO:0006434 seryl-tRNA aminoacylation 30
GO:0006435 threonyl-tRNA aminoacylation 10
GO:0006436 tryptophanyl-tRNA aminoacylation 8
GO:0006438 valyl-tRNA aminoacylation 28
GO:0006529 asparagine biosynthetic process 4
GO:0006537 glutamate biosynthetic process 6
GO:0006542 glutamine biosynthetic process 4
GO:0006559 L-phenylalanine catabolic process 6
GO:0006562 proline catabolic process 2
GO:0006564 L-serine biosynthetic process 2
GO:0006569 tryptophan catabolic process 8
GO:0006572 tyrosine catabolic process 16
GO:0006574 valine catabolic process 14
GO:0006592 ornithine biosynthetic process 4
GO:0006633 fatty acid biosynthetic process 68
GO:0006635 fatty acid beta-oxidation 2
GO:0006636 unsaturated fatty acid biosynthetic process 2
GO:0006780 uroporphyrinogen III biosynthetic process 2
GO:0009063 cellular amino acid catabolic process 2
GO:0009064 glutamine family amino acid metabolic process 2
GO:0009070 serine family amino acid biosynthetic process 2
GO:0009073 aromatic amino acid family biosynthetic process 4
GO:0009081 branched-chain amino acid metabolic process 2
GO:0009082 branched-chain amino acid biosynthetic process 4
GO:0009094 L-phenylalanine biosynthetic process 2
GO:0009095 aromatic amino acid family biosynthetic process, prephenate pathway 2
GO:0009097 isoleucine biosynthetic process 4
GO:0009423 chorismate biosynthetic process 2
GO:0009688 abscisic acid biosynthetic process 6
GO:0009697 salicylic acid biosynthetic process 58
GO:0010116 positive regulation of abscisic acid biosynthetic process 8
GO:0010133 proline catabolic process to glutamate 4
GO:0010323 negative regulation of isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway 2
GO:0010337 regulation of salicylic acid metabolic process 10
GO:0010430 fatty acid omega-oxidation 4
GO:0010597 green leaf volatile biosynthetic process 2
GO:0018901 2,4-dichlorophenoxyacetic acid metabolic process 8
GO:0019243 methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione 2
GO:0019264 glycine biosynthetic process from serine 6
GO:0019279 L-methionine biosynthetic process from L-homoserine via cystathionine 2
GO:0019346 transsulfuration 4
GO:0019450 L-cysteine catabolic process to pyruvate 36
GO:0019481 L-alanine catabolic process, by transamination 30
GO:0019509 L-methionine salvage from methylthioadenosine 2
GO:0019544 arginine catabolic process to glutamate 2
GO:0019605 butyrate metabolic process 2
GO:0019632 shikimate metabolic process 6
GO:0030418 nicotianamine biosynthetic process 28
GO:0031407 oxylipin metabolic process 8
GO:0031408 oxylipin biosynthetic process 32
GO:0032000 positive regulation of fatty acid beta-oxidation 2
GO:0033355 ascorbate glutathione cycle 10
GO:0033387 putrescine biosynthetic process from ornithine 4
GO:0033389 putrescine biosynthetic process from arginine, using agmatinase 8
GO:0033481 galacturonate biosynthetic process 2
GO:0033506 glucosinolate biosynthetic process from homomethionine 2
GO:0033539 fatty acid beta-oxidation using acyl-CoA dehydrogenase 2
GO:0033542 fatty acid beta-oxidation, unsaturated, even number 14
GO:0042183 formate catabolic process 2
GO:0042218 1-aminocyclopropane-1-carboxylate biosynthetic process 10
GO:0042758 long-chain fatty acid catabolic process 8
GO:0042759 long-chain fatty acid biosynthetic process 8
GO:0042761 very long-chain fatty acid biosynthetic process 6
GO:0045717 negative regulation of fatty acid biosynthetic process 2
GO:0045723 positive regulation of fatty acid biosynthetic process 16
GO:0046244 salicylic acid catabolic process 8
GO:0046345 abscisic acid catabolic process 8
GO:0046395 carboxylic acid catabolic process 4
GO:0046417 chorismate metabolic process 2
GO:0046459 short-chain fatty acid metabolic process 12
GO:0046656 folic acid biosynthetic process 2
GO:0051791 medium-chain fatty acid metabolic process 4
GO:0070150 mitochondrial glycyl-tRNA aminoacylation 2
GO:0070179 D-serine biosynthetic process 34
GO:0071266 'de novo' L-methionine biosynthetic process 2
GO:0080024 indolebutyric acid metabolic process 4
GO:0080142 regulation of salicylic acid biosynthetic process 6
GO:0090358 positive regulation of tryptophan metabolic process 2
GO:0090359 negative regulation of abscisic acid biosynthetic process 10
GO:0090431 alkyl caffeate ester biosynthetic process 4
GO:1901747 prephenate(2-) biosynthetic process 2
GO:1901997 negative regulation of indoleacetic acid biosynthetic process via tryptophan 6
GO:1902006 negative regulation of proline biosynthetic process 2
GO:1902609 (R)-2-hydroxy-alpha-linolenic acid biosynthetic process 2
GO:2000013 regulation of arginine biosynthetic process via ornithine 2
GO:2000082 regulation of L-ascorbic acid biosynthetic process 2
GO:2000083 negative regulation of L-ascorbic acid biosynthetic process 4
GO:2001280 positive regulation of unsaturated fatty acid biosynthetic process 2

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001