Functional clusters

Information

  • Type MapMan
  • Description RNA processing.RNA surveillance

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Corylus avellana 5 1 CH_cav_296 4 11 0.000110361
Corylus avellana 5 2 CH_cav_296 4 11 0.000110361

Available child term results

Ontology identifier Description Number of clusters
16.4.1.1.1 RNA processing.RNA surveillance.exosome complex.EXO9 core complex.component RRP40 12
16.4.1.1.3 RNA processing.RNA surveillance.exosome complex.EXO9 core complex.component RRP42 2
16.4.1.1.4 RNA processing.RNA surveillance.exosome complex.EXO9 core complex.component RRP43 3
16.4.1.1.5 RNA processing.RNA surveillance.exosome complex.EXO9 core complex.component RRP45 4
16.4.1.1.6 RNA processing.RNA surveillance.exosome complex.EXO9 core complex.component RRP46 2
16.4.1.1.7 RNA processing.RNA surveillance.exosome complex.EXO9 core complex.component RRP4 8
16.4.1.1.8 RNA processing.RNA surveillance.exosome complex.EXO9 core complex.component CSL4 4
16.4.1.1.9 RNA processing.RNA surveillance.exosome complex.EXO9 core complex.component MTR3/RRP41L 2
16.4.1.2.1 RNA processing.RNA surveillance.exosome complex.associated co-factor activities.exoribonuclease (RRP6L) 2
16.4.1.2.2 RNA processing.RNA surveillance.exosome complex.associated co-factor activities.exoribonuclease (Dis3/RRP44) 2
16.4.1.2.3.1 RNA processing.RNA surveillance.exosome complex.associated co-factor activities.Nuclear Exosome Targeting (NEXT) activation complex.RNA helicase component MTR4/HEN2 2
16.4.1.2.3.2 RNA processing.RNA surveillance.exosome complex.associated co-factor activities.Nuclear Exosome Targeting (NEXT) activation complex.component RBM7 4
16.4.1.2.3.3 RNA processing.RNA surveillance.exosome complex.associated co-factor activities.Nuclear Exosome Targeting (NEXT) activation complex.component ZCCHC8 2
16.4.1.2.5 RNA processing.RNA surveillance.exosome complex.associated co-factor activities.poly(A) RNA polymerase (TRF4) 4
16.4.1.2.6.1 RNA processing.RNA surveillance.exosome complex.associated co-factor activities.SUPERKILLER (SKI) regulation complex.RNA helicase component SKI2 2
16.4.1.2.6.2 RNA processing.RNA surveillance.exosome complex.associated co-factor activities.SUPERKILLER (SKI) regulation complex.component SKI3 5
16.4.1.2.6.3 RNA processing.RNA surveillance.exosome complex.associated co-factor activities.SUPERKILLER (SKI) regulation complex.component SKI8/VIP3 4
16.4.1.2.6.4 RNA processing.RNA surveillance.exosome complex.associated co-factor activities.SUPERKILLER (SKI) regulation complex.associated EXO9 interaction GTPase (SKI7) 2
16.4.1.2.7 RNA processing.RNA surveillance.exosome complex.associated co-factor activities.regulatory cofactor (RST1) 6
16.4.1.2.8 RNA processing.RNA surveillance.exosome complex.associated co-factor activities.regulatory cofactor (RIPR) 8
16.4.2.1.1 RNA processing.RNA surveillance.mRNA deadenylation-dependent decay.mRNA deadenylation.poly(A)-specific ribonuclease (PARN) 2
16.4.2.1.2.1 RNA processing.RNA surveillance.mRNA deadenylation-dependent decay.mRNA deadenylation.CCR4-NOT complex.deadenylase component CCR4 31
16.4.2.1.2.2 RNA processing.RNA surveillance.mRNA deadenylation-dependent decay.mRNA deadenylation.CCR4-NOT complex.deadenylase component CAF1 12
16.4.2.1.2.3 RNA processing.RNA surveillance.mRNA deadenylation-dependent decay.mRNA deadenylation.CCR4-NOT complex.scaffold component NOT1 18
16.4.2.1.2.4 RNA processing.RNA surveillance.mRNA deadenylation-dependent decay.mRNA deadenylation.CCR4-NOT complex.component NOT2 8
16.4.2.1.2.5 RNA processing.RNA surveillance.mRNA deadenylation-dependent decay.mRNA deadenylation.CCR4-NOT complex.component NOT3/5 16
16.4.2.1.2.6 RNA processing.RNA surveillance.mRNA deadenylation-dependent decay.mRNA deadenylation.CCR4-NOT complex.component NOT4 20
16.4.2.2.1 RNA processing.RNA surveillance.mRNA deadenylation-dependent decay.mRNA decapping complex.regulatory component DCP1 20
16.4.2.2.2 RNA processing.RNA surveillance.mRNA deadenylation-dependent decay.mRNA decapping complex.hydrolase component DCP2 12
16.4.2.2.3 RNA processing.RNA surveillance.mRNA deadenylation-dependent decay.mRNA decapping complex.regulatory component DCP5 8
16.4.2.2.4 RNA processing.RNA surveillance.mRNA deadenylation-dependent decay.mRNA decapping complex.scaffold component VCS 29
16.4.2.5 RNA processing.RNA surveillance.mRNA deadenylation-dependent decay.mRNA decay factor (PAT1) 23
16.4.2.6 RNA processing.RNA surveillance.mRNA deadenylation-dependent decay.mRNA helicase (DHH1/DDX6) 1
16.4.2.7 RNA processing.RNA surveillance.mRNA deadenylation-dependent decay.exoribonuclease (SOV) 2
16.4.3.1 RNA processing.RNA surveillance.non-canonical RNA decapping and decay.decapping nuclease (DXO1) 6

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001