Functional clusters

Information

  • Type MapMan
  • Description Protein biosynthesis.organelle machinery.mitochondrial ribosome.small ribosomal subunit proteome.component mtRPS13 or psRPS13

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Acer truncatum chr13 1 CH_acertr_34 6 40 0.00000000000419434
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.10 1 CH_arhy_98 6 14 0.00000000000028725
Corylus avellana 1 1 CH_cav_349 2 2 0.000230008
Carpinus fangiana Cfa06 1 CH_cfa_222 2 2 0.0000757346
Carya illinoinensis Chr05 1 CH_cil_349 2 2 0.0000619828
Carica papaya supercontig_36 1 CH_cpa_300 2 2 0.000285198
Fragaria vesca Fvb2 1 CH_fve_261 2 2 0.0000589102
Malus domestica Chr10 1 CH_mdo_459 2 2 0.000113763
Marchantia polymorpha scaffold_55 1 CH_mpo_99 2 2 0.000331327
Nelumbo nucifera chr1 1 CH_nnu_362 2 2 0.000261609
Physcomitrium patens Chr15 1 CH_ppa_265 2 3 0.000551426
Prunus persica Pp01 1 CH_ppe_327 2 2 0.0000745962
Populus trichocarpa Chr02 1 CH_ptr_366 2 2 0.0001734
Quercus lobata 9 1 CH_qlo_795 2 2 0.000154887
Rosa chinensis RcHm_v2.0_Chr6 1 CH_rch_580 2 2 0.000119596
Rhododendron simsii chr04 1 CH_rsi_108 4 8 0.000000000282117
Sechium edule LG03 1 CH_sed_198 2 2 0.0000713419
Theobroma cacao Chromosome_8 1 CH_tca_281 2 2 0.0000732386
Tarenaya hassleriana NW_010969032.1 1 CH_tha_139 2 2 0.000209541
Acer truncatum chr13 2 CH_acertr_34 6 40 0.00000000000419434
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.10 2 CH_arhy_98 6 14 0.00000000000028725
Corylus avellana 1 2 CH_cav_349 2 2 0.000230008
Carpinus fangiana Cfa06 2 CH_cfa_222 2 2 0.0000757346
Carya illinoinensis Chr05 2 CH_cil_349 2 2 0.0000619828
Carica papaya supercontig_36 2 CH_cpa_300 2 2 0.000285198
Fragaria vesca Fvb2 2 CH_fve_261 2 2 0.0000589102
Malus domestica Chr10 2 CH_mdo_459 2 2 0.000113763
Marchantia polymorpha scaffold_55 2 CH_mpo_99 2 2 0.000331327
Nelumbo nucifera chr1 2 CH_nnu_362 2 2 0.000261609
Physcomitrium patens Chr15 2 CH_ppa_265 2 3 0.000551426
Prunus persica Pp01 2 CH_ppe_327 2 2 0.0000745962
Populus trichocarpa Chr02 2 CH_ptr_366 2 2 0.0001734
Quercus lobata 9 2 CH_qlo_795 2 2 0.000154887
Rosa chinensis RcHm_v2.0_Chr6 2 CH_rch_580 2 2 0.000119596
Rhododendron simsii chr04 2 CH_rsi_108 4 8 0.000000000282117
Sechium edule LG03 2 CH_sed_198 2 2 0.0000713419
Theobroma cacao Chromosome_8 2 CH_tca_281 2 2 0.0000732386
Tarenaya hassleriana NW_010969032.1 2 CH_tha_139 2 2 0.000209541

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001