Functional clusters

Information

  • Type MapMan
  • Description Protein biosynthesis.organelle machinery

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Helianthus annuus HanXRQChr10 1 CH_han_113 9 17 0.0000000000252758
Helianthus annuus HanXRQChr01 1 CH_han_124 9 18 0.0000000000502588
Helianthus annuus HanXRQChr12 1 CH_han_288 6 10 0.000000831995
Helianthus annuus HanXRQChr05 1 CH_han_297 7 19 0.00000123438
Helianthus annuus HanXRQChr02 1 CH_han_334 5 6 0.00000372369
Helianthus annuus HanXRQChr11 1 CH_han_373 6 14 0.0000116349
Helianthus annuus HanXRQChr10 1 CH_han_59 11 23 0.0000000000000563171
Helianthus annuus HanXRQChr04 1 CH_han_609 5 11 0.000279027
Helianthus annuus HanXRQChr11 1 CH_han_610 5 11 0.000279027
Hydrangea macrophylla Hma1.2p1_0818F.1 1 CH_hma_18 6 7 0.000000000192311
Lactuca sativa Lsat_1_v8_lg_5 1 CH_lsa_179 5 5 0.0000000945404
Nicotiana tabacum Nitab4.5_0000173 1 CH_nta_124 4 6 0.000260583
Vigna mungo CM024077.1 1 CH_vmu_167 6 29 0.0000474535
Helianthus annuus HanXRQChr10 2 CH_han_113 9 17 0.0000000000252758
Helianthus annuus HanXRQChr01 2 CH_han_124 9 18 0.0000000000502588
Helianthus annuus HanXRQChr12 2 CH_han_288 6 10 0.000000831995
Helianthus annuus HanXRQChr05 2 CH_han_297 7 19 0.00000123438
Helianthus annuus HanXRQChr02 2 CH_han_334 5 6 0.00000372369
Helianthus annuus HanXRQChr11 2 CH_han_373 6 14 0.0000116349
Helianthus annuus HanXRQChr10 2 CH_han_59 11 23 0.0000000000000563171
Helianthus annuus HanXRQChr04 2 CH_han_609 5 11 0.000279027
Helianthus annuus HanXRQChr11 2 CH_han_610 5 11 0.000279027
Hydrangea macrophylla Hma1.2p1_0818F.1 2 CH_hma_18 6 7 0.000000000192311
Lactuca sativa Lsat_1_v8_lg_5 2 CH_lsa_179 5 5 0.0000000945404
Nicotiana tabacum Nitab4.5_0000173 2 CH_nta_124 4 6 0.000260583
Vigna mungo CM024077.1 2 CH_vmu_167 6 29 0.0000474535

Available child term results

Ontology identifier Description Number of clusters
17.7.1 Protein biosynthesis.organelle machinery.mitochondrial ribosome 24
17.7.1.1 Protein biosynthesis.organelle machinery.mitochondrial ribosome.large ribosomal subunit proteome 2
17.7.1.1.10 Protein biosynthesis.organelle machinery.mitochondrial ribosome.large ribosomal subunit proteome.component mtRPL10 or psRPL10 2
17.7.1.1.11 Protein biosynthesis.organelle machinery.mitochondrial ribosome.large ribosomal subunit proteome.component mtRPL11 8
17.7.1.1.12 Protein biosynthesis.organelle machinery.mitochondrial ribosome.large ribosomal subunit proteome.component mtRPL13 2
17.7.1.1.13 Protein biosynthesis.organelle machinery.mitochondrial ribosome.large ribosomal subunit proteome.component mtRPL14 12
17.7.1.1.14 Protein biosynthesis.organelle machinery.mitochondrial ribosome.large ribosomal subunit proteome.component mtRPL15 4
17.7.1.1.15 Protein biosynthesis.organelle machinery.mitochondrial ribosome.large ribosomal subunit proteome.component mtRPL16 4
17.7.1.1.16 Protein biosynthesis.organelle machinery.mitochondrial ribosome.large ribosomal subunit proteome.component mtRPL17 2
17.7.1.1.17 Protein biosynthesis.organelle machinery.mitochondrial ribosome.large ribosomal subunit proteome.component mtRPL18 2
17.7.1.1.18 Protein biosynthesis.organelle machinery.mitochondrial ribosome.large ribosomal subunit proteome.component mtRPL19 2
17.7.1.1.19 Protein biosynthesis.organelle machinery.mitochondrial ribosome.large ribosomal subunit proteome.component mtRPL20 2
17.7.1.1.2 Protein biosynthesis.organelle machinery.mitochondrial ribosome.large ribosomal subunit proteome.component mtRPL2-N-terminal 2
17.7.1.1.21 Protein biosynthesis.organelle machinery.mitochondrial ribosome.large ribosomal subunit proteome.component mtRPL22 12
17.7.1.1.22 Protein biosynthesis.organelle machinery.mitochondrial ribosome.large ribosomal subunit proteome.component mtRPL23 4
17.7.1.1.23 Protein biosynthesis.organelle machinery.mitochondrial ribosome.large ribosomal subunit proteome.component mtRPL24 4
17.7.1.1.24 Protein biosynthesis.organelle machinery.mitochondrial ribosome.large ribosomal subunit proteome.component mtRPL27 10
17.7.1.1.25 Protein biosynthesis.organelle machinery.mitochondrial ribosome.large ribosomal subunit proteome.component mtRPL28 2
17.7.1.1.26 Protein biosynthesis.organelle machinery.mitochondrial ribosome.large ribosomal subunit proteome.component mtRPL29 4
17.7.1.1.27 Protein biosynthesis.organelle machinery.mitochondrial ribosome.large ribosomal subunit proteome.component mtRPL30 9
17.7.1.1.28 Protein biosynthesis.organelle machinery.mitochondrial ribosome.large ribosomal subunit proteome.component mtRPL33 2
17.7.1.1.29 Protein biosynthesis.organelle machinery.mitochondrial ribosome.large ribosomal subunit proteome.component mtRPL36 7
17.7.1.1.5 Protein biosynthesis.organelle machinery.mitochondrial ribosome.large ribosomal subunit proteome.component mtRPL4 2
17.7.1.1.6 Protein biosynthesis.organelle machinery.mitochondrial ribosome.large ribosomal subunit proteome.component mtRPL5 4
17.7.1.1.8 Protein biosynthesis.organelle machinery.mitochondrial ribosome.large ribosomal subunit proteome.component mtRPL7/L12 4
17.7.1.1.9 Protein biosynthesis.organelle machinery.mitochondrial ribosome.large ribosomal subunit proteome.component mtRPL9 4
17.7.1.2 Protein biosynthesis.organelle machinery.mitochondrial ribosome.small ribosomal subunit proteome 6
17.7.1.2.1 Protein biosynthesis.organelle machinery.mitochondrial ribosome.small ribosomal subunit proteome.component mtRPS2 2
17.7.1.2.11 Protein biosynthesis.organelle machinery.mitochondrial ribosome.small ribosomal subunit proteome.component mtRPS13 or psRPS13 38
17.7.1.2.12 Protein biosynthesis.organelle machinery.mitochondrial ribosome.small ribosomal subunit proteome.component mtRPS14 4
17.7.1.2.13 Protein biosynthesis.organelle machinery.mitochondrial ribosome.small ribosomal subunit proteome.component mtRPS15 2
17.7.1.2.14 Protein biosynthesis.organelle machinery.mitochondrial ribosome.small ribosomal subunit proteome.component mtRPS16 3
17.7.1.2.15 Protein biosynthesis.organelle machinery.mitochondrial ribosome.small ribosomal subunit proteome.component mtRPS17 4
17.7.1.2.16 Protein biosynthesis.organelle machinery.mitochondrial ribosome.small ribosomal subunit proteome.component mtRPS18 10
17.7.1.2.17 Protein biosynthesis.organelle machinery.mitochondrial ribosome.small ribosomal subunit proteome.component mtRPS19 2
17.7.1.2.18 Protein biosynthesis.organelle machinery.mitochondrial ribosome.small ribosomal subunit proteome.component mtRPS21 or psRPS21 8
17.7.1.2.3 Protein biosynthesis.organelle machinery.mitochondrial ribosome.small ribosomal subunit proteome.component mtRPS4 2
17.7.1.2.4 Protein biosynthesis.organelle machinery.mitochondrial ribosome.small ribosomal subunit proteome.component mtRPS5 8
17.7.1.2.5 Protein biosynthesis.organelle machinery.mitochondrial ribosome.small ribosomal subunit proteome.component mtRPS6 4
17.7.1.2.6 Protein biosynthesis.organelle machinery.mitochondrial ribosome.small ribosomal subunit proteome.component mtRPS7 2
17.7.1.2.7 Protein biosynthesis.organelle machinery.mitochondrial ribosome.small ribosomal subunit proteome.component mtRPS9 2
17.7.1.2.9 Protein biosynthesis.organelle machinery.mitochondrial ribosome.small ribosomal subunit proteome.component mtRPS11 2
17.7.1.3.1 Protein biosynthesis.organelle machinery.mitochondrial ribosome.mitochondrial ribosome-associated proteins.regulatory protein (PNM1) 4
17.7.1.3.2 Protein biosynthesis.organelle machinery.mitochondrial ribosome.mitochondrial ribosome-associated proteins.regulatory protein (PPR336) 8
17.7.1.3.3 Protein biosynthesis.organelle machinery.mitochondrial ribosome.mitochondrial ribosome-associated proteins.ribosome biogenesis GTPase (SIN2) 6
17.7.2 Protein biosynthesis.organelle machinery.plastidial ribosome 122
17.7.2.1.1 Protein biosynthesis.organelle machinery.plastidial ribosome.large ribosomal subunit proteome.component psRPL1 8
17.7.2.1.10 Protein biosynthesis.organelle machinery.plastidial ribosome.large ribosomal subunit proteome.component psRPL12 26
17.7.2.1.11 Protein biosynthesis.organelle machinery.plastidial ribosome.large ribosomal subunit proteome.component psRPL13 8
17.7.2.1.15 Protein biosynthesis.organelle machinery.plastidial ribosome.large ribosomal subunit proteome.component psRPL17 10
17.7.2.1.16 Protein biosynthesis.organelle machinery.plastidial ribosome.large ribosomal subunit proteome.component psRPL18 2
17.7.2.1.17 Protein biosynthesis.organelle machinery.plastidial ribosome.large ribosomal subunit proteome.component psRPL19 2
17.7.2.1.18 Protein biosynthesis.organelle machinery.plastidial ribosome.large ribosomal subunit proteome.component psRPL20 2
17.7.2.1.19 Protein biosynthesis.organelle machinery.plastidial ribosome.large ribosomal subunit proteome.component psRPL21 2
17.7.2.1.21 Protein biosynthesis.organelle machinery.plastidial ribosome.large ribosomal subunit proteome.component psRPL23 2
17.7.2.1.24 Protein biosynthesis.organelle machinery.plastidial ribosome.large ribosomal subunit proteome.component psRPL28 2
17.7.2.1.25 Protein biosynthesis.organelle machinery.plastidial ribosome.large ribosomal subunit proteome.component psRPL29 2
17.7.2.1.26 Protein biosynthesis.organelle machinery.plastidial ribosome.large ribosomal subunit proteome.component psRPL31 4
17.7.2.1.29 Protein biosynthesis.organelle machinery.plastidial ribosome.large ribosomal subunit proteome.component psRPL34 10
17.7.2.1.30 Protein biosynthesis.organelle machinery.plastidial ribosome.large ribosomal subunit proteome.component psRPL35 4
17.7.2.1.32 Protein biosynthesis.organelle machinery.plastidial ribosome.large ribosomal subunit proteome.component psPSRP5 14
17.7.2.1.33 Protein biosynthesis.organelle machinery.plastidial ribosome.large ribosomal subunit proteome.component psPSRP6 8
17.7.2.1.4 Protein biosynthesis.organelle machinery.plastidial ribosome.large ribosomal subunit proteome.component psRPL4 4
17.7.2.1.6 Protein biosynthesis.organelle machinery.plastidial ribosome.large ribosomal subunit proteome.component psRPL6 6
17.7.2.1.7 Protein biosynthesis.organelle machinery.plastidial ribosome.large ribosomal subunit proteome.component psRPL9 4
17.7.2.1.9 Protein biosynthesis.organelle machinery.plastidial ribosome.large ribosomal subunit proteome.component psRPL11 2
17.7.2.2 Protein biosynthesis.organelle machinery.plastidial ribosome.small ribosomal subunit proteome 14
17.7.2.2.17 Protein biosynthesis.organelle machinery.plastidial ribosome.small ribosomal subunit proteome.component psRPS17 8
17.7.2.2.18 Protein biosynthesis.organelle machinery.plastidial ribosome.small ribosomal subunit proteome.component psRPS18 2
17.7.2.2.2 Protein biosynthesis.organelle machinery.plastidial ribosome.small ribosomal subunit proteome.component psRPS2 2
17.7.2.2.20 Protein biosynthesis.organelle machinery.plastidial ribosome.small ribosomal subunit proteome.component psRPS20 3
17.7.2.2.22 Protein biosynthesis.organelle machinery.plastidial ribosome.small ribosomal subunit proteome.component psPSRP2 3
17.7.2.2.23 Protein biosynthesis.organelle machinery.plastidial ribosome.small ribosomal subunit proteome.component psPSRP3 4
17.7.2.2.24 Protein biosynthesis.organelle machinery.plastidial ribosome.small ribosomal subunit proteome.component psPSRP4 2
17.7.2.2.5 Protein biosynthesis.organelle machinery.plastidial ribosome.small ribosomal subunit proteome.component psRPS5 4
17.7.2.2.6 Protein biosynthesis.organelle machinery.plastidial ribosome.small ribosomal subunit proteome.component psRPS6 6
17.7.2.2.7 Protein biosynthesis.organelle machinery.plastidial ribosome.small ribosomal subunit proteome.component psRPS7 2
17.7.2.3.1 Protein biosynthesis.organelle machinery.plastidial ribosome.plastidial ribosome-associated proteins.hibernation-promoting factor (PSRP1) 7
17.7.2.3.2 Protein biosynthesis.organelle machinery.plastidial ribosome.plastidial ribosome-associated proteins.ribosome biogenesis factor (PAC) 7
17.7.2.3.3 Protein biosynthesis.organelle machinery.plastidial ribosome.plastidial ribosome-associated proteins.ribosome biogenesis factor (CRASS) 8
17.7.2.3.4 Protein biosynthesis.organelle machinery.plastidial ribosome.plastidial ribosome-associated proteins.ribosome biogenesis factor (RsgA) 16
17.7.2.3.5 Protein biosynthesis.organelle machinery.plastidial ribosome.plastidial ribosome-associated proteins.ribosome biogenesis factor (CGL20) 6
17.7.2.3.6 Protein biosynthesis.organelle machinery.plastidial ribosome.plastidial ribosome-associated proteins.ribosome biogenesis factor (RBF1) 2
17.7.3.1 Protein biosynthesis.organelle machinery.translation initiation.methionyl-tRNA formyltransferase 8
17.7.3.2 Protein biosynthesis.organelle machinery.translation initiation.initiation factor (IF-1) 2
17.7.3.3 Protein biosynthesis.organelle machinery.translation initiation.initiation factor (IF-2) 2
17.7.3.4 Protein biosynthesis.organelle machinery.translation initiation.initiation factor (IF-3) 20
17.7.4.1 Protein biosynthesis.organelle machinery.translation elongation.elongation factor (EF-Tu) 10
17.7.4.2 Protein biosynthesis.organelle machinery.translation elongation.elongation factor (EF-Ts) 5
17.7.4.3 Protein biosynthesis.organelle machinery.translation elongation.elongation factor (EF-G) 2
17.7.4.4 Protein biosynthesis.organelle machinery.translation elongation.elongation factor (EF-P) 4
17.7.5.1 Protein biosynthesis.organelle machinery.translation termination.peptide chain release factor (PrfA) 8
17.7.5.3 Protein biosynthesis.organelle machinery.translation termination.ribosome recycling factor (RRF) 6
17.7.6.1 Protein biosynthesis.organelle machinery.peptide deformylation.formylmethionine deformylase (PDF) 4

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001