Functional clusters

Information

  • Type MapMan
  • Description RNA processing.RNA surveillance.mRNA deadenylation-dependent decay.mRNA deadenylation.CCR4-NOT complex.deadenylase component CCR4

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Arabidopsis lyrata scaffold_5 1 CH_aly_283 2 3 0.000198007
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.16 1 CH_arhy_196 3 3 0.0000000268895
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.06 1 CH_arhy_621 2 2 0.000449075
Arabidopsis thaliana Chr3 1 CH_ath_335 2 5 0.00028648
Brassica oleracea C6 1 CH_bol_397 2 3 0.000588328
Brassica rapa A07 1 CH_bra_369 2 3 0.000772726
Ceratophyllum demersum 8 1 CH_cde_49 3 6 0.00000187085
Cardamine hirsuta Chr4 1 CH_chi_348 2 2 0.000414723
Chenopodium quinoa C_Quinoa_Scaffold_2230 1 CH_cqu_524 2 2 0.000710732
Chenopodium quinoa C_Quinoa_Scaffold_3784 1 CH_cqu_525 2 2 0.000710732
Capsella rubella scaffold_5 1 CH_cru_304 2 3 0.000219338
Eutrema salsugineum scaffold_19 1 CH_esa_299 2 3 0.000685305
Medicago truncatula chr1 1 CH_mtr_390 3 13 0.00000289577
Quercus lobata 12 1 CH_qlo_782 2 2 0.000154887
Schrenkiella parvula ch5-1 1 CH_spa_203 2 3 0.000236193
Tarenaya hassleriana NW_010960187.1 1 CH_tha_169 2 2 0.000419082
Arabidopsis lyrata scaffold_5 2 CH_aly_283 2 3 0.000198007
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.16 2 CH_arhy_196 3 3 0.0000000268895
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.06 2 CH_arhy_621 2 2 0.000449075
Arabidopsis thaliana Chr3 2 CH_ath_335 2 5 0.00028648
Brassica oleracea C6 2 CH_bol_397 2 3 0.000588328
Brassica rapa A07 2 CH_bra_369 2 3 0.000772726
Ceratophyllum demersum 8 2 CH_cde_49 3 6 0.00000187085
Cardamine hirsuta Chr4 2 CH_chi_348 2 2 0.000414723
Chenopodium quinoa C_Quinoa_Scaffold_2230 2 CH_cqu_524 2 2 0.000710732
Chenopodium quinoa C_Quinoa_Scaffold_3784 2 CH_cqu_525 2 2 0.000710732
Capsella rubella scaffold_5 2 CH_cru_304 2 3 0.000219338
Eutrema salsugineum scaffold_19 2 CH_esa_299 2 3 0.000685305
Quercus lobata 12 2 CH_qlo_782 2 2 0.000154887
Schrenkiella parvula ch5-1 2 CH_spa_203 2 3 0.000236193
Tarenaya hassleriana NW_010960187.1 2 CH_tha_169 2 2 0.000419082

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001