Functional clusters

Information

  • Type MapMan
  • Description Protein biosynthesis.organelle machinery.translation initiation.initiation factor (IF-3)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Actinidia chinensis Lachesis_group23 1 CH_ach_290 2 3 0.000977721
Brassica carinata ChrC01 1 CH_bca_1004 2 2 0.00059854
Brassica carinata ChrB06 1 CH_bca_1005 2 2 0.00059854
Brassica oleracea C3 1 CH_bol_386 2 2 0.000490292
Capsicum annuum PGAv.1.6.scaffold588 1 CH_can_348 2 2 0.000247831
Hydrangea macrophylla Hma1.2p1_0028F.1 1 CH_hma_411 2 3 0.000999685
Lonicera japonica GWHAAZE00000005 1 CH_lonja_481 2 2 0.000179662
Nelumbo nucifera chr8 1 CH_nnu_371 2 2 0.000261609
Sequoiadendron giganteum chr9 1 CH_sgi_1319 2 2 0.000487151
Sequoiadendron giganteum chr2 1 CH_sgi_1320 2 2 0.000487151
Actinidia chinensis Lachesis_group23 2 CH_ach_290 2 3 0.000977721
Brassica carinata ChrC01 2 CH_bca_1004 2 2 0.00059854
Brassica carinata ChrB06 2 CH_bca_1005 2 2 0.00059854
Brassica oleracea C3 2 CH_bol_386 2 2 0.000490292
Capsicum annuum PGAv.1.6.scaffold588 2 CH_can_348 2 2 0.000247831
Hydrangea macrophylla Hma1.2p1_0028F.1 2 CH_hma_411 2 3 0.000999685
Lonicera japonica GWHAAZE00000005 2 CH_lonja_481 2 2 0.000179662
Nelumbo nucifera chr8 2 CH_nnu_371 2 2 0.000261609
Sequoiadendron giganteum chr9 2 CH_sgi_1319 2 2 0.000487151
Sequoiadendron giganteum chr2 2 CH_sgi_1320 2 2 0.000487151

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001