Functional clusters
Information
- Type MapMan
- Description RNA processing.RNA surveillance.mRNA deadenylation-dependent decay.mRNA deadenylation.CCR4-NOT complex.deadenylase component CCR4
Cluster overview
Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
---|---|---|---|---|---|---|
Arabidopsis lyrata | scaffold_5 | 1 | CH_aly_283 | 2 | 3 | 0.000198007 |
Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.16 | 1 | CH_arhy_196 | 3 | 3 | 0.0000000268895 |
Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.06 | 1 | CH_arhy_621 | 2 | 2 | 0.000449075 |
Arabidopsis thaliana | Chr3 | 1 | CH_ath_335 | 2 | 5 | 0.00028648 |
Brassica oleracea | C6 | 1 | CH_bol_397 | 2 | 3 | 0.000588328 |
Brassica rapa | A07 | 1 | CH_bra_369 | 2 | 3 | 0.000772726 |
Ceratophyllum demersum | 8 | 1 | CH_cde_49 | 3 | 6 | 0.00000187085 |
Cardamine hirsuta | Chr4 | 1 | CH_chi_348 | 2 | 2 | 0.000414723 |
Chenopodium quinoa | C_Quinoa_Scaffold_2230 | 1 | CH_cqu_524 | 2 | 2 | 0.000710732 |
Chenopodium quinoa | C_Quinoa_Scaffold_3784 | 1 | CH_cqu_525 | 2 | 2 | 0.000710732 |
Capsella rubella | scaffold_5 | 1 | CH_cru_304 | 2 | 3 | 0.000219338 |
Eutrema salsugineum | scaffold_19 | 1 | CH_esa_299 | 2 | 3 | 0.000685305 |
Medicago truncatula | chr1 | 1 | CH_mtr_390 | 3 | 13 | 0.00000289577 |
Quercus lobata | 12 | 1 | CH_qlo_782 | 2 | 2 | 0.000154887 |
Schrenkiella parvula | ch5-1 | 1 | CH_spa_203 | 2 | 3 | 0.000236193 |
Tarenaya hassleriana | NW_010960187.1 | 1 | CH_tha_169 | 2 | 2 | 0.000419082 |
Arabidopsis lyrata | scaffold_5 | 2 | CH_aly_283 | 2 | 3 | 0.000198007 |
Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.16 | 2 | CH_arhy_196 | 3 | 3 | 0.0000000268895 |
Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.06 | 2 | CH_arhy_621 | 2 | 2 | 0.000449075 |
Arabidopsis thaliana | Chr3 | 2 | CH_ath_335 | 2 | 5 | 0.00028648 |
Brassica oleracea | C6 | 2 | CH_bol_397 | 2 | 3 | 0.000588328 |
Brassica rapa | A07 | 2 | CH_bra_369 | 2 | 3 | 0.000772726 |
Ceratophyllum demersum | 8 | 2 | CH_cde_49 | 3 | 6 | 0.00000187085 |
Cardamine hirsuta | Chr4 | 2 | CH_chi_348 | 2 | 2 | 0.000414723 |
Chenopodium quinoa | C_Quinoa_Scaffold_2230 | 2 | CH_cqu_524 | 2 | 2 | 0.000710732 |
Chenopodium quinoa | C_Quinoa_Scaffold_3784 | 2 | CH_cqu_525 | 2 | 2 | 0.000710732 |
Capsella rubella | scaffold_5 | 2 | CH_cru_304 | 2 | 3 | 0.000219338 |
Eutrema salsugineum | scaffold_19 | 2 | CH_esa_299 | 2 | 3 | 0.000685305 |
Quercus lobata | 12 | 2 | CH_qlo_782 | 2 | 2 | 0.000154887 |
Schrenkiella parvula | ch5-1 | 2 | CH_spa_203 | 2 | 3 | 0.000236193 |
Tarenaya hassleriana | NW_010960187.1 | 2 | CH_tha_169 | 2 | 2 | 0.000419082 |
Functional Clusters Experiments
Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
---|---|---|---|---|---|---|---|
1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |