Functional clusters
Information
- Type MapMan
- Description Protein biosynthesis.organelle machinery.plastidial ribosome
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Arabidopsis lyrata | scaffold_2 | 1 | CH_aly_17 | 8 | 9 | 0.00000000000000109088 |
| Arabidopsis lyrata | scaffold_2 | 1 | CH_aly_9 | 13 | 43 | 4.99006e-19 |
| Amaranthus hybridus | AmaHy_arrow1_Scaffold_10 | 1 | CH_amhyb_175 | 4 | 8 | 0.000186283 |
| Amaranthus hybridus | AmaHy_arrow1_Scaffold_10 | 1 | CH_amhyb_3 | 20 | 60 | 1.78705e-31 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.13 | 1 | CH_arhy_472 | 4 | 7 | 0.0000986046 |
| Arabidopsis thaliana | ChrC | 1 | CH_ath_3 | 19 | 70 | 1.37604e-36 |
| Brassica napus | BNapus_Darmor_BZH_scaffold_253 | 1 | CH_bna_203 | 7 | 35 | 0.000000118859 |
| Brassica napus | C06 | 1 | CH_bna_221 | 6 | 19 | 0.000000239357 |
| Brassica napus | BNapus_Darmor_BZH_scaffold_287 | 1 | CH_bna_293 | 6 | 25 | 0.00000154582 |
| Brassica napus | C09 | 1 | CH_bna_300 | 4 | 11 | 0.00000210044 |
| Brassica oleracea | Boleracea_scaffold_29 | 1 | CH_bol_14 | 15 | 59 | 4.78707e-20 |
| Brassica oleracea | Boleracea_scaffold_49 | 1 | CH_bol_141 | 8 | 58 | 0.00000098071 |
| Brassica oleracea | Boleracea_scaffold_45 | 1 | CH_bol_180 | 7 | 43 | 0.00000555233 |
| Brassica oleracea | C6 | 1 | CH_bol_225 | 4 | 5 | 0.0000311561 |
| Brassica oleracea | C9 | 1 | CH_bol_250 | 6 | 32 | 0.0000517224 |
| Brassica oleracea | Boleracea_scaffold_29 | 1 | CH_bol_26 | 9 | 18 | 0.0000000000000855481 |
| Brassica oleracea | Boleracea_scaffold_35 | 1 | CH_bol_8 | 18 | 76 | 3.68652e-24 |
| Brassica rapa | Brapa_scaffold_103 | 1 | CH_bra_146 | 8 | 70 | 0.00000594815 |
| Brassica rapa | Brapa_scaffold_143 | 1 | CH_bra_164 | 7 | 46 | 0.0000109932 |
| Brassica rapa | Brapa_scaffold_138 | 1 | CH_bra_17 | 12 | 46 | 0.00000000000000289678 |
| Brassica rapa | Brapa_scaffold_58 | 1 | CH_bra_34 | 12 | 74 | 0.00000000000150028 |
| Brassica rapa | Brapa_scaffold_59 | 1 | CH_bra_40 | 11 | 60 | 0.00000000000765498 |
| Brassica rapa | A06 | 1 | CH_bra_46 | 6 | 6 | 0.0000000000695579 |
| Brassica rapa | Brapa_scaffold_25 | 1 | CH_bra_80 | 9 | 61 | 0.0000000366809 |
| Capsicum annuum | PGAv.1.6.scaffold438 | 1 | CH_can_420 | 3 | 3 | 0.000513046 |
| Capsicum annuum | PGAv.1.6.scaffold327 | 1 | CH_can_421 | 3 | 3 | 0.000513046 |
| Cardamine hirsuta | ChrC | 1 | CH_chi_5 | 18 | 73 | 1.06736e-27 |
| Cucumis melo | chr00 | 1 | CH_cme_261 | 3 | 3 | 0.000265102 |
| Carica papaya | supercontig_0 | 1 | CH_cpa_146 | 3 | 3 | 0.0000887304 |
| Daucus carota | DCARv2_PT | 1 | CH_dca_3 | 22 | 76 | 7.29466e-37 |
| Erythranthe guttata | scaffold_4 | 1 | CH_egut_181 | 6 | 25 | 0.000000319992 |
| Gossypium hirsutum | A12 | 1 | CH_ghi_244 | 5 | 6 | 0.000000122379 |
| Gossypium hirsutum | D01 | 1 | CH_ghi_77 | 9 | 19 | 0.00000000000015109 |
| Glycine max | Gm12 | 1 | CH_gma_477 | 3 | 3 | 0.000308763 |
| Helianthus annuus | HanXRQCP | 1 | CH_han_32 | 14 | 48 | 4.99084e-18 |
| Helianthus annuus | HanXRQChr11 | 1 | CH_han_72 | 11 | 41 | 0.00000000000058327 |
| Hydrangea macrophylla | Hma1.2p1_0298F.1 | 1 | CH_hma_66 | 4 | 4 | 0.000000416541 |
| Lupinus albus | Lalb_Chr25 | 1 | CH_lal_147 | 5 | 14 | 0.00000841669 |
| Lupinus albus | Lalb_Chr03 | 1 | CH_lal_161 | 4 | 6 | 0.0000254059 |
| Lupinus albus | Lalb_Chr07 | 1 | CH_lal_49 | 9 | 43 | 0.000000000081325 |
| Lupinus albus | Lalb_Chr23 | 1 | CH_lal_93 | 6 | 19 | 0.000000281867 |
| Lotus japonicus | Contig00489 | 1 | CH_lja_152 | 6 | 19 | 0.000000557988 |
| Lotus japonicus | Contig00319 | 1 | CH_lja_27 | 10 | 25 | 0.00000000000000436706 |
| Lotus japonicus | Contig00318 | 1 | CH_lja_8 | 17 | 50 | 1.14632e-26 |
| Lonicera japonica | GWHAAZE00000002 | 1 | CH_lonja_109 | 9 | 71 | 0.000000000102715 |
| Lactuca sativa | Lsat_1_v8_lg_6 | 1 | CH_lsa_470 | 3 | 3 | 0.000364138 |
| Medicago truncatula | scaffold0002 | 1 | CH_mtr_106 | 9 | 35 | 0.000000000000182152 |
| Medicago truncatula | chr4 | 1 | CH_mtr_75 | 8 | 13 | 0.00000000000000230816 |
| Nelumbo nucifera | scaffold021 | 1 | CH_nnu_34 | 8 | 19 | 0.000000000000543404 |
| Olea europaea | chr1 | 1 | CH_oeu_279 | 4 | 14 | 0.00023542 |
| Petunia axillaris | Peaxi162Scf00299 | 1 | CH_pax_102 | 4 | 4 | 0.000000330442 |
| Punica granatum | NC_035240.1 | 1 | CH_pgr_6 | 19 | 66 | 4.93784e-30 |
| Papaver somniferum | NC_029434.1 | 1 | CH_pso_6 | 18 | 68 | 5.38466e-32 |
| Rosa chinensis | RcHm_v2.0_CP | 1 | CH_rch_99 | 10 | 76 | 0.000000000000621873 |
| Salvia bowleyana | GWHASIU00000001 | 1 | CH_sbo_27 | 11 | 49 | 1.7351e-17 |
| Simmondsia chinensis | GWHAASQ00000025 | 1 | CH_sci_91 | 5 | 13 | 0.00000209261 |
| Sechium edule | LG13 | 1 | CH_sed_14 | 14 | 61 | 3.12659e-17 |
| Sechium edule | Contig00297 | 1 | CH_sed_8 | 17 | 73 | 8.47623e-22 |
| Solanum lycopersicum | SL4.0ch00 | 1 | CH_sly_368 | 5 | 23 | 0.0000892701 |
| Selaginella moellendorffii | scaffold_175 | 1 | CH_smo_7 | 13 | 65 | 1.88093e-17 |
| Selenicereus undatus | Scaffold_33676 | 1 | CH_sun_163 | 4 | 8 | 0.000139643 |
| Selenicereus undatus | Scaffold_19921 | 1 | CH_sun_50 | 5 | 8 | 0.000000317291 |
| Selenicereus undatus | Scaffold_13745 | 1 | CH_sun_52 | 6 | 20 | 0.00000059835 |
| Utricularia gibba | unitig_91 | 1 | CH_ugi_66 | 7 | 41 | 0.00000010132 |
| Arabidopsis lyrata | scaffold_2 | 2 | CH_aly_17 | 8 | 9 | 0.00000000000000109088 |
| Arabidopsis lyrata | scaffold_2 | 2 | CH_aly_9 | 13 | 43 | 4.99006e-19 |
| Amaranthus hybridus | AmaHy_arrow1_Scaffold_10 | 2 | CH_amhyb_175 | 4 | 8 | 0.000186283 |
| Amaranthus hybridus | AmaHy_arrow1_Scaffold_10 | 2 | CH_amhyb_3 | 20 | 60 | 1.78705e-31 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.13 | 2 | CH_arhy_472 | 4 | 7 | 0.0000986046 |
| Arabidopsis thaliana | ChrC | 2 | CH_ath_3 | 19 | 70 | 1.37604e-36 |
| Brassica oleracea | Boleracea_scaffold_29 | 2 | CH_bol_14 | 15 | 59 | 4.78707e-20 |
| Brassica oleracea | Boleracea_scaffold_49 | 2 | CH_bol_141 | 8 | 58 | 0.00000098071 |
| Brassica oleracea | Boleracea_scaffold_45 | 2 | CH_bol_180 | 7 | 43 | 0.00000555233 |
| Brassica oleracea | C6 | 2 | CH_bol_225 | 4 | 5 | 0.0000311561 |
| Brassica oleracea | C9 | 2 | CH_bol_250 | 6 | 32 | 0.0000517224 |
| Brassica oleracea | Boleracea_scaffold_29 | 2 | CH_bol_26 | 9 | 18 | 0.0000000000000855481 |
| Brassica oleracea | Boleracea_scaffold_35 | 2 | CH_bol_8 | 18 | 76 | 3.68652e-24 |
| Brassica rapa | Brapa_scaffold_103 | 2 | CH_bra_146 | 8 | 70 | 0.00000594815 |
| Brassica rapa | Brapa_scaffold_143 | 2 | CH_bra_164 | 7 | 46 | 0.0000109932 |
| Brassica rapa | Brapa_scaffold_138 | 2 | CH_bra_17 | 12 | 46 | 0.00000000000000289678 |
| Brassica rapa | Brapa_scaffold_58 | 2 | CH_bra_34 | 12 | 74 | 0.00000000000150028 |
| Brassica rapa | Brapa_scaffold_59 | 2 | CH_bra_40 | 11 | 60 | 0.00000000000765498 |
| Brassica rapa | A06 | 2 | CH_bra_46 | 6 | 6 | 0.0000000000695579 |
| Brassica rapa | Brapa_scaffold_25 | 2 | CH_bra_80 | 9 | 61 | 0.0000000366809 |
| Capsicum annuum | PGAv.1.6.scaffold438 | 2 | CH_can_420 | 3 | 3 | 0.000513046 |
| Capsicum annuum | PGAv.1.6.scaffold327 | 2 | CH_can_421 | 3 | 3 | 0.000513046 |
| Cardamine hirsuta | ChrC | 2 | CH_chi_5 | 18 | 73 | 1.06736e-27 |
| Cucumis melo | chr00 | 2 | CH_cme_261 | 3 | 3 | 0.000265102 |
| Carica papaya | supercontig_0 | 2 | CH_cpa_146 | 3 | 3 | 0.0000887304 |
| Daucus carota | DCARv2_PT | 2 | CH_dca_3 | 22 | 76 | 7.29466e-37 |
| Erythranthe guttata | scaffold_4 | 2 | CH_egut_181 | 6 | 25 | 0.000000319992 |
| Gossypium hirsutum | A12 | 2 | CH_ghi_244 | 5 | 6 | 0.000000122379 |
| Gossypium hirsutum | D01 | 2 | CH_ghi_77 | 9 | 19 | 0.00000000000015109 |
| Glycine max | Gm12 | 2 | CH_gma_477 | 3 | 3 | 0.000308763 |
| Helianthus annuus | HanXRQCP | 2 | CH_han_32 | 14 | 48 | 4.99084e-18 |
| Helianthus annuus | HanXRQChr11 | 2 | CH_han_72 | 11 | 41 | 0.00000000000058327 |
| Hydrangea macrophylla | Hma1.2p1_0298F.1 | 2 | CH_hma_66 | 4 | 4 | 0.000000416541 |
| Lupinus albus | Lalb_Chr25 | 2 | CH_lal_147 | 5 | 14 | 0.00000841669 |
| Lupinus albus | Lalb_Chr03 | 2 | CH_lal_161 | 4 | 6 | 0.0000254059 |
| Lupinus albus | Lalb_Chr07 | 2 | CH_lal_49 | 9 | 43 | 0.000000000081325 |
| Lupinus albus | Lalb_Chr23 | 2 | CH_lal_93 | 6 | 19 | 0.000000281867 |
| Lotus japonicus | Contig00489 | 2 | CH_lja_152 | 6 | 19 | 0.000000557988 |
| Lotus japonicus | Contig00319 | 2 | CH_lja_27 | 10 | 25 | 0.00000000000000436706 |
| Lotus japonicus | Contig00318 | 2 | CH_lja_8 | 17 | 50 | 1.14632e-26 |
| Lonicera japonica | GWHAAZE00000002 | 2 | CH_lonja_109 | 9 | 71 | 0.000000000102715 |
| Lactuca sativa | Lsat_1_v8_lg_6 | 2 | CH_lsa_470 | 3 | 3 | 0.000364138 |
| Nelumbo nucifera | scaffold021 | 2 | CH_nnu_34 | 8 | 19 | 0.000000000000543404 |
| Olea europaea | chr1 | 2 | CH_oeu_279 | 4 | 14 | 0.00023542 |
| Petunia axillaris | Peaxi162Scf00299 | 2 | CH_pax_102 | 4 | 4 | 0.000000330442 |
| Punica granatum | NC_035240.1 | 2 | CH_pgr_6 | 19 | 66 | 4.93784e-30 |
| Papaver somniferum | NC_029434.1 | 2 | CH_pso_6 | 18 | 68 | 5.38466e-32 |
| Rosa chinensis | RcHm_v2.0_CP | 2 | CH_rch_99 | 10 | 76 | 0.000000000000621873 |
| Salvia bowleyana | GWHASIU00000001 | 2 | CH_sbo_27 | 11 | 49 | 1.7351e-17 |
| Simmondsia chinensis | GWHAASQ00000025 | 2 | CH_sci_91 | 5 | 13 | 0.00000209261 |
| Sechium edule | LG13 | 2 | CH_sed_14 | 14 | 61 | 3.12659e-17 |
| Sechium edule | Contig00297 | 2 | CH_sed_8 | 17 | 73 | 8.47623e-22 |
| Solanum lycopersicum | SL4.0ch00 | 2 | CH_sly_368 | 5 | 23 | 0.0000892701 |
| Selaginella moellendorffii | scaffold_175 | 2 | CH_smo_7 | 13 | 65 | 1.88093e-17 |
| Selenicereus undatus | Scaffold_33676 | 2 | CH_sun_163 | 4 | 8 | 0.000139643 |
| Selenicereus undatus | Scaffold_19921 | 2 | CH_sun_50 | 5 | 8 | 0.000000317291 |
| Selenicereus undatus | Scaffold_13745 | 2 | CH_sun_52 | 6 | 20 | 0.00000059835 |
| Utricularia gibba | unitig_91 | 2 | CH_ugi_66 | 7 | 41 | 0.00000010132 |
Available child term results
| Ontology identifier | Description | Number of clusters |
|---|---|---|
| 17.7.2.1.1 | Protein biosynthesis.organelle machinery.plastidial ribosome.large ribosomal subunit proteome.component psRPL1 | 8 |
| 17.7.2.1.10 | Protein biosynthesis.organelle machinery.plastidial ribosome.large ribosomal subunit proteome.component psRPL12 | 26 |
| 17.7.2.1.11 | Protein biosynthesis.organelle machinery.plastidial ribosome.large ribosomal subunit proteome.component psRPL13 | 8 |
| 17.7.2.1.15 | Protein biosynthesis.organelle machinery.plastidial ribosome.large ribosomal subunit proteome.component psRPL17 | 10 |
| 17.7.2.1.16 | Protein biosynthesis.organelle machinery.plastidial ribosome.large ribosomal subunit proteome.component psRPL18 | 2 |
| 17.7.2.1.17 | Protein biosynthesis.organelle machinery.plastidial ribosome.large ribosomal subunit proteome.component psRPL19 | 2 |
| 17.7.2.1.18 | Protein biosynthesis.organelle machinery.plastidial ribosome.large ribosomal subunit proteome.component psRPL20 | 2 |
| 17.7.2.1.19 | Protein biosynthesis.organelle machinery.plastidial ribosome.large ribosomal subunit proteome.component psRPL21 | 2 |
| 17.7.2.1.21 | Protein biosynthesis.organelle machinery.plastidial ribosome.large ribosomal subunit proteome.component psRPL23 | 2 |
| 17.7.2.1.24 | Protein biosynthesis.organelle machinery.plastidial ribosome.large ribosomal subunit proteome.component psRPL28 | 2 |
| 17.7.2.1.25 | Protein biosynthesis.organelle machinery.plastidial ribosome.large ribosomal subunit proteome.component psRPL29 | 2 |
| 17.7.2.1.26 | Protein biosynthesis.organelle machinery.plastidial ribosome.large ribosomal subunit proteome.component psRPL31 | 4 |
| 17.7.2.1.29 | Protein biosynthesis.organelle machinery.plastidial ribosome.large ribosomal subunit proteome.component psRPL34 | 10 |
| 17.7.2.1.30 | Protein biosynthesis.organelle machinery.plastidial ribosome.large ribosomal subunit proteome.component psRPL35 | 4 |
| 17.7.2.1.32 | Protein biosynthesis.organelle machinery.plastidial ribosome.large ribosomal subunit proteome.component psPSRP5 | 14 |
| 17.7.2.1.33 | Protein biosynthesis.organelle machinery.plastidial ribosome.large ribosomal subunit proteome.component psPSRP6 | 8 |
| 17.7.2.1.4 | Protein biosynthesis.organelle machinery.plastidial ribosome.large ribosomal subunit proteome.component psRPL4 | 4 |
| 17.7.2.1.6 | Protein biosynthesis.organelle machinery.plastidial ribosome.large ribosomal subunit proteome.component psRPL6 | 6 |
| 17.7.2.1.7 | Protein biosynthesis.organelle machinery.plastidial ribosome.large ribosomal subunit proteome.component psRPL9 | 4 |
| 17.7.2.1.9 | Protein biosynthesis.organelle machinery.plastidial ribosome.large ribosomal subunit proteome.component psRPL11 | 2 |
| 17.7.2.2 | Protein biosynthesis.organelle machinery.plastidial ribosome.small ribosomal subunit proteome | 14 |
| 17.7.2.2.17 | Protein biosynthesis.organelle machinery.plastidial ribosome.small ribosomal subunit proteome.component psRPS17 | 8 |
| 17.7.2.2.18 | Protein biosynthesis.organelle machinery.plastidial ribosome.small ribosomal subunit proteome.component psRPS18 | 2 |
| 17.7.2.2.2 | Protein biosynthesis.organelle machinery.plastidial ribosome.small ribosomal subunit proteome.component psRPS2 | 2 |
| 17.7.2.2.20 | Protein biosynthesis.organelle machinery.plastidial ribosome.small ribosomal subunit proteome.component psRPS20 | 3 |
| 17.7.2.2.22 | Protein biosynthesis.organelle machinery.plastidial ribosome.small ribosomal subunit proteome.component psPSRP2 | 3 |
| 17.7.2.2.23 | Protein biosynthesis.organelle machinery.plastidial ribosome.small ribosomal subunit proteome.component psPSRP3 | 4 |
| 17.7.2.2.24 | Protein biosynthesis.organelle machinery.plastidial ribosome.small ribosomal subunit proteome.component psPSRP4 | 2 |
| 17.7.2.2.5 | Protein biosynthesis.organelle machinery.plastidial ribosome.small ribosomal subunit proteome.component psRPS5 | 4 |
| 17.7.2.2.6 | Protein biosynthesis.organelle machinery.plastidial ribosome.small ribosomal subunit proteome.component psRPS6 | 6 |
| 17.7.2.2.7 | Protein biosynthesis.organelle machinery.plastidial ribosome.small ribosomal subunit proteome.component psRPS7 | 2 |
| 17.7.2.3.1 | Protein biosynthesis.organelle machinery.plastidial ribosome.plastidial ribosome-associated proteins.hibernation-promoting factor (PSRP1) | 7 |
| 17.7.2.3.2 | Protein biosynthesis.organelle machinery.plastidial ribosome.plastidial ribosome-associated proteins.ribosome biogenesis factor (PAC) | 7 |
| 17.7.2.3.3 | Protein biosynthesis.organelle machinery.plastidial ribosome.plastidial ribosome-associated proteins.ribosome biogenesis factor (CRASS) | 8 |
| 17.7.2.3.4 | Protein biosynthesis.organelle machinery.plastidial ribosome.plastidial ribosome-associated proteins.ribosome biogenesis factor (RsgA) | 16 |
| 17.7.2.3.5 | Protein biosynthesis.organelle machinery.plastidial ribosome.plastidial ribosome-associated proteins.ribosome biogenesis factor (CGL20) | 6 |
| 17.7.2.3.6 | Protein biosynthesis.organelle machinery.plastidial ribosome.plastidial ribosome-associated proteins.ribosome biogenesis factor (RBF1) | 2 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |