Functional clusters

Information

  • Type MapMan
  • Description Protein biosynthesis.organelle machinery.plastidial ribosome.large ribosomal subunit proteome.component psRPL12

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Arabidopsis lyrata scaffold_5 1 CH_aly_127 3 7 0.000000228698
Arabidopsis thaliana Chr3 1 CH_ath_136 3 10 0.000000147727
Brassica carinata ChrC06 1 CH_bca_207 3 3 0.0000000383844
Brassica carinata ChrC06 1 CH_bca_985 2 2 0.00059854
Brassica oleracea C7 1 CH_bol_270 2 2 0.0000980584
Brassica rapa A06 1 CH_bra_310 2 2 0.000429314
Cardamine hirsuta Chr5 1 CH_chi_281 2 3 0.000207354
Capsella rubella scaffold_5 1 CH_cru_307 2 3 0.000219338
Eutrema salsugineum scaffold_6 1 CH_esa_167 2 2 0.0000761499
Quercus lobata CM012294 1 CH_qlo_654 2 2 0.0000516289
Solanum lycopersicum SL4.0ch02 1 CH_sly_322 2 2 0.0000586941
Solanum pennellii Spenn-ch02 1 CH_spe_276 2 2 0.000044479
Solanum tuberosum ST4.03ch02 1 CH_stu_375 2 2 0.0000512453
Arabidopsis lyrata scaffold_5 2 CH_aly_127 3 7 0.000000228698
Arabidopsis thaliana Chr3 2 CH_ath_136 3 10 0.000000147727
Brassica carinata ChrC06 2 CH_bca_207 3 3 0.0000000383844
Brassica carinata ChrC06 2 CH_bca_985 2 2 0.00059854
Brassica oleracea C7 2 CH_bol_270 2 2 0.0000980584
Brassica rapa A06 2 CH_bra_310 2 2 0.000429314
Cardamine hirsuta Chr5 2 CH_chi_281 2 3 0.000207354
Capsella rubella scaffold_5 2 CH_cru_307 2 3 0.000219338
Eutrema salsugineum scaffold_6 2 CH_esa_167 2 2 0.0000761499
Quercus lobata CM012294 2 CH_qlo_654 2 2 0.0000516289
Solanum lycopersicum SL4.0ch02 2 CH_sly_322 2 2 0.0000586941
Solanum pennellii Spenn-ch02 2 CH_spe_276 2 2 0.000044479
Solanum tuberosum ST4.03ch02 2 CH_stu_375 2 2 0.0000512453

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001