Functional clusters

Information

  • Type MapMan
  • Description RNA processing.RNA surveillance.mRNA deadenylation-dependent decay.mRNA decapping complex.scaffold component VCS

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Arabidopsis lyrata scaffold_3 1 CH_aly_226 2 2 0.0000660044
Amaranthus hybridus AmaHy_arrow1_Scaffold_14 1 CH_amhyb_223 2 4 0.000505008
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.01 1 CH_arhy_632 2 2 0.000449075
Arabidopsis thaliana Chr3 1 CH_ath_215 2 2 0.0000286492
Brassica carinata ChrC05 1 CH_bca_790 2 2 0.000213764
Brassica napus A05 1 CH_bna_508 2 2 0.000111309
Brassica rapa A05 1 CH_bra_193 2 2 0.0000429314
Capsella rubella scaffold_3 1 CH_cru_256 2 2 0.0000731154
Erythranthe guttata scaffold_8 1 CH_egut_286 2 2 0.0000728147
Eutrema salsugineum scaffold_13 1 CH_esa_163 2 2 0.0000761499
Gossypium raimondii Chr06 1 CH_gra_390 2 3 0.000482475
Magnolia biondii Chr15 1 CH_mbi_178 3 6 0.000000283011
Physcomitrium patens Chr15 1 CH_ppa_145 2 2 0.000183818
Schrenkiella parvula ch3-1 1 CH_spa_163 2 2 0.000078734
Arabidopsis lyrata scaffold_3 2 CH_aly_226 2 2 0.0000660044
Amaranthus hybridus AmaHy_arrow1_Scaffold_14 2 CH_amhyb_223 2 4 0.000505008
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.01 2 CH_arhy_632 2 2 0.000449075
Arabidopsis thaliana Chr3 2 CH_ath_215 2 2 0.0000286492
Brassica carinata ChrC05 2 CH_bca_790 2 2 0.000213764
Brassica rapa A05 2 CH_bra_193 2 2 0.0000429314
Capsella rubella scaffold_3 2 CH_cru_256 2 2 0.0000731154
Erythranthe guttata scaffold_8 2 CH_egut_286 2 2 0.0000728147
Eutrema salsugineum scaffold_13 2 CH_esa_163 2 2 0.0000761499
Gossypium hirsutum A09 2 CH_ghi_679 2 2 0.000400523
Gossypium hirsutum D09 2 CH_ghi_680 2 2 0.000400523
Gossypium raimondii Chr06 2 CH_gra_390 2 3 0.000482475
Magnolia biondii Chr15 2 CH_mbi_178 3 6 0.000000283011
Physcomitrium patens Chr15 2 CH_ppa_145 2 2 0.000183818
Schrenkiella parvula ch3-1 2 CH_spa_163 2 2 0.000078734

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001