Gene: Potri.015G080600

General Information

Structural Information

  • Species Populus trichocarpa
  • Gene Identifier Potri.015G080600
  • Transcript Identifier Potri.015G080600.1
  • Gene Type Coding gene
  • Location Chr15 : 10644794-10648976 : positive

Gene Family Information

  • ID HOM05D000070
  • #Genes/#Species 3945/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • id Potri.015G080600.v4.1
  • pacid 42775092
  • synonym estExt_fgenesh4_pg.C_LG_XV0552

Descriptions

  • Description K13525 - transitional endoplasmic reticulum ATPase (VCP, CDC48)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0051301
ISO
PLAZA Integrative Orthologycell division AT3G09840
GO:0031348
ISO
PLAZA Integrative Orthologynegative regulation of defense response AT3G09840
GO:0031648
ISO
PLAZA Integrative Orthologyprotein destabilization AT3G09840
GO:0009846
ISO
PLAZA Integrative Orthologypollen germination AT3G09840
GO:0046686
ISO
PLAZA Integrative Orthologyresponse to cadmium ion AT3G09840
GO:0009860
ISO
PLAZA Integrative Orthologypollen tube growth AT3G09840

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT3G09840
GO:0016787
IEA
InterProhydrolase activity
GO:0042802
ISO
PLAZA Integrative Orthologyidentical protein binding AT3G09840
GO:0016887
IEA
InterProATP hydrolysis activity
GO:0005524
IEA
InterProATP binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005829
ISO
PLAZA Integrative Orthologycytosol AT3G09840
GO:0005819
ISO
PLAZA Integrative Orthologyspindle AT3G09840
GO:0005618
ISO
PLAZA Integrative Orthologycell wall AT3G09840
GO:0005737
ISO
PLAZA Integrative Orthologycytoplasm AT3G09840
GO:0009506
ISO
PLAZA Integrative Orthologyplasmodesma AT3G09840
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT3G09840
GO:0005811
ISO
PLAZA Integrative Orthologylipid droplet AT3G09840
GO:0005635
ISO
PLAZA Integrative Orthologynuclear envelope AT3G09840
GO:0009524
ISO
PLAZA Integrative Orthologyphragmoplast AT3G09840
GO:0005886
ISO
PLAZA Integrative Orthologyplasma membrane AT3G09840
GO:0005730
ISO
PLAZA Integrative Orthologynucleolus AT3G09840
GO:0005794
ISO
PLAZA Integrative OrthologyGolgi apparatus AT3G09840
GO:0022626
ISO
PLAZA Integrative Orthologycytosolic ribosome AT3G09840

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR003338 CDC48, N-terminal subdomain
IPR041569 AAA ATPase, AAA+ lid domain
IPR027417 P-loop containing nucleoside triphosphate hydrolase
IPR005938 AAA ATPase, CDC48 family
IPR003959 ATPase, AAA-type, core
IPR009010 Aspartate decarboxylase-like domain superfamily
IPR004201 CDC48, domain 2
IPR003593 AAA+ ATPase domain
IPR029067 CDC48 domain 2-like superfamily
IPR015415 Vps4 oligomerisation, C-terminal
Mapman id Description
19.2.4.1.1 Protein homeostasis.ubiquitin-proteasome system.membrane-associated protein degradation.CDC48-NPL4-UFD1 chaperone complex.platform ATPase component CDC48