Gene: Pp3c13_4290

General Information

Structural Information

  • Species Physcomitrium patens
  • Gene Identifier Pp3c13_4290
  • Transcript Identifier Pp3c13_4290V3.3
  • Gene Type Coding gene
  • Location Chr13 : 2663579-2668278 : positive

Gene Family Information

  • ID HOM05D000070
  • #Genes/#Species 3945/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • name Pp3c13_4290V3.3
  • pacid 32930073
  • alias Pp1s133_13V6
  • alias Phypa_167011
  • alias Phpat.013G013400
  • uniprot A0A2K1JKT1

Descriptions

  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0031648
ISO
PLAZA Integrative Orthologyprotein destabilization AT3G09840
GO:0046686
ISO
PLAZA Integrative Orthologyresponse to cadmium ion AT3G09840
GO:0009846
ISO
PLAZA Integrative Orthologypollen germination AT3G09840
GO:0051301
ISO
PLAZA Integrative Orthologycell division AT3G09840
GO:0009860
ISO
PLAZA Integrative Orthologypollen tube growth AT3G09840
GO:0031348
ISO
PLAZA Integrative Orthologynegative regulation of defense response AT3G09840
GO:0097352
IBA
GOA Databaseautophagosome maturation
GO:0071712
IBA
GOA DatabaseER-associated misfolded protein catabolic process
GO:0051228
IBA
GOA Databasemitotic spindle disassembly
GO:0030970
IBA
GOA Databaseretrograde protein transport, ER to cytosol
GO:0030433
IBA
GOA Databaseubiquitin-dependent ERAD pathway

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT3G09840
GO:0016887
IEA
InterProATP hydrolysis activity
GO:0016787
IEA
GOA Databasehydrolase activity
GO:0016787
IEA
InterProhydrolase activity
GO:0000166
IEA
GOA Databasenucleotide binding
GO:0005524
IEA
GOA DatabaseATP binding
GO:0005524
IEA
InterProATP binding
GO:0031593
IBA
GOA Databasepolyubiquitin modification-dependent protein binding
GO:0042802
ISO
PLAZA Integrative Orthologyidentical protein binding AT3G09840

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005794
ISO
PLAZA Integrative OrthologyGolgi apparatus AT3G09840
GO:0005730
ISO
PLAZA Integrative Orthologynucleolus AT3G09840
GO:0005886
ISO
PLAZA Integrative Orthologyplasma membrane AT3G09840
GO:0009524
ISO
PLAZA Integrative Orthologyphragmoplast AT3G09840
GO:0005635
ISO
PLAZA Integrative Orthologynuclear envelope AT3G09840
GO:0005811
ISO
PLAZA Integrative Orthologylipid droplet AT3G09840
GO:0009506
ISO
PLAZA Integrative Orthologyplasmodesma AT3G09840
GO:0005737
ISO
PLAZA Integrative Orthologycytoplasm AT3G09840
GO:0005618
ISO
PLAZA Integrative Orthologycell wall AT3G09840
GO:0005819
ISO
PLAZA Integrative Orthologyspindle AT3G09840
GO:0034098
IBA
GOA DatabaseVCP-NPL4-UFD1 AAA ATPase complex
GO:0005829
IBA
GOA Databasecytosol
GO:0005634
IBA
GOA Databasenucleus
GO:0022626
ISO
PLAZA Integrative Orthologycytosolic ribosome AT3G09840

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR027417 P-loop containing nucleoside triphosphate hydrolase
IPR003338 CDC48, N-terminal subdomain
IPR009010 Aspartate decarboxylase-like domain superfamily
IPR004201 CDC48, domain 2
IPR003593 AAA+ ATPase domain
IPR029067 CDC48 domain 2-like superfamily
IPR015415 Vps4 oligomerisation, C-terminal
IPR003959 ATPase, AAA-type, core
IPR041569 AAA ATPase, AAA+ lid domain
IPR005938 AAA ATPase, CDC48 family
Mapman id Description
19.2.4.1.1 Protein homeostasis.ubiquitin-proteasome system.membrane-associated protein degradation.CDC48-NPL4-UFD1 chaperone complex.platform ATPase component CDC48