Gene: AT3G09840
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT3G09840
- Transcript Identifier AT3G09840.1
- Gene Type Coding gene
- Location Chr3 : 3019494-3022832 : positive
Gene Family Information
- ID HOM05D000070
- #Genes/#Species 3945/100
- Phylogenetic origin
- ID ORTHO05D001255
- #Genes/#Species 446/100
- Phylogenetic origin
Gene Duplication Information
- Block Duplication Block duplicate
Labels
Identifiers
- tid AT3G09840.1
- symbol CDC48
- Alias ATCDC48,CDC48A
- uniprot P54609
Descriptions
- Description cell division cycle 48
- Computational description cell division cycle 48 (CDC48); FUNCTIONS IN: ATPase activity, identical protein binding; INVOLVED IN: response to cadmium ion, pollen germination, pollen tube growth, cell division, phosphorylation; LOCATED IN: in 9 components; EXPRESSED IN: 33 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: ATPase, AAA-type, CDC48 protein (TAIR:AT5G03340.1); Has 66378 Blast hits to 39099 proteins in 3298 species: Archae - 1713; Bacteria - 29252; Metazoa - 8676; Fungi - 6302; Plants - 5800; Viruses - 77; Other Eukaryotes - 14558 (source: NCBI BLink).
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
GO term | Evidence(s) | Provider(s) | Description | Source(s) |
---|---|---|---|---|
GO:0030433 | IBA | Gene Ontology | ubiquitin-dependent ERAD pathway | 1 |
GO:0051228 | IBA | Gene Ontology | mitotic spindle disassembly | 1 |
GO:0046686 | IEP | GOA Database | response to cadmium ion | |
GO:0007049 | IEA | GOA Database | cell cycle | |
GO:0051301 | IEA | GOA Database | cell division | |
GO:0051301 | IMP | Gene Ontology | cell division | 2 |
GO:0015031 | IEA | GOA Database | protein transport | |
GO:0009846 | IMP | Gene Ontology | pollen germination | 2 |
GO:0009860 | IMP | Gene Ontology | pollen tube growth | 2 |
GO:0031348 | IMP | Gene Ontology | negative regulation of defense response | 3 |
GO:0031648 | IMP | Gene Ontology | protein destabilization | 3 |
GO:0030970 | IBA | Gene Ontology | retrograde protein transport, ER to cytosol | 1 |
GO:0097352 | IBA | Gene Ontology | autophagosome maturation | 1 |
GO:0071712 | IBA | Gene Ontology | ER-associated misfolded protein catabolic process | 1 |
Molecular Function
GO term | Evidence(s) | Provider(s) | Description | Source(s) |
---|---|---|---|---|
GO:0016887 | IBA | Gene Ontology | ATP hydrolysis activity | 1 |
GO:0016887 | IEA | InterPro | ATP hydrolysis activity | |
GO:0000166 | IEA | GOA Database | nucleotide binding | |
GO:0005524 | IEA | GOA Database | ATP binding | |
GO:0005524 | IEA | InterPro | ATP binding | |
GO:0016787 | IEA | Gene Ontology | hydrolase activity | |
GO:0016787 | IEA | InterPro | hydrolase activity | |
GO:0005515 | IPI | Gene Ontology | protein binding | 4 |
GO:0042802 | IPI | Gene Ontology | identical protein binding | 5 |
GO:0031593 | IBA | Gene Ontology | polyubiquitin modification-dependent protein binding | 1 |
Cellular Component
GO term | Evidence(s) | Provider(s) | Description | Source(s) |
---|---|---|---|---|
GO:0005829 | IDA | GOA Database | cytosol | |
GO:0005829 | HDA IBA | Gene Ontology | cytosol | 1 6 |
GO:0005634 | IEA | GOA Database | nucleus | |
GO:0005634 | IDA IBA | Gene Ontology | nucleus | 1 7 |
GO:0005886 | IDA IEA | GOA Database | plasma membrane | |
GO:0005886 | HDA ISM | Gene Ontology | plasma membrane | 8 |
GO:0009524 | IEA | GOA Database | phragmoplast | |
GO:0009524 | IDA | Gene Ontology | phragmoplast | 2 |
GO:0005618 | IDA | GOA Database | cell wall | |
GO:0005794 | IDA | GOA Database | Golgi apparatus | |
GO:0005794 | HDA | Gene Ontology | Golgi apparatus | 9 |
GO:0022626 | IDA | GOA Database | cytosolic ribosome | |
GO:0022626 | HDA | Gene Ontology | cytosolic ribosome | 10 |
GO:0034098 | IBA | Gene Ontology | VCP-NPL4-UFD1 AAA ATPase complex | 1 |
GO:0009506 | IDA | GOA Database | plasmodesma | |
GO:0009506 | HDA | Gene Ontology | plasmodesma | 11 |
GO:0005856 | IEA | GOA Database | cytoskeleton | |
GO:0016020 | IEA | GOA Database | membrane | |
GO:0005737 | IEA | GOA Database | cytoplasm | |
GO:0005737 | IDA | Gene Ontology | cytoplasm | 7 |
GO:0009505 | HDA | Gene Ontology | plant-type cell wall | 12 |
GO:0005635 | IDA | Gene Ontology | nuclear envelope | 2 |
GO:0005730 | IDA | Gene Ontology | nucleolus | 2 |
GO:0005819 | IDA | Gene Ontology | spindle | 2 |
GO:0005811 | IDA | Gene Ontology | lipid droplet | 13 |
Color Legend
Experimental Evidence |
Computational Reviewed Evidence |
Electronic Evidence |
InterPro | Description |
---|---|
IPR005938 | AAA ATPase, CDC48 family |
IPR009010 | Aspartate decarboxylase-like domain superfamily |
IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
IPR003593 | AAA+ ATPase domain |
IPR029067 | CDC48 domain 2-like superfamily |
IPR004201 | CDC48, domain 2 |
IPR041569 | AAA ATPase, AAA+ lid domain |
IPR003959 | ATPase, AAA-type, core |
IPR003338 | CDC48, N-terminal subdomain |
Mapman id | Description |
---|---|
19.2.4.1.1 | Protein homeostasis.ubiquitin-proteasome system.membrane-associated protein degradation.CDC48-NPL4-UFD1 chaperone complex.platform ATPase component CDC48 |