Gene: AT3G09840

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT3G09840
  • Transcript Identifier AT3G09840.1
  • Gene Type Coding gene
  • Location Chr3 : 3019494-3022832 : positive

Gene Family Information

  • ID HOM05D000070
  • #Genes/#Species 3945/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT3G09840.1
  • symbol CDC48
  • Alias ATCDC48,CDC48A
  • uniprot P54609

Descriptions

  • Description cell division cycle 48
  • Computational description cell division cycle 48 (CDC48); FUNCTIONS IN: ATPase activity, identical protein binding; INVOLVED IN: response to cadmium ion, pollen germination, pollen tube growth, cell division, phosphorylation; LOCATED IN: in 9 components; EXPRESSED IN: 33 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: ATPase, AAA-type, CDC48 protein (TAIR:AT5G03340.1); Has 66378 Blast hits to 39099 proteins in 3298 species: Archae - 1713; Bacteria - 29252; Metazoa - 8676; Fungi - 6302; Plants - 5800; Viruses - 77; Other Eukaryotes - 14558 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0030433
IBA
Gene Ontologyubiquitin-dependent ERAD pathway1
GO:0051228
IBA
Gene Ontologymitotic spindle disassembly1
GO:0046686
IEP
GOA Databaseresponse to cadmium ion
GO:0007049
IEA
GOA Databasecell cycle
GO:0051301
IEA
GOA Databasecell division
GO:0051301
IMP
Gene Ontologycell division2
GO:0015031
IEA
GOA Databaseprotein transport
GO:0009846
IMP
Gene Ontologypollen germination2
GO:0009860
IMP
Gene Ontologypollen tube growth2
GO:0031348
IMP
Gene Ontologynegative regulation of defense response3
GO:0031648
IMP
Gene Ontologyprotein destabilization3
GO:0030970
IBA
Gene Ontologyretrograde protein transport, ER to cytosol1
GO:0097352
IBA
Gene Ontologyautophagosome maturation1
GO:0071712
IBA
Gene OntologyER-associated misfolded protein catabolic process1

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016887
IBA
Gene OntologyATP hydrolysis activity1
GO:0016887
IEA
InterProATP hydrolysis activity
GO:0000166
IEA
GOA Databasenucleotide binding
GO:0005524
IEA
GOA DatabaseATP binding
GO:0005524
IEA
InterProATP binding
GO:0016787
IEA
Gene Ontologyhydrolase activity
GO:0016787
IEA
InterProhydrolase activity
GO:0005515
IPI
Gene Ontologyprotein binding4
GO:0042802
IPI
Gene Ontologyidentical protein binding5
GO:0031593
IBA
Gene Ontologypolyubiquitin modification-dependent protein binding1

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005829
IDA
GOA Databasecytosol
GO:0005829
HDA
IBA
Gene Ontologycytosol1 6
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
IDA
IBA
Gene Ontologynucleus1 7
GO:0005886
IDA
IEA
GOA Databaseplasma membrane
GO:0005886
HDA
ISM
Gene Ontologyplasma membrane8
GO:0009524
IEA
GOA Databasephragmoplast
GO:0009524
IDA
Gene Ontologyphragmoplast2
GO:0005618
IDA
GOA Databasecell wall
GO:0005794
IDA
GOA DatabaseGolgi apparatus
GO:0005794
HDA
Gene OntologyGolgi apparatus9
GO:0022626
IDA
GOA Databasecytosolic ribosome
GO:0022626
HDA
Gene Ontologycytosolic ribosome10
GO:0034098
IBA
Gene OntologyVCP-NPL4-UFD1 AAA ATPase complex1
GO:0009506
IDA
GOA Databaseplasmodesma
GO:0009506
HDA
Gene Ontologyplasmodesma11
GO:0005856
IEA
GOA Databasecytoskeleton
GO:0016020
IEA
GOA Databasemembrane
GO:0005737
IEA
GOA Databasecytoplasm
GO:0005737
IDA
Gene Ontologycytoplasm7
GO:0009505
HDA
Gene Ontologyplant-type cell wall12
GO:0005635
IDA
Gene Ontologynuclear envelope2
GO:0005730
IDA
Gene Ontologynucleolus2
GO:0005819
IDA
Gene Ontologyspindle2
GO:0005811
IDA
Gene Ontologylipid droplet13

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR005938 AAA ATPase, CDC48 family
IPR009010 Aspartate decarboxylase-like domain superfamily
IPR027417 P-loop containing nucleoside triphosphate hydrolase
IPR003593 AAA+ ATPase domain
IPR029067 CDC48 domain 2-like superfamily
IPR004201 CDC48, domain 2
IPR041569 AAA ATPase, AAA+ lid domain
IPR003959 ATPase, AAA-type, core
IPR003338 CDC48, N-terminal subdomain
Mapman id Description
19.2.4.1.1 Protein homeostasis.ubiquitin-proteasome system.membrane-associated protein degradation.CDC48-NPL4-UFD1 chaperone complex.platform ATPase component CDC48