Functional clusters

Information

  • Type MapMan
  • Description RNA processing.RNA surveillance.mRNA deadenylation-dependent decay.mRNA decay factor (PAT1)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Carya illinoinensis Chr03 1 CH_cil_431 2 2 0.000185948
Glycine max Gm15 1 CH_gma_519 2 2 0.000379557
Glycine max Gm08 1 CH_gma_520 2 2 0.000379557
Medicago truncatula chr2 1 CH_mtr_534 2 2 0.0000410863
Oryza sativa ssp. japonica chr02 1 CH_osa_321 2 2 0.000316874
Pisum sativum chr1LG6 1 CH_psa_337 2 2 0.000312981
Phaseolus vulgaris Chr05 1 CH_pvu_442 2 3 0.000661214
Theobroma cacao Chromosome_7 1 CH_tca_418 2 3 0.000659107
Trifolium pratense Tp57577_TGAC_v2_LG7 1 CH_tpr_247 2 2 0.0000756974
Tripterygium wilfordii NC_052235.1 1 CH_twi_252 2 2 0.000334504
Tripterygium wilfordii NC_052246.1 1 CH_twi_253 2 2 0.000334504
Vigna mungo CM024079.1 1 CH_vmu_300 2 2 0.000193842
Carya illinoinensis Chr03 2 CH_cil_431 2 2 0.000185948
Glycine max Gm15 2 CH_gma_519 2 2 0.000379557
Glycine max Gm08 2 CH_gma_520 2 2 0.000379557
Oryza sativa ssp. japonica chr02 2 CH_osa_321 2 2 0.000316874
Pisum sativum chr1LG6 2 CH_psa_337 2 2 0.000312981
Phaseolus vulgaris Chr05 2 CH_pvu_442 2 3 0.000661214
Theobroma cacao Chromosome_7 2 CH_tca_418 2 3 0.000659107
Trifolium pratense Tp57577_TGAC_v2_LG7 2 CH_tpr_247 2 2 0.0000756974
Tripterygium wilfordii NC_052235.1 2 CH_twi_252 2 2 0.000334504
Tripterygium wilfordii NC_052246.1 2 CH_twi_253 2 2 0.000334504
Vigna mungo CM024079.1 2 CH_vmu_300 2 2 0.000193842

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001