Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p42100 Brassica napus
A03p01140 Brassica napus
A03p35810 Brassica napus
A05p39210 Brassica napus
A07p21450 Brassica napus
A09p46200 Brassica napus
Aa31LG10G8420 Aethionema arabicum
Aa31LG3G2300 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_228.3033 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_228.3050 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_228.3060 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_368.1131 Anthoceros agrestis
Actinidia13073 Actinidia chinensis
Actinidia24129 Actinidia chinensis
Actinidia28900 Actinidia chinensis
Ah.08g211660 Amaranthus hybridus
Ah.14g085860 Amaranthus hybridus
AL3G21070 Arabidopsis lyrata
AL5G34110 Arabidopsis lyrata
AL6G12670 Arabidopsis lyrata
Aqoxy2G01785 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.0N72S3 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.6S6Q2U Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.87HTU1 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.8F2DT0 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.KSV57K Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.L7JGCR Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.PF2L6F Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.R086A8 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.UBK6DT Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.WAKG1R Arachis hypogaea
AT3G09840 Arabidopsis thaliana
AT3G53230 Arabidopsis thaliana
AT5G03340 Arabidopsis thaliana
ATR1132G014 Amborella trichopoda
ATR1152G092 Amborella trichopoda
Atru.chr3.3556 Acer truncatum
Atru.chr8.1826 Acer truncatum
Atru.chr9.2536 Acer truncatum
AUR62008175 Chenopodium quinoa
AUR62026909 Chenopodium quinoa
AUR62038585 Chenopodium quinoa
AUR62039867 Chenopodium quinoa
AUR62040576 Chenopodium quinoa
AUR62042049 Chenopodium quinoa
BcaB01g05824 Brassica carinata
BcaB01g05845 Brassica carinata
BcaB02g07800 Brassica carinata
BcaB03g11585 Brassica carinata
BcaB04g21241 Brassica carinata
BcaC01g04249 Brassica carinata
BcaC05g29495 Brassica carinata
BcaC05g29706 Brassica carinata
BcaC07g39682 Brassica carinata
BcaC09g48122 Brassica carinata
BcaNung06804 Brassica carinata
BolC1t05429H Brassica oleracea
BolC3t12701H Brassica oleracea
BolC3t16617H Brassica oleracea
BolC5t34480H Brassica oleracea
BolC6t37291H Brassica oleracea
BolC8t50453H Brassica oleracea
BraA01t04278Z Brassica rapa
BraA03t09495Z Brassica rapa
BraA03t12753Z Brassica rapa
BraA05t22710Z Brassica rapa
BraA07t29832Z Brassica rapa
BraA09t40084Z Brassica rapa
C03p01450 Brassica napus
C03p43460 Brassica napus
C05p58260 Brassica napus
C06p21060 Brassica napus
C08p28450 Brassica napus
CAN.G1166.32 Capsicum annuum
CAN.G1169.14 Capsicum annuum
CAN.G1755.4 Capsicum annuum
CAN.G309.14 Capsicum annuum
CAN.G900.46 Capsicum annuum
CANSAT54G1454 Cannabis sativa
CANSAT80G1774 Cannabis sativa
CARHR163070 Cardamine hirsuta
CARHR272090 Cardamine hirsuta
Carub.0003s0893 Capsella rubella
Carub.0005s1976 Capsella rubella
Carub.0006s0215 Capsella rubella
Ca_01389_v3 Cicer arietinum L.
Ca_08858_v3 Cicer arietinum L.
Ca_11493_v3 Cicer arietinum L.
CBR_g8453 Chara braunii
Cc01_g10600 Coffea canephora
Cc02_g15090 Coffea canephora
Cc04_g12540 Coffea canephora
Cc06_g04140 Coffea canephora
Cc06_g17260 Coffea canephora
CDE02G3027 Ceratophyllum demersum
CDE06G0560 Ceratophyllum demersum
CDE06G2269 Ceratophyllum demersum
CDE07G1125 Ceratophyllum demersum
CDE11G0622 Ceratophyllum demersum
Cfa010317 Carpinus fangiana
Cfa010348 Carpinus fangiana
Cfa017590 Carpinus fangiana
Ciclev10011046m.g Citrus clementina
Ciclev10013552m.g Citrus clementina
Ciclev10018887m.g Citrus clementina
Ciclev10024348m.g Citrus clementina
Ciclev10027840m.g Citrus clementina
CiPaw.09G173400 Carya illinoinensis
CiPaw.13G118100 Carya illinoinensis
CiPaw.13G118200 Carya illinoinensis
ClCG04G009260 Citrullus lanatus
ClCG06G017170 Citrullus lanatus
ClCG10G020200 Citrullus lanatus
COL.COLO4_03885 Corchorus olitorius
COL.COLO4_17360 Corchorus olitorius
COL.COLO4_25876 Corchorus olitorius
COL.COLO4_25881 Corchorus olitorius
COL.COLO4_25891 Corchorus olitorius
COL.COLO4_26975 Corchorus olitorius
COL.COLO4_34704 Corchorus olitorius
Cpa.g.sc153.17 Carica papaya
Cpa.g.sc56.23 Carica papaya
Cpa.g.sc56.24 Carica papaya
Cre06.g269950 Chlamydomonas reinhardtii
CsaV3_1G001310 Cucumis sativus L.
CsaV3_3G035900 Cucumis sativus L.
CsaV3_6G039850 Cucumis sativus L.
CSS0008341 Camellia sinensis var. sinensis
CSS0009178 Camellia sinensis var. sinensis
CSS0039212 Camellia sinensis var. sinensis
CSS0041444 Camellia sinensis var. sinensis
DCAR_014993 Daucus carota
DCAR_016471 Daucus carota
DCAR_017688 Daucus carota
DCAR_020824 Daucus carota
Dinv20622 Davidia involucrata
Dinv29354 Davidia involucrata
Dinv34699 Davidia involucrata
Dinv35778 Davidia involucrata
Dinv37306 Davidia involucrata
Duzib093G0198 Durio zibethinus
Duzib106G1759 Durio zibethinus
Duzib128G1076 Durio zibethinus
Duzib150G1429 Durio zibethinus
Duzib170G0362 Durio zibethinus
ECA238G0239 Erigeron canadensis
ECA248G0147 Erigeron canadensis
ECA248G2986 Erigeron canadensis
ECA248G3803 Erigeron canadensis
EL10Ac7g16618 Beta vulgaris
EL10Ac8g19480 Beta vulgaris
EL10Ac8g19481 Beta vulgaris
Eucgr.B00242 Eucalyptus grandis
Eucgr.K01256 Eucalyptus grandis
Eucgr.K01258 Eucalyptus grandis
FAN02G4387 Fragaria x ananassa
FAN04G0370 Fragaria x ananassa
FAN05G0474 Fragaria x ananassa
FAN08G0313 Fragaria x ananassa
FAN09G0455 Fragaria x ananassa
FAN13G3025 Fragaria x ananassa
FAN14G0014 Fragaria x ananassa
FAN15G2158 Fragaria x ananassa
FAN18G4379 Fragaria x ananassa
FAN20G0838 Fragaria x ananassa
FAN24G1112 Fragaria x ananassa
FAN27G3163 Fragaria x ananassa
FvH4_2g06940 Fragaria vesca
FvH4_2g07260 Fragaria vesca
FvH4_4g17680 Fragaria vesca
FvH4_5g05770 Fragaria vesca
FvH4_6g16220 Fragaria vesca
Glyma.03G182800 Glycine max
Glyma.04G186000 Glycine max
Glyma.06G180000 Glycine max
Glyma.10G057100 Glycine max
Glyma.11G194900 Glycine max
Glyma.12G177100 Glycine max
Glyma.13G143600 Glycine max
Glyma.13G323600 Glycine max
Glyma.19G183400 Glycine max
Gohir.A01G140607 Gossypium hirsutum
Gohir.A04G072300 Gossypium hirsutum
Gohir.A09G147700 Gossypium hirsutum
Gohir.A11G324100 Gossypium hirsutum
Gohir.D01G130600 Gossypium hirsutum
Gohir.D03G137250 Gossypium hirsutum
Gohir.D04G110800 Gossypium hirsutum
Gohir.D09G143300 Gossypium hirsutum
Gohir.D11G343200 Gossypium hirsutum
Gorai.002G162100 Gossypium raimondii
Gorai.003G144300 Gossypium raimondii
Gorai.003G146600 Gossypium raimondii
Gorai.006G164800 Gossypium raimondii
Gorai.007G373300 Gossypium raimondii
Gorai.009G415000 Gossypium raimondii
GSVIVG01007689001 Vitis vinifera
GSVIVG01025723001 Vitis vinifera
GSVIVG01031517001 Vitis vinifera
HanXRQChr01g0027621 Helianthus annuus
HanXRQChr11g0346421 Helianthus annuus
HanXRQChr11g0350361 Helianthus annuus
HanXRQChr14g0452581 Helianthus annuus
HanXRQChr14g0454481 Helianthus annuus
Haze_02481 Corylus avellana
Haze_14469 Corylus avellana
Haze_20559 Corylus avellana
Haze_23756 Corylus avellana
Haze_26362 Corylus avellana
Hma1.2p1_0046F.1_g026800 Hydrangea macrophylla
Hma1.2p1_0569F.1_g180270 Hydrangea macrophylla
HPP92_022072 Vanilla planifolia
HPP92_022586 Vanilla planifolia
Hund12087 Selenicereus undatus
Hund20292 Selenicereus undatus
Lalb_Chr02g0155911 Lupinus albus
Lalb_Chr02g0156021 Lupinus albus
Lalb_Chr02g0159421 Lupinus albus
Lalb_Chr06g0171681 Lupinus albus
Lalb_Chr06g0175581 Lupinus albus
Lalb_Chr21g0315001 Lupinus albus
Lalb_Chr25g0289011 Lupinus albus
Lj1A194T70 Lonicera japonica
Lj1A194T72 Lonicera japonica
Lj1g0010086 Lotus japonicus
Lj1g0015371 Lotus japonicus
Lj2A116T69 Lonicera japonica
Lj3C984T7 Lonicera japonica
Lj3g0009007 Lotus japonicus
Lj5g0027153 Lotus japonicus
Lsat_1_v5_gn_1_52021 Lactuca sativa
Lsat_1_v5_gn_1_52061 Lactuca sativa
Lsat_1_v5_gn_1_63140 Lactuca sativa
Lsat_1_v5_gn_1_63160 Lactuca sativa
Lsat_1_v5_gn_2_106721 Lactuca sativa
Manes.04G015800 Manihot esculenta
Manes.06G107800 Manihot esculenta
Manes.08G009500 Manihot esculenta
Manes.09G067260 Manihot esculenta
Manes.11G150300 Manihot esculenta
Mapoly0002s0308 Marchantia polymorpha
Mapoly0029s0002 Marchantia polymorpha
Mapoly0096s0020 Marchantia polymorpha
MBI16_g23862_MAGBIO Magnolia biondii
MBI18_g14000_MAGBIO Magnolia biondii
MBI18_g20771_MAGBIO Magnolia biondii
MBI18_g25265_MAGBIO Magnolia biondii
MCO01G507 Micromonas commoda
MCO01G508 Micromonas commoda
MCO05G732 Micromonas commoda
MD03G1125700 Malus domestica
MD04G1094400 Malus domestica
MD06G1170300 Malus domestica
MD11G1142500 Malus domestica
MD12G1114300 Malus domestica
MD14G1175800 Malus domestica
Medtr1g063380 Medicago truncatula
Medtr2g095210 Medicago truncatula
Medtr2g095320 Medicago truncatula
Medtr7g101870 Medicago truncatula
MELO3C009349.2 Cucumis melo
MELO3C024461.2 Cucumis melo
MELO3C026279.2 Cucumis melo
Migut.D01983 Erythranthe guttata
Migut.D02258 Erythranthe guttata
Migut.J00517 Erythranthe guttata
Migut.N02574 Erythranthe guttata
MSTRG.17778 Avicennia marina
MSTRG.18685 Avicennia marina
MSTRG.21099 Avicennia marina
MSTRG.26696 Avicennia marina
Nitab4.5_0000063g0050 Nicotiana tabacum
Nitab4.5_0000101g0430 Nicotiana tabacum
Nitab4.5_0000106g0380 Nicotiana tabacum
Nitab4.5_0001284g0010 Nicotiana tabacum
Nitab4.5_0001802g0010 Nicotiana tabacum
Nitab4.5_0002129g0040 Nicotiana tabacum
Nitab4.5_0002286g0010 Nicotiana tabacum
Nitab4.5_0002632g0090 Nicotiana tabacum
Nitab4.5_0002845g0060 Nicotiana tabacum
Nitab4.5_0006452g0040 Nicotiana tabacum
Nitab4.5_0006989g0020 Nicotiana tabacum
Nitab4.5_0011159g0010 Nicotiana tabacum
Nn2g11571 Nelumbo nucifera
Nn4g22669 Nelumbo nucifera
Nn8g40578 Nelumbo nucifera
Oeu013536.1 Olea europaea
Oeu014011.1 Olea europaea
Oeu016981.1 Olea europaea
Oeu056286.1 Olea europaea
Os03g0151800 Oryza sativa ssp. japonica
Os08g0413000 Oryza sativa ssp. japonica
Os10g0442600 Oryza sativa ssp. japonica
Peaxi162Scf00088g00061 Petunia axillaris
Peaxi162Scf00089g01628 Petunia axillaris
Peaxi162Scf00311g00045 Petunia axillaris
Peaxi162Scf00389g00949 Petunia axillaris
Peaxi162Scf00701g00515 Petunia axillaris
Peaxi162Scf01159g00110 Petunia axillaris
Peaxi162Scf03841g00002 Petunia axillaris
PGR004G0369 Punica granatum
PGR083G1830 Punica granatum
PGR142G1733 Punica granatum
PGR142G2465 Punica granatum
PGSC0003DMG400010454 Solanum tuberosum
PGSC0003DMG400012003 Solanum tuberosum
PGSC0003DMG400018104 Solanum tuberosum
PGSC0003DMG400019676 Solanum tuberosum
PGSC0003DMG400021556 Solanum tuberosum
Phvul.007G149366 Phaseolus vulgaris
Phvul.007G149432 Phaseolus vulgaris
Phvul.009G175800 Phaseolus vulgaris
Phvul.011G083800 Phaseolus vulgaris
Potri.006G125500 Populus trichocarpa
Potri.012G088200 Populus trichocarpa
Potri.015G080600 Populus trichocarpa
Potri.016G091600 Populus trichocarpa
Potri.017G108200 Populus trichocarpa
Pp3c13_4290 Physcomitrium patens
Pp3c15_10770 Physcomitrium patens
Pp3c26_8300 Physcomitrium patens
Pp3c3_6980 Physcomitrium patens
Pp3c4_26860 Physcomitrium patens
Pp3c7_25950 Physcomitrium patens
Pp3c9_3020 Physcomitrium patens
PRCOL_00000863 Prasinoderma coloniale
PRCOL_00004109 Prasinoderma coloniale
Prupe.4G237600 Prunus persica
Prupe.6G107800 Prunus persica
Prupe.6G233700 Prunus persica
Psat0s2621g0040 Pisum sativum
Psat5g280600 Pisum sativum
Psat6g073160 Pisum sativum
PSO017G4150 Papaver somniferum
PSO063G2537 Papaver somniferum
PSO339G3313 Papaver somniferum
PSO801G0113 Papaver somniferum
PSO832G0543 Papaver somniferum
PSO832G1837 Papaver somniferum
PSO832G3026 Papaver somniferum
QL01p015943 Quercus lobata
QL01p015951 Quercus lobata
QL01p015963 Quercus lobata
QL02p091180 Quercus lobata
QL05p042048 Quercus lobata
QL05p052073 Quercus lobata
QL05p052843 Quercus lobata
QL07p043685 Quercus lobata
QL08p000298 Quercus lobata
QL10p008753 Quercus lobata
RcHm_v2.0_Chr3g0470061 Rosa chinensis
RcHm_v2.0_Chr4g0421621 Rosa chinensis
RcHm_v2.0_Chr6g0259281 Rosa chinensis
RcHm_v2.0_Chr6g0259871 Rosa chinensis
RcHm_v2.0_Chr7g0193051 Rosa chinensis
Rhsim08G0175000 Rhododendron simsii
Rhsim13G0098600 Rhododendron simsii
Rhsim13G0098700 Rhododendron simsii
Sabra06G0099100 Salix brachista
Sabra12G0063000 Salix brachista
Sabra15G0072400 Salix brachista
Sabra15G0104700 Salix brachista
Sabra16G0097300 Salix brachista
SalBow3G0341 Salvia bowleyana
SalBow3G0495 Salvia bowleyana
SalBow3G1235 Salvia bowleyana
SalBow5G2911 Salvia bowleyana
SalBow5G5694 Salvia bowleyana
Sc02g0001700 Simmondsia chinensis
Sc20g0005410 Simmondsia chinensis
Sc20g0005440 Simmondsia chinensis
Sed0003418 Sechium edule
Sed0007648 Sechium edule
Sed0009250 Sechium edule
Sed0013960 Sechium edule
Sed0027845 Sechium edule
SEGI_01673 Sequoiadendron giganteum
SEGI_02788 Sequoiadendron giganteum
SEGI_07061 Sequoiadendron giganteum
SEGI_09723 Sequoiadendron giganteum
SEGI_10853 Sequoiadendron giganteum
SEGI_20551 Sequoiadendron giganteum
SEGI_20763 Sequoiadendron giganteum
SEGI_21910 Sequoiadendron giganteum
SEGI_25498 Sequoiadendron giganteum
SEGI_32518 Sequoiadendron giganteum
SEGI_39741 Sequoiadendron giganteum
SGA_v2.0_scaffold116G32211 Striga asiatica
SGA_v2.0_scaffold127G34040 Striga asiatica
SGA_v2.0_scaffold40G15504 Striga asiatica
SGA_v2.0_scaffold889G53696 Striga asiatica
SHI12473 Sapria himalayana
SMO118G0023 Selaginella moellendorffii
SMO169G0030 Selaginella moellendorffii
Solyc03g112590.4 Solanum lycopersicum
Solyc06g074980.3 Solanum lycopersicum
Solyc09g008070.4 Solanum lycopersicum
Solyc10g084050.2 Solanum lycopersicum
Solyc11g069720.2 Solanum lycopersicum
Sopen03g031660 Solanum pennellii
Sopen06g031380 Solanum pennellii
Sopen09g002870 Solanum pennellii
Sopen10g033500 Solanum pennellii
Sopen11g028560 Solanum pennellii
Sp3g08170 Schrenkiella parvula
Sp5g09110 Schrenkiella parvula
Sp6g39400 Schrenkiella parvula
TAR369G0240 Trochodendron aralioides
TAR445G0001 Trochodendron aralioides
TAR622G1132 Trochodendron aralioides
TAR623G1281 Trochodendron aralioides
TAR629G2012 Trochodendron aralioides
TAR633G2764 Trochodendron aralioides
TAR636G1007 Trochodendron aralioides
THA.LOC104816345 Tarenaya hassleriana
THA.LOC104823234 Tarenaya hassleriana
THA.LOC104823479 Tarenaya hassleriana
THA.LOC104826910 Tarenaya hassleriana
Thecc.05G064700 Theobroma cacao
Thecc.09G347800 Theobroma cacao
Thhalv10000577m.g Eutrema salsugineum
Thhalv10012714m.g Eutrema salsugineum
Thhalv10020085m.g Eutrema salsugineum
TPR.G11434 Trifolium pratense
TPR.G11534 Trifolium pratense
TPR.G20216 Trifolium pratense
TPR.G25422 Trifolium pratense
TPR.G9362 Trifolium pratense
TWI09G1387 Tripterygium wilfordii
TWI53G1848 Tripterygium wilfordii
TWI74G0493 Tripterygium wilfordii
TWI75G1154 Tripterygium wilfordii
TWI77G0991 Tripterygium wilfordii
unitig_22.g6655 Utricularia gibba
unitig_27.g25052 Utricularia gibba
unitig_699.g19190 Utricularia gibba
unitig_8.g3296 Utricularia gibba
vmacro19417 Vaccinium macrocarpon
VMungo0720G2390 Vigna mungo
VMungo1127G0365 Vigna mungo
VMungo1309G1584 Vigna mungo
Zm00001eb004170 Zea mays
Zm00001eb047170 Zea mays
Zm00001eb178950 Zea mays
Zm00001eb222570 Zea mays
Zm00001eb403110 Zea mays

User provided reference genes

Program Settings