Gene: AT5G03340

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT5G03340
  • Transcript Identifier AT5G03340.1
  • Gene Type Coding gene
  • Location Chr5 : 810091-813133 : negative

Gene Family Information

  • ID HOM05D000070
  • #Genes/#Species 3945/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT5G03340.1
  • symbol AtCDC48C
  • full_name cell division cycle 48C
  • uniprot Q9LZF6

Descriptions

  • Description ATPase, AAA-type, CDC48 protein
  • Computational description ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: protein binding, ATPase activity; LOCATED IN: cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: cell division cycle 48 (TAIR:AT3G09840.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0015031
IEA
GOA Databaseprotein transport
GO:0051301
IEA
GOA Databasecell division
GO:0007049
IEA
GOA Databasecell cycle
GO:0051228
IBA
Gene Ontologymitotic spindle disassembly1
GO:0030433
IBA
Gene Ontologyubiquitin-dependent ERAD pathway1
GO:0097352
IBA
Gene Ontologyautophagosome maturation1
GO:0071712
IBA
Gene OntologyER-associated misfolded protein catabolic process1
GO:0030970
IBA
Gene Ontologyretrograde protein transport, ER to cytosol1

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016787
IEA
Gene Ontologyhydrolase activity
GO:0016787
IEA
InterProhydrolase activity
GO:0016887
IBA
Gene OntologyATP hydrolysis activity1
GO:0016887
IEA
InterProATP hydrolysis activity
GO:0005524
IEA
GOA DatabaseATP binding
GO:0005524
IEA
InterProATP binding
GO:0000166
IEA
GOA Databasenucleotide binding
GO:0031593
IBA
Gene Ontologypolyubiquitin modification-dependent protein binding1
GO:0005515
IPI
Gene Ontologyprotein binding2

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0034098
IBA
Gene OntologyVCP-NPL4-UFD1 AAA ATPase complex1
GO:0005737
IEA
GOA Databasecytoplasm
GO:0005856
IEA
GOA Databasecytoskeleton
GO:0005829
IDA
GOA Databasecytosol
GO:0005829
IBA
Gene Ontologycytosol1
GO:0005794
IDA
GOA DatabaseGolgi apparatus
GO:0005794
HDA
Gene OntologyGolgi apparatus3
GO:0005618
IDA
GOA Databasecell wall
GO:0009524
IEA
GOA Databasephragmoplast
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
ISM, IBA
Gene Ontologynucleus1
GO:0005886
HDA
ISM
Gene Ontologyplasma membrane4
GO:0009505
HDA
Gene Ontologyplant-type cell wall5

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR003338 CDC48, N-terminal subdomain
IPR003959 ATPase, AAA-type, core
IPR027417 P-loop containing nucleoside triphosphate hydrolase
IPR029067 CDC48 domain 2-like superfamily
IPR041569 AAA ATPase, AAA+ lid domain
IPR004201 CDC48, domain 2
IPR003593 AAA+ ATPase domain
IPR009010 Aspartate decarboxylase-like domain superfamily
IPR005938 AAA ATPase, CDC48 family
Mapman id Description
19.2.4.1.1 Protein homeostasis.ubiquitin-proteasome system.membrane-associated protein degradation.CDC48-NPL4-UFD1 chaperone complex.platform ATPase component CDC48