Notice (8): Undefined variable: source_groups_information [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D001255', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '446', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false, 'has_blast_db' => true ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A01p42100' => 'bna', 'A03p01140' => 'bna', 'A03p35810' => 'bna', 'A05p39210' => 'bna', 'A07p21450' => 'bna', 'A09p46200' => 'bna', 'Aa31LG10G8420' => 'aar', 'Aa31LG3G2300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3050' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3060' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1131' => 'aag', 'Actinidia13073' => 'ach', 'Actinidia24129' => 'ach', 'Actinidia28900' => 'ach', 'Ah.08g211660' => 'amhyb', 'Ah.14g085860' => 'amhyb', 'AL3G21070' => 'aly', 'AL5G34110' => 'aly', 'AL6G12670' => 'aly', 'Aqoxy2G01785' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N72S3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S6Q2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87HTU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F2DT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSV57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7JGCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF2L6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R086A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UBK6DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAKG1R' => 'arhy', 'AT3G09840' => 'ath', 'AT3G53230' => 'ath', 'AT5G03340' => 'ath', 'ATR1132G014' => 'atr', 'ATR1152G092' => 'atr', 'Atru.chr3.3556' => 'acertr', 'Atru.chr8.1826' => 'acertr', 'Atru.chr9.2536' => 'acertr', 'AUR62008175' => 'cqu', 'AUR62026909' => 'cqu', 'AUR62038585' => 'cqu', 'AUR62039867' => 'cqu', 'AUR62040576' => 'cqu', 'AUR62042049' => 'cqu', 'BcaB01g05824' => 'bca', 'BcaB01g05845' => 'bca', 'BcaB02g07800' => 'bca', 'BcaB03g11585' => 'bca', 'BcaB04g21241' => 'bca', 'BcaC01g04249' => 'bca', 'BcaC05g29495' => 'bca', 'BcaC05g29706' => 'bca', 'BcaC07g39682' => 'bca', 'BcaC09g48122' => 'bca', 'BcaNung06804' => 'bca', 'BolC1t05429H' => 'bol', 'BolC3t12701H' => 'bol', 'BolC3t16617H' => 'bol', 'BolC5t34480H' => 'bol', 'BolC6t37291H' => 'bol', 'BolC8t50453H' => 'bol', 'BraA01t04278Z' => 'bra', 'BraA03t09495Z' => 'bra', 'BraA03t12753Z' => 'bra', 'BraA05t22710Z' => 'bra', 'BraA07t29832Z' => 'bra', 'BraA09t40084Z' => 'bra', 'C03p01450' => 'bna', 'C03p43460' => 'bna', 'C05p58260' => 'bna', 'C06p21060' => 'bna', 'C08p28450' => 'bna', 'CAN.G1166.32' => 'can', 'CAN.G1169.14' => 'can', 'CAN.G1755.4' => 'can', 'CAN.G309.14' => 'can', 'CAN.G900.46' => 'can', 'CANSAT54G1454' => 'cansat', 'CANSAT80G1774' => 'cansat', 'CARHR163070' => 'chi', 'CARHR272090' => 'chi', 'Carub.0003s0893' => 'cru', 'Carub.0005s1976' => 'cru', 'Carub.0006s0215' => 'cru', 'Ca_01389_v3' => 'car', 'Ca_08858_v3' => 'car', 'Ca_11493_v3' => 'car', 'CBR_g8453' => 'cbr', 'Cc01_g10600' => 'ccan', 'Cc02_g15090' => 'ccan', 'Cc04_g12540' => 'ccan', 'Cc06_g04140' => 'ccan', 'Cc06_g17260' => 'ccan', 'CDE02G3027' => 'cde', 'CDE06G0560' => 'cde', 'CDE06G2269' => 'cde', 'CDE07G1125' => 'cde', 'CDE11G0622' => 'cde', 'Cfa010317' => 'cfa', 'Cfa010348' => 'cfa', 'Cfa017590' => 'cfa', 'Ciclev10011046m.g' => 'ccl', 'Ciclev10013552m.g' => 'ccl', 'Ciclev10018887m.g' => 'ccl', 'Ciclev10024348m.g' => 'ccl', 'Ciclev10027840m.g' => 'ccl', 'CiPaw.09G173400' => 'cil', 'CiPaw.13G118100' => 'cil', 'CiPaw.13G118200' => 'cil', 'ClCG04G009260' => 'cla', 'ClCG06G017170' => 'cla', 'ClCG10G020200' => 'cla', 'COL.COLO4_03885' => 'col', 'COL.COLO4_17360' => 'col', 'COL.COLO4_25876' => 'col', 'COL.COLO4_25881' => 'col', 'COL.COLO4_25891' => 'col', 'COL.COLO4_26975' => 'col', 'COL.COLO4_34704' => 'col', 'Cpa.g.sc153.17' => 'cpa', 'Cpa.g.sc56.23' => 'cpa', 'Cpa.g.sc56.24' => 'cpa', 'Cre06.g269950' => 'cre', 'CsaV3_1G001310' => 'csa', 'CsaV3_3G035900' => 'csa', 'CsaV3_6G039850' => 'csa', 'CSS0008341' => 'camsi', 'CSS0009178' => 'camsi', 'CSS0039212' => 'camsi', 'CSS0041444' => 'camsi', 'DCAR_014993' => 'dca', 'DCAR_016471' => 'dca', 'DCAR_017688' => 'dca', 'DCAR_020824' => 'dca', 'Dinv20622' => 'din', 'Dinv29354' => 'din', 'Dinv34699' => 'din', 'Dinv35778' => 'din', 'Dinv37306' => 'din', 'Duzib093G0198' => 'dzi', 'Duzib106G1759' => 'dzi', 'Duzib128G1076' => 'dzi', 'Duzib150G1429' => 'dzi', 'Duzib170G0362' => 'dzi', 'ECA238G0239' => 'eca', 'ECA248G0147' => 'eca', 'ECA248G2986' => 'eca', 'ECA248G3803' => 'eca', 'EL10Ac7g16618' => 'bvu', 'EL10Ac8g19480' => 'bvu', 'EL10Ac8g19481' => 'bvu', 'Eucgr.B00242' => 'egr', 'Eucgr.K01256' => 'egr', 'Eucgr.K01258' => 'egr', 'FAN02G4387' => 'fan', 'FAN04G0370' => 'fan', 'FAN05G0474' => 'fan', 'FAN08G0313' => 'fan', 'FAN09G0455' => 'fan', 'FAN13G3025' => 'fan', 'FAN14G0014' => 'fan', 'FAN15G2158' => 'fan', 'FAN18G4379' => 'fan', 'FAN20G0838' => 'fan', 'FAN24G1112' => 'fan', 'FAN27G3163' => 'fan', 'FvH4_2g06940' => 'fve', 'FvH4_2g07260' => 'fve', 'FvH4_4g17680' => 'fve', 'FvH4_5g05770' => 'fve', 'FvH4_6g16220' => 'fve', 'Glyma.03G182800' => 'gma', 'Glyma.04G186000' => 'gma', 'Glyma.06G180000' => 'gma', 'Glyma.10G057100' => 'gma', 'Glyma.11G194900' => 'gma', 'Glyma.12G177100' => 'gma', 'Glyma.13G143600' => 'gma', 'Glyma.13G323600' => 'gma', 'Glyma.19G183400' => 'gma', 'Gohir.A01G140607' => 'ghi', 'Gohir.A04G072300' => 'ghi', 'Gohir.A09G147700' => 'ghi', 'Gohir.A11G324100' => 'ghi', 'Gohir.D01G130600' => 'ghi', 'Gohir.D03G137250' => 'ghi', 'Gohir.D04G110800' => 'ghi', 'Gohir.D09G143300' => 'ghi', 'Gohir.D11G343200' => 'ghi', 'Gorai.002G162100' => 'gra', 'Gorai.003G144300' => 'gra', 'Gorai.003G146600' => 'gra', 'Gorai.006G164800' => 'gra', 'Gorai.007G373300' => 'gra', 'Gorai.009G415000' => 'gra', 'GSVIVG01007689001' => 'vvi', 'GSVIVG01025723001' => 'vvi', 'GSVIVG01031517001' => 'vvi', 'HanXRQChr01g0027621' => 'han', 'HanXRQChr11g0346421' => 'han', 'HanXRQChr11g0350361' => 'han', 'HanXRQChr14g0452581' => 'han', 'HanXRQChr14g0454481' => 'han', 'Haze_02481' => 'cav', 'Haze_14469' => 'cav', 'Haze_20559' => 'cav', 'Haze_23756' => 'cav', 'Haze_26362' => 'cav', 'Hma1.2p1_0046F.1_g026800' => 'hma', 'Hma1.2p1_0569F.1_g180270' => 'hma', 'HPP92_022072' => 'vpl', 'HPP92_022586' => 'vpl', 'Hund12087' => 'sun', 'Hund20292' => 'sun', 'Lalb_Chr02g0155911' => 'lal', 'Lalb_Chr02g0156021' => 'lal', 'Lalb_Chr02g0159421' => 'lal', 'Lalb_Chr06g0171681' => 'lal', 'Lalb_Chr06g0175581' => 'lal', 'Lalb_Chr21g0315001' => 'lal', 'Lalb_Chr25g0289011' => 'lal', 'Lj1A194T70' => 'lonja', 'Lj1A194T72' => 'lonja', 'Lj1g0010086' => 'lja', 'Lj1g0015371' => 'lja', 'Lj2A116T69' => 'lonja', 'Lj3C984T7' => 'lonja', 'Lj3g0009007' => 'lja', 'Lj5g0027153' => 'lja', 'Lsat_1_v5_gn_1_52021' => 'lsa', 'Lsat_1_v5_gn_1_52061' => 'lsa', 'Lsat_1_v5_gn_1_63140' => 'lsa', 'Lsat_1_v5_gn_1_63160' => 'lsa', 'Lsat_1_v5_gn_2_106721' => 'lsa', 'Manes.04G015800' => 'mes', 'Manes.06G107800' => 'mes', 'Manes.08G009500' => 'mes', 'Manes.09G067260' => 'mes', 'Manes.11G150300' => 'mes', 'Mapoly0002s0308' => 'mpo', 'Mapoly0029s0002' => 'mpo', 'Mapoly0096s0020' => 'mpo', 'MBI16_g23862_MAGBIO' => 'mbi', 'MBI18_g14000_MAGBIO' => 'mbi', 'MBI18_g20771_MAGBIO' => 'mbi', 'MBI18_g25265_MAGBIO' => 'mbi', 'MCO01G507' => 'mco', 'MCO01G508' => 'mco', 'MCO05G732' => 'mco', 'MD03G1125700' => 'mdo', 'MD04G1094400' => 'mdo', 'MD06G1170300' => 'mdo', 'MD11G1142500' => 'mdo', 'MD12G1114300' => 'mdo', 'MD14G1175800' => 'mdo', 'Medtr1g063380' => 'mtr', 'Medtr2g095210' => 'mtr', 'Medtr2g095320' => 'mtr', 'Medtr7g101870' => 'mtr', 'MELO3C009349.2' => 'cme', 'MELO3C024461.2' => 'cme', 'MELO3C026279.2' => 'cme', 'Migut.D01983' => 'egut', 'Migut.D02258' => 'egut', 'Migut.J00517' => 'egut', 'Migut.N02574' => 'egut', 'MSTRG.17778' => 'ama', 'MSTRG.18685' => 'ama', 'MSTRG.21099' => 'ama', 'MSTRG.26696' => 'ama', 'Nitab4.5_0000063g0050' => 'nta', 'Nitab4.5_0000101g0430' => 'nta', 'Nitab4.5_0000106g0380' => 'nta', 'Nitab4.5_0001284g0010' => 'nta', 'Nitab4.5_0001802g0010' => 'nta', 'Nitab4.5_0002129g0040' => 'nta', 'Nitab4.5_0002286g0010' => 'nta', 'Nitab4.5_0002632g0090' => 'nta', 'Nitab4.5_0002845g0060' => 'nta', 'Nitab4.5_0006452g0040' => 'nta', 'Nitab4.5_0006989g0020' => 'nta', 'Nitab4.5_0011159g0010' => 'nta', 'Nn2g11571' => 'nnu', 'Nn4g22669' => 'nnu', 'Nn8g40578' => 'nnu', 'Oeu013536.1' => 'oeu', 'Oeu014011.1' => 'oeu', 'Oeu016981.1' => 'oeu', 'Oeu056286.1' => 'oeu', 'Os03g0151800' => 'osa', 'Os08g0413000' => 'osa', 'Os10g0442600' => 'osa', 'Peaxi162Scf00088g00061' => 'pax', 'Peaxi162Scf00089g01628' => 'pax', 'Peaxi162Scf00311g00045' => 'pax', 'Peaxi162Scf00389g00949' => 'pax', 'Peaxi162Scf00701g00515' => 'pax', 'Peaxi162Scf01159g00110' => 'pax', 'Peaxi162Scf03841g00002' => 'pax', 'PGR004G0369' => 'pgr', 'PGR083G1830' => 'pgr', 'PGR142G1733' => 'pgr', 'PGR142G2465' => 'pgr', 'PGSC0003DMG400010454' => 'stu', 'PGSC0003DMG400012003' => 'stu', 'PGSC0003DMG400018104' => 'stu', 'PGSC0003DMG400019676' => 'stu', 'PGSC0003DMG400021556' => 'stu', 'Phvul.007G149366' => 'pvu', 'Phvul.007G149432' => 'pvu', 'Phvul.009G175800' => 'pvu', 'Phvul.011G083800' => 'pvu', 'Potri.006G125500' => 'ptr', 'Potri.012G088200' => 'ptr', 'Potri.015G080600' => 'ptr', 'Potri.016G091600' => 'ptr', 'Potri.017G108200' => 'ptr', 'Pp3c13_4290' => 'ppa', 'Pp3c15_10770' => 'ppa', 'Pp3c26_8300' => 'ppa', 'Pp3c3_6980' => 'ppa', 'Pp3c4_26860' => 'ppa', 'Pp3c7_25950' => 'ppa', 'Pp3c9_3020' => 'ppa', 'PRCOL_00000863' => 'pco', 'PRCOL_00004109' => 'pco', 'Prupe.4G237600' => 'ppe', 'Prupe.6G107800' => 'ppe', 'Prupe.6G233700' => 'ppe', 'Psat0s2621g0040' => 'psa', 'Psat5g280600' => 'psa', 'Psat6g073160' => 'psa', 'PSO017G4150' => 'pso', 'PSO063G2537' => 'pso', 'PSO339G3313' => 'pso', 'PSO801G0113' => 'pso', 'PSO832G0543' => 'pso', 'PSO832G1837' => 'pso', 'PSO832G3026' => 'pso', 'QL01p015943' => 'qlo', 'QL01p015951' => 'qlo', 'QL01p015963' => 'qlo', 'QL02p091180' => 'qlo', 'QL05p042048' => 'qlo', 'QL05p052073' => 'qlo', 'QL05p052843' => 'qlo', 'QL07p043685' => 'qlo', 'QL08p000298' => 'qlo', 'QL10p008753' => 'qlo', 'RcHm_v2.0_Chr3g0470061' => 'rch', 'RcHm_v2.0_Chr4g0421621' => 'rch', 'RcHm_v2.0_Chr6g0259281' => 'rch', 'RcHm_v2.0_Chr6g0259871' => 'rch', 'RcHm_v2.0_Chr7g0193051' => 'rch', 'Rhsim08G0175000' => 'rsi', 'Rhsim13G0098600' => 'rsi', 'Rhsim13G0098700' => 'rsi', 'Sabra06G0099100' => 'sbr', 'Sabra12G0063000' => 'sbr', 'Sabra15G0072400' => 'sbr', 'Sabra15G0104700' => 'sbr', 'Sabra16G0097300' => 'sbr', 'SalBow3G0341' => 'sbo', 'SalBow3G0495' => 'sbo', 'SalBow3G1235' => 'sbo', 'SalBow5G2911' => 'sbo', 'SalBow5G5694' => 'sbo', 'Sc02g0001700' => 'sci', 'Sc20g0005410' => 'sci', 'Sc20g0005440' => 'sci', 'Sed0003418' => 'sed', 'Sed0007648' => 'sed', 'Sed0009250' => 'sed', 'Sed0013960' => 'sed', 'Sed0027845' => 'sed', 'SEGI_01673' => 'sgi', 'SEGI_02788' => 'sgi', 'SEGI_07061' => 'sgi', 'SEGI_09723' => 'sgi', 'SEGI_10853' => 'sgi', 'SEGI_20551' => 'sgi', 'SEGI_20763' => 'sgi', 'SEGI_21910' => 'sgi', 'SEGI_25498' => 'sgi', 'SEGI_32518' => 'sgi', 'SEGI_39741' => 'sgi', 'SGA_v2.0_scaffold116G32211' => 'sas', 'SGA_v2.0_scaffold127G34040' => 'sas', 'SGA_v2.0_scaffold40G15504' => 'sas', 'SGA_v2.0_scaffold889G53696' => 'sas', 'SHI12473' => 'shi', 'SMO118G0023' => 'smo', 'SMO169G0030' => 'smo', 'Solyc03g112590.4' => 'sly', 'Solyc06g074980.3' => 'sly', 'Solyc09g008070.4' => 'sly', 'Solyc10g084050.2' => 'sly', 'Solyc11g069720.2' => 'sly', 'Sopen03g031660' => 'spe', 'Sopen06g031380' => 'spe', 'Sopen09g002870' => 'spe', 'Sopen10g033500' => 'spe', 'Sopen11g028560' => 'spe', 'Sp3g08170' => 'spa', 'Sp5g09110' => 'spa', 'Sp6g39400' => 'spa', 'TAR369G0240' => 'tar', 'TAR445G0001' => 'tar', 'TAR622G1132' => 'tar', 'TAR623G1281' => 'tar', 'TAR629G2012' => 'tar', 'TAR633G2764' => 'tar', 'TAR636G1007' => 'tar', 'THA.LOC104816345' => 'tha', 'THA.LOC104823234' => 'tha', 'THA.LOC104823479' => 'tha', 'THA.LOC104826910' => 'tha', 'Thecc.05G064700' => 'tca', 'Thecc.09G347800' => 'tca', 'Thhalv10000577m.g' => 'esa', 'Thhalv10012714m.g' => 'esa', 'Thhalv10020085m.g' => 'esa', 'TPR.G11434' => 'tpr', 'TPR.G11534' => 'tpr', 'TPR.G20216' => 'tpr', 'TPR.G25422' => 'tpr', 'TPR.G9362' => 'tpr', 'TWI09G1387' => 'twi', 'TWI53G1848' => 'twi', 'TWI74G0493' => 'twi', 'TWI75G1154' => 'twi', 'TWI77G0991' => 'twi', 'unitig_22.g6655' => 'ugi', 'unitig_27.g25052' => 'ugi', 'unitig_699.g19190' => 'ugi', 'unitig_8.g3296' => 'ugi', 'vmacro19417' => 'vma', 'VMungo0720G2390' => 'vmu', 'VMungo1127G0365' => 'vmu', 'VMungo1309G1584' => 'vmu', 'Zm00001eb004170' => 'zma', 'Zm00001eb047170' => 'zma', 'Zm00001eb178950' => 'zma', 'Zm00001eb222570' => 'zma', 'Zm00001eb403110' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'ORTHO05D001255', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D001255' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'ORTHO05D001255', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '446', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false, 'has_blast_db' => true ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'ORTHO05D001255' ) ), 'genes' => array( 'A01p42100' => 'bna', 'A03p01140' => 'bna', 'A03p35810' => 'bna', 'A05p39210' => 'bna', 'A07p21450' => 'bna', 'A09p46200' => 'bna', 'Aa31LG10G8420' => 'aar', 'Aa31LG3G2300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3050' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3060' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1131' => 'aag', 'Actinidia13073' => 'ach', 'Actinidia24129' => 'ach', 'Actinidia28900' => 'ach', 'Ah.08g211660' => 'amhyb', 'Ah.14g085860' => 'amhyb', 'AL3G21070' => 'aly', 'AL5G34110' => 'aly', 'AL6G12670' => 'aly', 'Aqoxy2G01785' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N72S3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S6Q2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87HTU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F2DT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSV57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7JGCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF2L6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R086A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UBK6DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAKG1R' => 'arhy', 'AT3G09840' => 'ath', 'AT3G53230' => 'ath', 'AT5G03340' => 'ath', 'ATR1132G014' => 'atr', 'ATR1152G092' => 'atr', 'Atru.chr3.3556' => 'acertr', 'Atru.chr8.1826' => 'acertr', 'Atru.chr9.2536' => 'acertr', 'AUR62008175' => 'cqu', 'AUR62026909' => 'cqu', 'AUR62038585' => 'cqu', 'AUR62039867' => 'cqu', 'AUR62040576' => 'cqu', 'AUR62042049' => 'cqu', 'BcaB01g05824' => 'bca', 'BcaB01g05845' => 'bca', 'BcaB02g07800' => 'bca', 'BcaB03g11585' => 'bca', 'BcaB04g21241' => 'bca', 'BcaC01g04249' => 'bca', 'BcaC05g29495' => 'bca', 'BcaC05g29706' => 'bca', 'BcaC07g39682' => 'bca', 'BcaC09g48122' => 'bca', 'BcaNung06804' => 'bca', 'BolC1t05429H' => 'bol', 'BolC3t12701H' => 'bol', 'BolC3t16617H' => 'bol', 'BolC5t34480H' => 'bol', 'BolC6t37291H' => 'bol', 'BolC8t50453H' => 'bol', 'BraA01t04278Z' => 'bra', 'BraA03t09495Z' => 'bra', 'BraA03t12753Z' => 'bra', 'BraA05t22710Z' => 'bra', 'BraA07t29832Z' => 'bra', 'BraA09t40084Z' => 'bra', 'C03p01450' => 'bna', 'C03p43460' => 'bna', 'C05p58260' => 'bna', 'C06p21060' => 'bna', 'C08p28450' => 'bna', 'CAN.G1166.32' => 'can', 'CAN.G1169.14' => 'can', 'CAN.G1755.4' => 'can', 'CAN.G309.14' => 'can', 'CAN.G900.46' => 'can', 'CANSAT54G1454' => 'cansat', 'CANSAT80G1774' => 'cansat', 'CARHR163070' => 'chi', 'CARHR272090' => 'chi', 'Carub.0003s0893' => 'cru', 'Carub.0005s1976' => 'cru', 'Carub.0006s0215' => 'cru', 'Ca_01389_v3' => 'car', 'Ca_08858_v3' => 'car', 'Ca_11493_v3' => 'car', 'CBR_g8453' => 'cbr', 'Cc01_g10600' => 'ccan', 'Cc02_g15090' => 'ccan', 'Cc04_g12540' => 'ccan', 'Cc06_g04140' => 'ccan', 'Cc06_g17260' => 'ccan', 'CDE02G3027' => 'cde', 'CDE06G0560' => 'cde', 'CDE06G2269' => 'cde', 'CDE07G1125' => 'cde', 'CDE11G0622' => 'cde', 'Cfa010317' => 'cfa', 'Cfa010348' => 'cfa', 'Cfa017590' => 'cfa', 'Ciclev10011046m.g' => 'ccl', 'Ciclev10013552m.g' => 'ccl', 'Ciclev10018887m.g' => 'ccl', 'Ciclev10024348m.g' => 'ccl', 'Ciclev10027840m.g' => 'ccl', 'CiPaw.09G173400' => 'cil', 'CiPaw.13G118100' => 'cil', 'CiPaw.13G118200' => 'cil', 'ClCG04G009260' => 'cla', 'ClCG06G017170' => 'cla', 'ClCG10G020200' => 'cla', 'COL.COLO4_03885' => 'col', 'COL.COLO4_17360' => 'col', 'COL.COLO4_25876' => 'col', 'COL.COLO4_25881' => 'col', 'COL.COLO4_25891' => 'col', 'COL.COLO4_26975' => 'col', 'COL.COLO4_34704' => 'col', 'Cpa.g.sc153.17' => 'cpa', 'Cpa.g.sc56.23' => 'cpa', 'Cpa.g.sc56.24' => 'cpa', 'Cre06.g269950' => 'cre', 'CsaV3_1G001310' => 'csa', 'CsaV3_3G035900' => 'csa', 'CsaV3_6G039850' => 'csa', 'CSS0008341' => 'camsi', 'CSS0009178' => 'camsi', 'CSS0039212' => 'camsi', 'CSS0041444' => 'camsi', 'DCAR_014993' => 'dca', 'DCAR_016471' => 'dca', 'DCAR_017688' => 'dca', 'DCAR_020824' => 'dca', 'Dinv20622' => 'din', 'Dinv29354' => 'din', 'Dinv34699' => 'din', 'Dinv35778' => 'din', 'Dinv37306' => 'din', 'Duzib093G0198' => 'dzi', 'Duzib106G1759' => 'dzi', 'Duzib128G1076' => 'dzi', 'Duzib150G1429' => 'dzi', 'Duzib170G0362' => 'dzi', 'ECA238G0239' => 'eca', 'ECA248G0147' => 'eca', 'ECA248G2986' => 'eca', 'ECA248G3803' => 'eca', 'EL10Ac7g16618' => 'bvu', 'EL10Ac8g19480' => 'bvu', 'EL10Ac8g19481' => 'bvu', 'Eucgr.B00242' => 'egr', 'Eucgr.K01256' => 'egr', 'Eucgr.K01258' => 'egr', 'FAN02G4387' => 'fan', 'FAN04G0370' => 'fan', 'FAN05G0474' => 'fan', 'FAN08G0313' => 'fan', 'FAN09G0455' => 'fan', 'FAN13G3025' => 'fan', 'FAN14G0014' => 'fan', 'FAN15G2158' => 'fan', 'FAN18G4379' => 'fan', 'FAN20G0838' => 'fan', 'FAN24G1112' => 'fan', 'FAN27G3163' => 'fan', 'FvH4_2g06940' => 'fve', 'FvH4_2g07260' => 'fve', 'FvH4_4g17680' => 'fve', 'FvH4_5g05770' => 'fve', 'FvH4_6g16220' => 'fve', 'Glyma.03G182800' => 'gma', 'Glyma.04G186000' => 'gma', 'Glyma.06G180000' => 'gma', 'Glyma.10G057100' => 'gma', 'Glyma.11G194900' => 'gma', 'Glyma.12G177100' => 'gma', 'Glyma.13G143600' => 'gma', 'Glyma.13G323600' => 'gma', 'Glyma.19G183400' => 'gma', 'Gohir.A01G140607' => 'ghi', 'Gohir.A04G072300' => 'ghi', 'Gohir.A09G147700' => 'ghi', 'Gohir.A11G324100' => 'ghi', 'Gohir.D01G130600' => 'ghi', 'Gohir.D03G137250' => 'ghi', 'Gohir.D04G110800' => 'ghi', 'Gohir.D09G143300' => 'ghi', 'Gohir.D11G343200' => 'ghi', 'Gorai.002G162100' => 'gra', 'Gorai.003G144300' => 'gra', 'Gorai.003G146600' => 'gra', 'Gorai.006G164800' => 'gra', 'Gorai.007G373300' => 'gra', 'Gorai.009G415000' => 'gra', 'GSVIVG01007689001' => 'vvi', 'GSVIVG01025723001' => 'vvi', 'GSVIVG01031517001' => 'vvi', 'HanXRQChr01g0027621' => 'han', 'HanXRQChr11g0346421' => 'han', 'HanXRQChr11g0350361' => 'han', 'HanXRQChr14g0452581' => 'han', 'HanXRQChr14g0454481' => 'han', 'Haze_02481' => 'cav', 'Haze_14469' => 'cav', 'Haze_20559' => 'cav', 'Haze_23756' => 'cav', 'Haze_26362' => 'cav', 'Hma1.2p1_0046F.1_g026800' => 'hma', 'Hma1.2p1_0569F.1_g180270' => 'hma', 'HPP92_022072' => 'vpl', 'HPP92_022586' => 'vpl', 'Hund12087' => 'sun', 'Hund20292' => 'sun', 'Lalb_Chr02g0155911' => 'lal', 'Lalb_Chr02g0156021' => 'lal', 'Lalb_Chr02g0159421' => 'lal', 'Lalb_Chr06g0171681' => 'lal', 'Lalb_Chr06g0175581' => 'lal', 'Lalb_Chr21g0315001' => 'lal', 'Lalb_Chr25g0289011' => 'lal', 'Lj1A194T70' => 'lonja', 'Lj1A194T72' => 'lonja', 'Lj1g0010086' => 'lja', 'Lj1g0015371' => 'lja', 'Lj2A116T69' => 'lonja', 'Lj3C984T7' => 'lonja', 'Lj3g0009007' => 'lja', 'Lj5g0027153' => 'lja', 'Lsat_1_v5_gn_1_52021' => 'lsa', 'Lsat_1_v5_gn_1_52061' => 'lsa', 'Lsat_1_v5_gn_1_63140' => 'lsa', 'Lsat_1_v5_gn_1_63160' => 'lsa', 'Lsat_1_v5_gn_2_106721' => 'lsa', 'Manes.04G015800' => 'mes', 'Manes.06G107800' => 'mes', 'Manes.08G009500' => 'mes', 'Manes.09G067260' => 'mes', 'Manes.11G150300' => 'mes', 'Mapoly0002s0308' => 'mpo', 'Mapoly0029s0002' => 'mpo', 'Mapoly0096s0020' => 'mpo', 'MBI16_g23862_MAGBIO' => 'mbi', 'MBI18_g14000_MAGBIO' => 'mbi', 'MBI18_g20771_MAGBIO' => 'mbi', 'MBI18_g25265_MAGBIO' => 'mbi', 'MCO01G507' => 'mco', 'MCO01G508' => 'mco', 'MCO05G732' => 'mco', 'MD03G1125700' => 'mdo', 'MD04G1094400' => 'mdo', 'MD06G1170300' => 'mdo', 'MD11G1142500' => 'mdo', 'MD12G1114300' => 'mdo', 'MD14G1175800' => 'mdo', 'Medtr1g063380' => 'mtr', 'Medtr2g095210' => 'mtr', 'Medtr2g095320' => 'mtr', 'Medtr7g101870' => 'mtr', 'MELO3C009349.2' => 'cme', 'MELO3C024461.2' => 'cme', 'MELO3C026279.2' => 'cme', 'Migut.D01983' => 'egut', 'Migut.D02258' => 'egut', 'Migut.J00517' => 'egut', 'Migut.N02574' => 'egut', 'MSTRG.17778' => 'ama', 'MSTRG.18685' => 'ama', 'MSTRG.21099' => 'ama', 'MSTRG.26696' => 'ama', 'Nitab4.5_0000063g0050' => 'nta', 'Nitab4.5_0000101g0430' => 'nta', 'Nitab4.5_0000106g0380' => 'nta', 'Nitab4.5_0001284g0010' => 'nta', 'Nitab4.5_0001802g0010' => 'nta', 'Nitab4.5_0002129g0040' => 'nta', 'Nitab4.5_0002286g0010' => 'nta', 'Nitab4.5_0002632g0090' => 'nta', 'Nitab4.5_0002845g0060' => 'nta', 'Nitab4.5_0006452g0040' => 'nta', 'Nitab4.5_0006989g0020' => 'nta', 'Nitab4.5_0011159g0010' => 'nta', 'Nn2g11571' => 'nnu', 'Nn4g22669' => 'nnu', 'Nn8g40578' => 'nnu', 'Oeu013536.1' => 'oeu', 'Oeu014011.1' => 'oeu', 'Oeu016981.1' => 'oeu', 'Oeu056286.1' => 'oeu', 'Os03g0151800' => 'osa', 'Os08g0413000' => 'osa', 'Os10g0442600' => 'osa', 'Peaxi162Scf00088g00061' => 'pax', 'Peaxi162Scf00089g01628' => 'pax', 'Peaxi162Scf00311g00045' => 'pax', 'Peaxi162Scf00389g00949' => 'pax', 'Peaxi162Scf00701g00515' => 'pax', 'Peaxi162Scf01159g00110' => 'pax', 'Peaxi162Scf03841g00002' => 'pax', 'PGR004G0369' => 'pgr', 'PGR083G1830' => 'pgr', 'PGR142G1733' => 'pgr', 'PGR142G2465' => 'pgr', 'PGSC0003DMG400010454' => 'stu', 'PGSC0003DMG400012003' => 'stu', 'PGSC0003DMG400018104' => 'stu', 'PGSC0003DMG400019676' => 'stu', 'PGSC0003DMG400021556' => 'stu', 'Phvul.007G149366' => 'pvu', 'Phvul.007G149432' => 'pvu', 'Phvul.009G175800' => 'pvu', 'Phvul.011G083800' => 'pvu', 'Potri.006G125500' => 'ptr', 'Potri.012G088200' => 'ptr', 'Potri.015G080600' => 'ptr', 'Potri.016G091600' => 'ptr', 'Potri.017G108200' => 'ptr', 'Pp3c13_4290' => 'ppa', 'Pp3c15_10770' => 'ppa', 'Pp3c26_8300' => 'ppa', 'Pp3c3_6980' => 'ppa', 'Pp3c4_26860' => 'ppa', 'Pp3c7_25950' => 'ppa', 'Pp3c9_3020' => 'ppa', 'PRCOL_00000863' => 'pco', 'PRCOL_00004109' => 'pco', 'Prupe.4G237600' => 'ppe', 'Prupe.6G107800' => 'ppe', 'Prupe.6G233700' => 'ppe', 'Psat0s2621g0040' => 'psa', 'Psat5g280600' => 'psa', 'Psat6g073160' => 'psa', 'PSO017G4150' => 'pso', 'PSO063G2537' => 'pso', 'PSO339G3313' => 'pso', 'PSO801G0113' => 'pso', 'PSO832G0543' => 'pso', 'PSO832G1837' => 'pso', 'PSO832G3026' => 'pso', 'QL01p015943' => 'qlo', 'QL01p015951' => 'qlo', 'QL01p015963' => 'qlo', 'QL02p091180' => 'qlo', 'QL05p042048' => 'qlo', 'QL05p052073' => 'qlo', 'QL05p052843' => 'qlo', 'QL07p043685' => 'qlo', 'QL08p000298' => 'qlo', 'QL10p008753' => 'qlo', 'RcHm_v2.0_Chr3g0470061' => 'rch', 'RcHm_v2.0_Chr4g0421621' => 'rch', 'RcHm_v2.0_Chr6g0259281' => 'rch', 'RcHm_v2.0_Chr6g0259871' => 'rch', 'RcHm_v2.0_Chr7g0193051' => 'rch', 'Rhsim08G0175000' => 'rsi', 'Rhsim13G0098600' => 'rsi', 'Rhsim13G0098700' => 'rsi', 'Sabra06G0099100' => 'sbr', 'Sabra12G0063000' => 'sbr', 'Sabra15G0072400' => 'sbr', 'Sabra15G0104700' => 'sbr', 'Sabra16G0097300' => 'sbr', 'SalBow3G0341' => 'sbo', 'SalBow3G0495' => 'sbo', 'SalBow3G1235' => 'sbo', 'SalBow5G2911' => 'sbo', 'SalBow5G5694' => 'sbo', 'Sc02g0001700' => 'sci', 'Sc20g0005410' => 'sci', 'Sc20g0005440' => 'sci', 'Sed0003418' => 'sed', 'Sed0007648' => 'sed', 'Sed0009250' => 'sed', 'Sed0013960' => 'sed', 'Sed0027845' => 'sed', 'SEGI_01673' => 'sgi', 'SEGI_02788' => 'sgi', 'SEGI_07061' => 'sgi', 'SEGI_09723' => 'sgi', 'SEGI_10853' => 'sgi', 'SEGI_20551' => 'sgi', 'SEGI_20763' => 'sgi', 'SEGI_21910' => 'sgi', 'SEGI_25498' => 'sgi', 'SEGI_32518' => 'sgi', 'SEGI_39741' => 'sgi', 'SGA_v2.0_scaffold116G32211' => 'sas', 'SGA_v2.0_scaffold127G34040' => 'sas', 'SGA_v2.0_scaffold40G15504' => 'sas', 'SGA_v2.0_scaffold889G53696' => 'sas', 'SHI12473' => 'shi', 'SMO118G0023' => 'smo', 'SMO169G0030' => 'smo', 'Solyc03g112590.4' => 'sly', 'Solyc06g074980.3' => 'sly', 'Solyc09g008070.4' => 'sly', 'Solyc10g084050.2' => 'sly', 'Solyc11g069720.2' => 'sly', 'Sopen03g031660' => 'spe', 'Sopen06g031380' => 'spe', 'Sopen09g002870' => 'spe', 'Sopen10g033500' => 'spe', 'Sopen11g028560' => 'spe', 'Sp3g08170' => 'spa', 'Sp5g09110' => 'spa', 'Sp6g39400' => 'spa', 'TAR369G0240' => 'tar', 'TAR445G0001' => 'tar', 'TAR622G1132' => 'tar', 'TAR623G1281' => 'tar', 'TAR629G2012' => 'tar', 'TAR633G2764' => 'tar', 'TAR636G1007' => 'tar', 'THA.LOC104816345' => 'tha', 'THA.LOC104823234' => 'tha', 'THA.LOC104823479' => 'tha', 'THA.LOC104826910' => 'tha', 'Thecc.05G064700' => 'tca', 'Thecc.09G347800' => 'tca', 'Thhalv10000577m.g' => 'esa', 'Thhalv10012714m.g' => 'esa', 'Thhalv10020085m.g' => 'esa', 'TPR.G11434' => 'tpr', 'TPR.G11534' => 'tpr', 'TPR.G20216' => 'tpr', 'TPR.G25422' => 'tpr', 'TPR.G9362' => 'tpr', 'TWI09G1387' => 'twi', 'TWI53G1848' => 'twi', 'TWI74G0493' => 'twi', 'TWI75G1154' => 'twi', 'TWI77G0991' => 'twi', 'unitig_22.g6655' => 'ugi', 'unitig_27.g25052' => 'ugi', 'unitig_699.g19190' => 'ugi', 'unitig_8.g3296' => 'ugi', 'vmacro19417' => 'vma', 'VMungo0720G2390' => 'vmu', 'VMungo1127G0365' => 'vmu', 'VMungo1309G1584' => 'vmu', 'Zm00001eb004170' => 'zma', 'Zm00001eb047170' => 'zma', 'Zm00001eb178950' => 'zma', 'Zm00001eb222570' => 'zma', 'Zm00001eb403110' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'ORTHO05D001255' $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D001255' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'ORTHO05D001255' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'ORTHO05D001255' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
<label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?>
<label>Source(s)</label>
<select class='form form-select' name='ontology_source_group' id='ontology_source_group'>
<?php foreach ($source_groups_information['available'] as $source_group_id) : ?>
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D001255', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '446', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false, 'has_blast_db' => true ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A01p42100' => 'bna', 'A03p01140' => 'bna', 'A03p35810' => 'bna', 'A05p39210' => 'bna', 'A07p21450' => 'bna', 'A09p46200' => 'bna', 'Aa31LG10G8420' => 'aar', 'Aa31LG3G2300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3050' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3060' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1131' => 'aag', 'Actinidia13073' => 'ach', 'Actinidia24129' => 'ach', 'Actinidia28900' => 'ach', 'Ah.08g211660' => 'amhyb', 'Ah.14g085860' => 'amhyb', 'AL3G21070' => 'aly', 'AL5G34110' => 'aly', 'AL6G12670' => 'aly', 'Aqoxy2G01785' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N72S3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S6Q2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87HTU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F2DT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSV57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7JGCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF2L6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R086A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UBK6DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAKG1R' => 'arhy', 'AT3G09840' => 'ath', 'AT3G53230' => 'ath', 'AT5G03340' => 'ath', 'ATR1132G014' => 'atr', 'ATR1152G092' => 'atr', 'Atru.chr3.3556' => 'acertr', 'Atru.chr8.1826' => 'acertr', 'Atru.chr9.2536' => 'acertr', 'AUR62008175' => 'cqu', 'AUR62026909' => 'cqu', 'AUR62038585' => 'cqu', 'AUR62039867' => 'cqu', 'AUR62040576' => 'cqu', 'AUR62042049' => 'cqu', 'BcaB01g05824' => 'bca', 'BcaB01g05845' => 'bca', 'BcaB02g07800' => 'bca', 'BcaB03g11585' => 'bca', 'BcaB04g21241' => 'bca', 'BcaC01g04249' => 'bca', 'BcaC05g29495' => 'bca', 'BcaC05g29706' => 'bca', 'BcaC07g39682' => 'bca', 'BcaC09g48122' => 'bca', 'BcaNung06804' => 'bca', 'BolC1t05429H' => 'bol', 'BolC3t12701H' => 'bol', 'BolC3t16617H' => 'bol', 'BolC5t34480H' => 'bol', 'BolC6t37291H' => 'bol', 'BolC8t50453H' => 'bol', 'BraA01t04278Z' => 'bra', 'BraA03t09495Z' => 'bra', 'BraA03t12753Z' => 'bra', 'BraA05t22710Z' => 'bra', 'BraA07t29832Z' => 'bra', 'BraA09t40084Z' => 'bra', 'C03p01450' => 'bna', 'C03p43460' => 'bna', 'C05p58260' => 'bna', 'C06p21060' => 'bna', 'C08p28450' => 'bna', 'CAN.G1166.32' => 'can', 'CAN.G1169.14' => 'can', 'CAN.G1755.4' => 'can', 'CAN.G309.14' => 'can', 'CAN.G900.46' => 'can', 'CANSAT54G1454' => 'cansat', 'CANSAT80G1774' => 'cansat', 'CARHR163070' => 'chi', 'CARHR272090' => 'chi', 'Carub.0003s0893' => 'cru', 'Carub.0005s1976' => 'cru', 'Carub.0006s0215' => 'cru', 'Ca_01389_v3' => 'car', 'Ca_08858_v3' => 'car', 'Ca_11493_v3' => 'car', 'CBR_g8453' => 'cbr', 'Cc01_g10600' => 'ccan', 'Cc02_g15090' => 'ccan', 'Cc04_g12540' => 'ccan', 'Cc06_g04140' => 'ccan', 'Cc06_g17260' => 'ccan', 'CDE02G3027' => 'cde', 'CDE06G0560' => 'cde', 'CDE06G2269' => 'cde', 'CDE07G1125' => 'cde', 'CDE11G0622' => 'cde', 'Cfa010317' => 'cfa', 'Cfa010348' => 'cfa', 'Cfa017590' => 'cfa', 'Ciclev10011046m.g' => 'ccl', 'Ciclev10013552m.g' => 'ccl', 'Ciclev10018887m.g' => 'ccl', 'Ciclev10024348m.g' => 'ccl', 'Ciclev10027840m.g' => 'ccl', 'CiPaw.09G173400' => 'cil', 'CiPaw.13G118100' => 'cil', 'CiPaw.13G118200' => 'cil', 'ClCG04G009260' => 'cla', 'ClCG06G017170' => 'cla', 'ClCG10G020200' => 'cla', 'COL.COLO4_03885' => 'col', 'COL.COLO4_17360' => 'col', 'COL.COLO4_25876' => 'col', 'COL.COLO4_25881' => 'col', 'COL.COLO4_25891' => 'col', 'COL.COLO4_26975' => 'col', 'COL.COLO4_34704' => 'col', 'Cpa.g.sc153.17' => 'cpa', 'Cpa.g.sc56.23' => 'cpa', 'Cpa.g.sc56.24' => 'cpa', 'Cre06.g269950' => 'cre', 'CsaV3_1G001310' => 'csa', 'CsaV3_3G035900' => 'csa', 'CsaV3_6G039850' => 'csa', 'CSS0008341' => 'camsi', 'CSS0009178' => 'camsi', 'CSS0039212' => 'camsi', 'CSS0041444' => 'camsi', 'DCAR_014993' => 'dca', 'DCAR_016471' => 'dca', 'DCAR_017688' => 'dca', 'DCAR_020824' => 'dca', 'Dinv20622' => 'din', 'Dinv29354' => 'din', 'Dinv34699' => 'din', 'Dinv35778' => 'din', 'Dinv37306' => 'din', 'Duzib093G0198' => 'dzi', 'Duzib106G1759' => 'dzi', 'Duzib128G1076' => 'dzi', 'Duzib150G1429' => 'dzi', 'Duzib170G0362' => 'dzi', 'ECA238G0239' => 'eca', 'ECA248G0147' => 'eca', 'ECA248G2986' => 'eca', 'ECA248G3803' => 'eca', 'EL10Ac7g16618' => 'bvu', 'EL10Ac8g19480' => 'bvu', 'EL10Ac8g19481' => 'bvu', 'Eucgr.B00242' => 'egr', 'Eucgr.K01256' => 'egr', 'Eucgr.K01258' => 'egr', 'FAN02G4387' => 'fan', 'FAN04G0370' => 'fan', 'FAN05G0474' => 'fan', 'FAN08G0313' => 'fan', 'FAN09G0455' => 'fan', 'FAN13G3025' => 'fan', 'FAN14G0014' => 'fan', 'FAN15G2158' => 'fan', 'FAN18G4379' => 'fan', 'FAN20G0838' => 'fan', 'FAN24G1112' => 'fan', 'FAN27G3163' => 'fan', 'FvH4_2g06940' => 'fve', 'FvH4_2g07260' => 'fve', 'FvH4_4g17680' => 'fve', 'FvH4_5g05770' => 'fve', 'FvH4_6g16220' => 'fve', 'Glyma.03G182800' => 'gma', 'Glyma.04G186000' => 'gma', 'Glyma.06G180000' => 'gma', 'Glyma.10G057100' => 'gma', 'Glyma.11G194900' => 'gma', 'Glyma.12G177100' => 'gma', 'Glyma.13G143600' => 'gma', 'Glyma.13G323600' => 'gma', 'Glyma.19G183400' => 'gma', 'Gohir.A01G140607' => 'ghi', 'Gohir.A04G072300' => 'ghi', 'Gohir.A09G147700' => 'ghi', 'Gohir.A11G324100' => 'ghi', 'Gohir.D01G130600' => 'ghi', 'Gohir.D03G137250' => 'ghi', 'Gohir.D04G110800' => 'ghi', 'Gohir.D09G143300' => 'ghi', 'Gohir.D11G343200' => 'ghi', 'Gorai.002G162100' => 'gra', 'Gorai.003G144300' => 'gra', 'Gorai.003G146600' => 'gra', 'Gorai.006G164800' => 'gra', 'Gorai.007G373300' => 'gra', 'Gorai.009G415000' => 'gra', 'GSVIVG01007689001' => 'vvi', 'GSVIVG01025723001' => 'vvi', 'GSVIVG01031517001' => 'vvi', 'HanXRQChr01g0027621' => 'han', 'HanXRQChr11g0346421' => 'han', 'HanXRQChr11g0350361' => 'han', 'HanXRQChr14g0452581' => 'han', 'HanXRQChr14g0454481' => 'han', 'Haze_02481' => 'cav', 'Haze_14469' => 'cav', 'Haze_20559' => 'cav', 'Haze_23756' => 'cav', 'Haze_26362' => 'cav', 'Hma1.2p1_0046F.1_g026800' => 'hma', 'Hma1.2p1_0569F.1_g180270' => 'hma', 'HPP92_022072' => 'vpl', 'HPP92_022586' => 'vpl', 'Hund12087' => 'sun', 'Hund20292' => 'sun', 'Lalb_Chr02g0155911' => 'lal', 'Lalb_Chr02g0156021' => 'lal', 'Lalb_Chr02g0159421' => 'lal', 'Lalb_Chr06g0171681' => 'lal', 'Lalb_Chr06g0175581' => 'lal', 'Lalb_Chr21g0315001' => 'lal', 'Lalb_Chr25g0289011' => 'lal', 'Lj1A194T70' => 'lonja', 'Lj1A194T72' => 'lonja', 'Lj1g0010086' => 'lja', 'Lj1g0015371' => 'lja', 'Lj2A116T69' => 'lonja', 'Lj3C984T7' => 'lonja', 'Lj3g0009007' => 'lja', 'Lj5g0027153' => 'lja', 'Lsat_1_v5_gn_1_52021' => 'lsa', 'Lsat_1_v5_gn_1_52061' => 'lsa', 'Lsat_1_v5_gn_1_63140' => 'lsa', 'Lsat_1_v5_gn_1_63160' => 'lsa', 'Lsat_1_v5_gn_2_106721' => 'lsa', 'Manes.04G015800' => 'mes', 'Manes.06G107800' => 'mes', 'Manes.08G009500' => 'mes', 'Manes.09G067260' => 'mes', 'Manes.11G150300' => 'mes', 'Mapoly0002s0308' => 'mpo', 'Mapoly0029s0002' => 'mpo', 'Mapoly0096s0020' => 'mpo', 'MBI16_g23862_MAGBIO' => 'mbi', 'MBI18_g14000_MAGBIO' => 'mbi', 'MBI18_g20771_MAGBIO' => 'mbi', 'MBI18_g25265_MAGBIO' => 'mbi', 'MCO01G507' => 'mco', 'MCO01G508' => 'mco', 'MCO05G732' => 'mco', 'MD03G1125700' => 'mdo', 'MD04G1094400' => 'mdo', 'MD06G1170300' => 'mdo', 'MD11G1142500' => 'mdo', 'MD12G1114300' => 'mdo', 'MD14G1175800' => 'mdo', 'Medtr1g063380' => 'mtr', 'Medtr2g095210' => 'mtr', 'Medtr2g095320' => 'mtr', 'Medtr7g101870' => 'mtr', 'MELO3C009349.2' => 'cme', 'MELO3C024461.2' => 'cme', 'MELO3C026279.2' => 'cme', 'Migut.D01983' => 'egut', 'Migut.D02258' => 'egut', 'Migut.J00517' => 'egut', 'Migut.N02574' => 'egut', 'MSTRG.17778' => 'ama', 'MSTRG.18685' => 'ama', 'MSTRG.21099' => 'ama', 'MSTRG.26696' => 'ama', 'Nitab4.5_0000063g0050' => 'nta', 'Nitab4.5_0000101g0430' => 'nta', 'Nitab4.5_0000106g0380' => 'nta', 'Nitab4.5_0001284g0010' => 'nta', 'Nitab4.5_0001802g0010' => 'nta', 'Nitab4.5_0002129g0040' => 'nta', 'Nitab4.5_0002286g0010' => 'nta', 'Nitab4.5_0002632g0090' => 'nta', 'Nitab4.5_0002845g0060' => 'nta', 'Nitab4.5_0006452g0040' => 'nta', 'Nitab4.5_0006989g0020' => 'nta', 'Nitab4.5_0011159g0010' => 'nta', 'Nn2g11571' => 'nnu', 'Nn4g22669' => 'nnu', 'Nn8g40578' => 'nnu', 'Oeu013536.1' => 'oeu', 'Oeu014011.1' => 'oeu', 'Oeu016981.1' => 'oeu', 'Oeu056286.1' => 'oeu', 'Os03g0151800' => 'osa', 'Os08g0413000' => 'osa', 'Os10g0442600' => 'osa', 'Peaxi162Scf00088g00061' => 'pax', 'Peaxi162Scf00089g01628' => 'pax', 'Peaxi162Scf00311g00045' => 'pax', 'Peaxi162Scf00389g00949' => 'pax', 'Peaxi162Scf00701g00515' => 'pax', 'Peaxi162Scf01159g00110' => 'pax', 'Peaxi162Scf03841g00002' => 'pax', 'PGR004G0369' => 'pgr', 'PGR083G1830' => 'pgr', 'PGR142G1733' => 'pgr', 'PGR142G2465' => 'pgr', 'PGSC0003DMG400010454' => 'stu', 'PGSC0003DMG400012003' => 'stu', 'PGSC0003DMG400018104' => 'stu', 'PGSC0003DMG400019676' => 'stu', 'PGSC0003DMG400021556' => 'stu', 'Phvul.007G149366' => 'pvu', 'Phvul.007G149432' => 'pvu', 'Phvul.009G175800' => 'pvu', 'Phvul.011G083800' => 'pvu', 'Potri.006G125500' => 'ptr', 'Potri.012G088200' => 'ptr', 'Potri.015G080600' => 'ptr', 'Potri.016G091600' => 'ptr', 'Potri.017G108200' => 'ptr', 'Pp3c13_4290' => 'ppa', 'Pp3c15_10770' => 'ppa', 'Pp3c26_8300' => 'ppa', 'Pp3c3_6980' => 'ppa', 'Pp3c4_26860' => 'ppa', 'Pp3c7_25950' => 'ppa', 'Pp3c9_3020' => 'ppa', 'PRCOL_00000863' => 'pco', 'PRCOL_00004109' => 'pco', 'Prupe.4G237600' => 'ppe', 'Prupe.6G107800' => 'ppe', 'Prupe.6G233700' => 'ppe', 'Psat0s2621g0040' => 'psa', 'Psat5g280600' => 'psa', 'Psat6g073160' => 'psa', 'PSO017G4150' => 'pso', 'PSO063G2537' => 'pso', 'PSO339G3313' => 'pso', 'PSO801G0113' => 'pso', 'PSO832G0543' => 'pso', 'PSO832G1837' => 'pso', 'PSO832G3026' => 'pso', 'QL01p015943' => 'qlo', 'QL01p015951' => 'qlo', 'QL01p015963' => 'qlo', 'QL02p091180' => 'qlo', 'QL05p042048' => 'qlo', 'QL05p052073' => 'qlo', 'QL05p052843' => 'qlo', 'QL07p043685' => 'qlo', 'QL08p000298' => 'qlo', 'QL10p008753' => 'qlo', 'RcHm_v2.0_Chr3g0470061' => 'rch', 'RcHm_v2.0_Chr4g0421621' => 'rch', 'RcHm_v2.0_Chr6g0259281' => 'rch', 'RcHm_v2.0_Chr6g0259871' => 'rch', 'RcHm_v2.0_Chr7g0193051' => 'rch', 'Rhsim08G0175000' => 'rsi', 'Rhsim13G0098600' => 'rsi', 'Rhsim13G0098700' => 'rsi', 'Sabra06G0099100' => 'sbr', 'Sabra12G0063000' => 'sbr', 'Sabra15G0072400' => 'sbr', 'Sabra15G0104700' => 'sbr', 'Sabra16G0097300' => 'sbr', 'SalBow3G0341' => 'sbo', 'SalBow3G0495' => 'sbo', 'SalBow3G1235' => 'sbo', 'SalBow5G2911' => 'sbo', 'SalBow5G5694' => 'sbo', 'Sc02g0001700' => 'sci', 'Sc20g0005410' => 'sci', 'Sc20g0005440' => 'sci', 'Sed0003418' => 'sed', 'Sed0007648' => 'sed', 'Sed0009250' => 'sed', 'Sed0013960' => 'sed', 'Sed0027845' => 'sed', 'SEGI_01673' => 'sgi', 'SEGI_02788' => 'sgi', 'SEGI_07061' => 'sgi', 'SEGI_09723' => 'sgi', 'SEGI_10853' => 'sgi', 'SEGI_20551' => 'sgi', 'SEGI_20763' => 'sgi', 'SEGI_21910' => 'sgi', 'SEGI_25498' => 'sgi', 'SEGI_32518' => 'sgi', 'SEGI_39741' => 'sgi', 'SGA_v2.0_scaffold116G32211' => 'sas', 'SGA_v2.0_scaffold127G34040' => 'sas', 'SGA_v2.0_scaffold40G15504' => 'sas', 'SGA_v2.0_scaffold889G53696' => 'sas', 'SHI12473' => 'shi', 'SMO118G0023' => 'smo', 'SMO169G0030' => 'smo', 'Solyc03g112590.4' => 'sly', 'Solyc06g074980.3' => 'sly', 'Solyc09g008070.4' => 'sly', 'Solyc10g084050.2' => 'sly', 'Solyc11g069720.2' => 'sly', 'Sopen03g031660' => 'spe', 'Sopen06g031380' => 'spe', 'Sopen09g002870' => 'spe', 'Sopen10g033500' => 'spe', 'Sopen11g028560' => 'spe', 'Sp3g08170' => 'spa', 'Sp5g09110' => 'spa', 'Sp6g39400' => 'spa', 'TAR369G0240' => 'tar', 'TAR445G0001' => 'tar', 'TAR622G1132' => 'tar', 'TAR623G1281' => 'tar', 'TAR629G2012' => 'tar', 'TAR633G2764' => 'tar', 'TAR636G1007' => 'tar', 'THA.LOC104816345' => 'tha', 'THA.LOC104823234' => 'tha', 'THA.LOC104823479' => 'tha', 'THA.LOC104826910' => 'tha', 'Thecc.05G064700' => 'tca', 'Thecc.09G347800' => 'tca', 'Thhalv10000577m.g' => 'esa', 'Thhalv10012714m.g' => 'esa', 'Thhalv10020085m.g' => 'esa', 'TPR.G11434' => 'tpr', 'TPR.G11534' => 'tpr', 'TPR.G20216' => 'tpr', 'TPR.G25422' => 'tpr', 'TPR.G9362' => 'tpr', 'TWI09G1387' => 'twi', 'TWI53G1848' => 'twi', 'TWI74G0493' => 'twi', 'TWI75G1154' => 'twi', 'TWI77G0991' => 'twi', 'unitig_22.g6655' => 'ugi', 'unitig_27.g25052' => 'ugi', 'unitig_699.g19190' => 'ugi', 'unitig_8.g3296' => 'ugi', 'vmacro19417' => 'vma', 'VMungo0720G2390' => 'vmu', 'VMungo1127G0365' => 'vmu', 'VMungo1309G1584' => 'vmu', 'Zm00001eb004170' => 'zma', 'Zm00001eb047170' => 'zma', 'Zm00001eb178950' => 'zma', 'Zm00001eb222570' => 'zma', 'Zm00001eb403110' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'ORTHO05D001255', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D001255' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'ORTHO05D001255', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '446', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false, 'has_blast_db' => true ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'ORTHO05D001255' ) ), 'genes' => array( 'A01p42100' => 'bna', 'A03p01140' => 'bna', 'A03p35810' => 'bna', 'A05p39210' => 'bna', 'A07p21450' => 'bna', 'A09p46200' => 'bna', 'Aa31LG10G8420' => 'aar', 'Aa31LG3G2300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3050' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3060' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1131' => 'aag', 'Actinidia13073' => 'ach', 'Actinidia24129' => 'ach', 'Actinidia28900' => 'ach', 'Ah.08g211660' => 'amhyb', 'Ah.14g085860' => 'amhyb', 'AL3G21070' => 'aly', 'AL5G34110' => 'aly', 'AL6G12670' => 'aly', 'Aqoxy2G01785' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N72S3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S6Q2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87HTU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F2DT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSV57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7JGCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF2L6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R086A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UBK6DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAKG1R' => 'arhy', 'AT3G09840' => 'ath', 'AT3G53230' => 'ath', 'AT5G03340' => 'ath', 'ATR1132G014' => 'atr', 'ATR1152G092' => 'atr', 'Atru.chr3.3556' => 'acertr', 'Atru.chr8.1826' => 'acertr', 'Atru.chr9.2536' => 'acertr', 'AUR62008175' => 'cqu', 'AUR62026909' => 'cqu', 'AUR62038585' => 'cqu', 'AUR62039867' => 'cqu', 'AUR62040576' => 'cqu', 'AUR62042049' => 'cqu', 'BcaB01g05824' => 'bca', 'BcaB01g05845' => 'bca', 'BcaB02g07800' => 'bca', 'BcaB03g11585' => 'bca', 'BcaB04g21241' => 'bca', 'BcaC01g04249' => 'bca', 'BcaC05g29495' => 'bca', 'BcaC05g29706' => 'bca', 'BcaC07g39682' => 'bca', 'BcaC09g48122' => 'bca', 'BcaNung06804' => 'bca', 'BolC1t05429H' => 'bol', 'BolC3t12701H' => 'bol', 'BolC3t16617H' => 'bol', 'BolC5t34480H' => 'bol', 'BolC6t37291H' => 'bol', 'BolC8t50453H' => 'bol', 'BraA01t04278Z' => 'bra', 'BraA03t09495Z' => 'bra', 'BraA03t12753Z' => 'bra', 'BraA05t22710Z' => 'bra', 'BraA07t29832Z' => 'bra', 'BraA09t40084Z' => 'bra', 'C03p01450' => 'bna', 'C03p43460' => 'bna', 'C05p58260' => 'bna', 'C06p21060' => 'bna', 'C08p28450' => 'bna', 'CAN.G1166.32' => 'can', 'CAN.G1169.14' => 'can', 'CAN.G1755.4' => 'can', 'CAN.G309.14' => 'can', 'CAN.G900.46' => 'can', 'CANSAT54G1454' => 'cansat', 'CANSAT80G1774' => 'cansat', 'CARHR163070' => 'chi', 'CARHR272090' => 'chi', 'Carub.0003s0893' => 'cru', 'Carub.0005s1976' => 'cru', 'Carub.0006s0215' => 'cru', 'Ca_01389_v3' => 'car', 'Ca_08858_v3' => 'car', 'Ca_11493_v3' => 'car', 'CBR_g8453' => 'cbr', 'Cc01_g10600' => 'ccan', 'Cc02_g15090' => 'ccan', 'Cc04_g12540' => 'ccan', 'Cc06_g04140' => 'ccan', 'Cc06_g17260' => 'ccan', 'CDE02G3027' => 'cde', 'CDE06G0560' => 'cde', 'CDE06G2269' => 'cde', 'CDE07G1125' => 'cde', 'CDE11G0622' => 'cde', 'Cfa010317' => 'cfa', 'Cfa010348' => 'cfa', 'Cfa017590' => 'cfa', 'Ciclev10011046m.g' => 'ccl', 'Ciclev10013552m.g' => 'ccl', 'Ciclev10018887m.g' => 'ccl', 'Ciclev10024348m.g' => 'ccl', 'Ciclev10027840m.g' => 'ccl', 'CiPaw.09G173400' => 'cil', 'CiPaw.13G118100' => 'cil', 'CiPaw.13G118200' => 'cil', 'ClCG04G009260' => 'cla', 'ClCG06G017170' => 'cla', 'ClCG10G020200' => 'cla', 'COL.COLO4_03885' => 'col', 'COL.COLO4_17360' => 'col', 'COL.COLO4_25876' => 'col', 'COL.COLO4_25881' => 'col', 'COL.COLO4_25891' => 'col', 'COL.COLO4_26975' => 'col', 'COL.COLO4_34704' => 'col', 'Cpa.g.sc153.17' => 'cpa', 'Cpa.g.sc56.23' => 'cpa', 'Cpa.g.sc56.24' => 'cpa', 'Cre06.g269950' => 'cre', 'CsaV3_1G001310' => 'csa', 'CsaV3_3G035900' => 'csa', 'CsaV3_6G039850' => 'csa', 'CSS0008341' => 'camsi', 'CSS0009178' => 'camsi', 'CSS0039212' => 'camsi', 'CSS0041444' => 'camsi', 'DCAR_014993' => 'dca', 'DCAR_016471' => 'dca', 'DCAR_017688' => 'dca', 'DCAR_020824' => 'dca', 'Dinv20622' => 'din', 'Dinv29354' => 'din', 'Dinv34699' => 'din', 'Dinv35778' => 'din', 'Dinv37306' => 'din', 'Duzib093G0198' => 'dzi', 'Duzib106G1759' => 'dzi', 'Duzib128G1076' => 'dzi', 'Duzib150G1429' => 'dzi', 'Duzib170G0362' => 'dzi', 'ECA238G0239' => 'eca', 'ECA248G0147' => 'eca', 'ECA248G2986' => 'eca', 'ECA248G3803' => 'eca', 'EL10Ac7g16618' => 'bvu', 'EL10Ac8g19480' => 'bvu', 'EL10Ac8g19481' => 'bvu', 'Eucgr.B00242' => 'egr', 'Eucgr.K01256' => 'egr', 'Eucgr.K01258' => 'egr', 'FAN02G4387' => 'fan', 'FAN04G0370' => 'fan', 'FAN05G0474' => 'fan', 'FAN08G0313' => 'fan', 'FAN09G0455' => 'fan', 'FAN13G3025' => 'fan', 'FAN14G0014' => 'fan', 'FAN15G2158' => 'fan', 'FAN18G4379' => 'fan', 'FAN20G0838' => 'fan', 'FAN24G1112' => 'fan', 'FAN27G3163' => 'fan', 'FvH4_2g06940' => 'fve', 'FvH4_2g07260' => 'fve', 'FvH4_4g17680' => 'fve', 'FvH4_5g05770' => 'fve', 'FvH4_6g16220' => 'fve', 'Glyma.03G182800' => 'gma', 'Glyma.04G186000' => 'gma', 'Glyma.06G180000' => 'gma', 'Glyma.10G057100' => 'gma', 'Glyma.11G194900' => 'gma', 'Glyma.12G177100' => 'gma', 'Glyma.13G143600' => 'gma', 'Glyma.13G323600' => 'gma', 'Glyma.19G183400' => 'gma', 'Gohir.A01G140607' => 'ghi', 'Gohir.A04G072300' => 'ghi', 'Gohir.A09G147700' => 'ghi', 'Gohir.A11G324100' => 'ghi', 'Gohir.D01G130600' => 'ghi', 'Gohir.D03G137250' => 'ghi', 'Gohir.D04G110800' => 'ghi', 'Gohir.D09G143300' => 'ghi', 'Gohir.D11G343200' => 'ghi', 'Gorai.002G162100' => 'gra', 'Gorai.003G144300' => 'gra', 'Gorai.003G146600' => 'gra', 'Gorai.006G164800' => 'gra', 'Gorai.007G373300' => 'gra', 'Gorai.009G415000' => 'gra', 'GSVIVG01007689001' => 'vvi', 'GSVIVG01025723001' => 'vvi', 'GSVIVG01031517001' => 'vvi', 'HanXRQChr01g0027621' => 'han', 'HanXRQChr11g0346421' => 'han', 'HanXRQChr11g0350361' => 'han', 'HanXRQChr14g0452581' => 'han', 'HanXRQChr14g0454481' => 'han', 'Haze_02481' => 'cav', 'Haze_14469' => 'cav', 'Haze_20559' => 'cav', 'Haze_23756' => 'cav', 'Haze_26362' => 'cav', 'Hma1.2p1_0046F.1_g026800' => 'hma', 'Hma1.2p1_0569F.1_g180270' => 'hma', 'HPP92_022072' => 'vpl', 'HPP92_022586' => 'vpl', 'Hund12087' => 'sun', 'Hund20292' => 'sun', 'Lalb_Chr02g0155911' => 'lal', 'Lalb_Chr02g0156021' => 'lal', 'Lalb_Chr02g0159421' => 'lal', 'Lalb_Chr06g0171681' => 'lal', 'Lalb_Chr06g0175581' => 'lal', 'Lalb_Chr21g0315001' => 'lal', 'Lalb_Chr25g0289011' => 'lal', 'Lj1A194T70' => 'lonja', 'Lj1A194T72' => 'lonja', 'Lj1g0010086' => 'lja', 'Lj1g0015371' => 'lja', 'Lj2A116T69' => 'lonja', 'Lj3C984T7' => 'lonja', 'Lj3g0009007' => 'lja', 'Lj5g0027153' => 'lja', 'Lsat_1_v5_gn_1_52021' => 'lsa', 'Lsat_1_v5_gn_1_52061' => 'lsa', 'Lsat_1_v5_gn_1_63140' => 'lsa', 'Lsat_1_v5_gn_1_63160' => 'lsa', 'Lsat_1_v5_gn_2_106721' => 'lsa', 'Manes.04G015800' => 'mes', 'Manes.06G107800' => 'mes', 'Manes.08G009500' => 'mes', 'Manes.09G067260' => 'mes', 'Manes.11G150300' => 'mes', 'Mapoly0002s0308' => 'mpo', 'Mapoly0029s0002' => 'mpo', 'Mapoly0096s0020' => 'mpo', 'MBI16_g23862_MAGBIO' => 'mbi', 'MBI18_g14000_MAGBIO' => 'mbi', 'MBI18_g20771_MAGBIO' => 'mbi', 'MBI18_g25265_MAGBIO' => 'mbi', 'MCO01G507' => 'mco', 'MCO01G508' => 'mco', 'MCO05G732' => 'mco', 'MD03G1125700' => 'mdo', 'MD04G1094400' => 'mdo', 'MD06G1170300' => 'mdo', 'MD11G1142500' => 'mdo', 'MD12G1114300' => 'mdo', 'MD14G1175800' => 'mdo', 'Medtr1g063380' => 'mtr', 'Medtr2g095210' => 'mtr', 'Medtr2g095320' => 'mtr', 'Medtr7g101870' => 'mtr', 'MELO3C009349.2' => 'cme', 'MELO3C024461.2' => 'cme', 'MELO3C026279.2' => 'cme', 'Migut.D01983' => 'egut', 'Migut.D02258' => 'egut', 'Migut.J00517' => 'egut', 'Migut.N02574' => 'egut', 'MSTRG.17778' => 'ama', 'MSTRG.18685' => 'ama', 'MSTRG.21099' => 'ama', 'MSTRG.26696' => 'ama', 'Nitab4.5_0000063g0050' => 'nta', 'Nitab4.5_0000101g0430' => 'nta', 'Nitab4.5_0000106g0380' => 'nta', 'Nitab4.5_0001284g0010' => 'nta', 'Nitab4.5_0001802g0010' => 'nta', 'Nitab4.5_0002129g0040' => 'nta', 'Nitab4.5_0002286g0010' => 'nta', 'Nitab4.5_0002632g0090' => 'nta', 'Nitab4.5_0002845g0060' => 'nta', 'Nitab4.5_0006452g0040' => 'nta', 'Nitab4.5_0006989g0020' => 'nta', 'Nitab4.5_0011159g0010' => 'nta', 'Nn2g11571' => 'nnu', 'Nn4g22669' => 'nnu', 'Nn8g40578' => 'nnu', 'Oeu013536.1' => 'oeu', 'Oeu014011.1' => 'oeu', 'Oeu016981.1' => 'oeu', 'Oeu056286.1' => 'oeu', 'Os03g0151800' => 'osa', 'Os08g0413000' => 'osa', 'Os10g0442600' => 'osa', 'Peaxi162Scf00088g00061' => 'pax', 'Peaxi162Scf00089g01628' => 'pax', 'Peaxi162Scf00311g00045' => 'pax', 'Peaxi162Scf00389g00949' => 'pax', 'Peaxi162Scf00701g00515' => 'pax', 'Peaxi162Scf01159g00110' => 'pax', 'Peaxi162Scf03841g00002' => 'pax', 'PGR004G0369' => 'pgr', 'PGR083G1830' => 'pgr', 'PGR142G1733' => 'pgr', 'PGR142G2465' => 'pgr', 'PGSC0003DMG400010454' => 'stu', 'PGSC0003DMG400012003' => 'stu', 'PGSC0003DMG400018104' => 'stu', 'PGSC0003DMG400019676' => 'stu', 'PGSC0003DMG400021556' => 'stu', 'Phvul.007G149366' => 'pvu', 'Phvul.007G149432' => 'pvu', 'Phvul.009G175800' => 'pvu', 'Phvul.011G083800' => 'pvu', 'Potri.006G125500' => 'ptr', 'Potri.012G088200' => 'ptr', 'Potri.015G080600' => 'ptr', 'Potri.016G091600' => 'ptr', 'Potri.017G108200' => 'ptr', 'Pp3c13_4290' => 'ppa', 'Pp3c15_10770' => 'ppa', 'Pp3c26_8300' => 'ppa', 'Pp3c3_6980' => 'ppa', 'Pp3c4_26860' => 'ppa', 'Pp3c7_25950' => 'ppa', 'Pp3c9_3020' => 'ppa', 'PRCOL_00000863' => 'pco', 'PRCOL_00004109' => 'pco', 'Prupe.4G237600' => 'ppe', 'Prupe.6G107800' => 'ppe', 'Prupe.6G233700' => 'ppe', 'Psat0s2621g0040' => 'psa', 'Psat5g280600' => 'psa', 'Psat6g073160' => 'psa', 'PSO017G4150' => 'pso', 'PSO063G2537' => 'pso', 'PSO339G3313' => 'pso', 'PSO801G0113' => 'pso', 'PSO832G0543' => 'pso', 'PSO832G1837' => 'pso', 'PSO832G3026' => 'pso', 'QL01p015943' => 'qlo', 'QL01p015951' => 'qlo', 'QL01p015963' => 'qlo', 'QL02p091180' => 'qlo', 'QL05p042048' => 'qlo', 'QL05p052073' => 'qlo', 'QL05p052843' => 'qlo', 'QL07p043685' => 'qlo', 'QL08p000298' => 'qlo', 'QL10p008753' => 'qlo', 'RcHm_v2.0_Chr3g0470061' => 'rch', 'RcHm_v2.0_Chr4g0421621' => 'rch', 'RcHm_v2.0_Chr6g0259281' => 'rch', 'RcHm_v2.0_Chr6g0259871' => 'rch', 'RcHm_v2.0_Chr7g0193051' => 'rch', 'Rhsim08G0175000' => 'rsi', 'Rhsim13G0098600' => 'rsi', 'Rhsim13G0098700' => 'rsi', 'Sabra06G0099100' => 'sbr', 'Sabra12G0063000' => 'sbr', 'Sabra15G0072400' => 'sbr', 'Sabra15G0104700' => 'sbr', 'Sabra16G0097300' => 'sbr', 'SalBow3G0341' => 'sbo', 'SalBow3G0495' => 'sbo', 'SalBow3G1235' => 'sbo', 'SalBow5G2911' => 'sbo', 'SalBow5G5694' => 'sbo', 'Sc02g0001700' => 'sci', 'Sc20g0005410' => 'sci', 'Sc20g0005440' => 'sci', 'Sed0003418' => 'sed', 'Sed0007648' => 'sed', 'Sed0009250' => 'sed', 'Sed0013960' => 'sed', 'Sed0027845' => 'sed', 'SEGI_01673' => 'sgi', 'SEGI_02788' => 'sgi', 'SEGI_07061' => 'sgi', 'SEGI_09723' => 'sgi', 'SEGI_10853' => 'sgi', 'SEGI_20551' => 'sgi', 'SEGI_20763' => 'sgi', 'SEGI_21910' => 'sgi', 'SEGI_25498' => 'sgi', 'SEGI_32518' => 'sgi', 'SEGI_39741' => 'sgi', 'SGA_v2.0_scaffold116G32211' => 'sas', 'SGA_v2.0_scaffold127G34040' => 'sas', 'SGA_v2.0_scaffold40G15504' => 'sas', 'SGA_v2.0_scaffold889G53696' => 'sas', 'SHI12473' => 'shi', 'SMO118G0023' => 'smo', 'SMO169G0030' => 'smo', 'Solyc03g112590.4' => 'sly', 'Solyc06g074980.3' => 'sly', 'Solyc09g008070.4' => 'sly', 'Solyc10g084050.2' => 'sly', 'Solyc11g069720.2' => 'sly', 'Sopen03g031660' => 'spe', 'Sopen06g031380' => 'spe', 'Sopen09g002870' => 'spe', 'Sopen10g033500' => 'spe', 'Sopen11g028560' => 'spe', 'Sp3g08170' => 'spa', 'Sp5g09110' => 'spa', 'Sp6g39400' => 'spa', 'TAR369G0240' => 'tar', 'TAR445G0001' => 'tar', 'TAR622G1132' => 'tar', 'TAR623G1281' => 'tar', 'TAR629G2012' => 'tar', 'TAR633G2764' => 'tar', 'TAR636G1007' => 'tar', 'THA.LOC104816345' => 'tha', 'THA.LOC104823234' => 'tha', 'THA.LOC104823479' => 'tha', 'THA.LOC104826910' => 'tha', 'Thecc.05G064700' => 'tca', 'Thecc.09G347800' => 'tca', 'Thhalv10000577m.g' => 'esa', 'Thhalv10012714m.g' => 'esa', 'Thhalv10020085m.g' => 'esa', 'TPR.G11434' => 'tpr', 'TPR.G11534' => 'tpr', 'TPR.G20216' => 'tpr', 'TPR.G25422' => 'tpr', 'TPR.G9362' => 'tpr', 'TWI09G1387' => 'twi', 'TWI53G1848' => 'twi', 'TWI74G0493' => 'twi', 'TWI75G1154' => 'twi', 'TWI77G0991' => 'twi', 'unitig_22.g6655' => 'ugi', 'unitig_27.g25052' => 'ugi', 'unitig_699.g19190' => 'ugi', 'unitig_8.g3296' => 'ugi', 'vmacro19417' => 'vma', 'VMungo0720G2390' => 'vmu', 'VMungo1127G0365' => 'vmu', 'VMungo1309G1584' => 'vmu', 'Zm00001eb004170' => 'zma', 'Zm00001eb047170' => 'zma', 'Zm00001eb178950' => 'zma', 'Zm00001eb222570' => 'zma', 'Zm00001eb403110' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'ORTHO05D001255' $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D001255' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'ORTHO05D001255' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'ORTHO05D001255' )
include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
Notice (8): Trying to access array offset on value of type null [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D001255', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '446', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false, 'has_blast_db' => true ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A01p42100' => 'bna', 'A03p01140' => 'bna', 'A03p35810' => 'bna', 'A05p39210' => 'bna', 'A07p21450' => 'bna', 'A09p46200' => 'bna', 'Aa31LG10G8420' => 'aar', 'Aa31LG3G2300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3050' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3060' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1131' => 'aag', 'Actinidia13073' => 'ach', 'Actinidia24129' => 'ach', 'Actinidia28900' => 'ach', 'Ah.08g211660' => 'amhyb', 'Ah.14g085860' => 'amhyb', 'AL3G21070' => 'aly', 'AL5G34110' => 'aly', 'AL6G12670' => 'aly', 'Aqoxy2G01785' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N72S3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S6Q2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87HTU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F2DT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSV57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7JGCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF2L6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R086A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UBK6DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAKG1R' => 'arhy', 'AT3G09840' => 'ath', 'AT3G53230' => 'ath', 'AT5G03340' => 'ath', 'ATR1132G014' => 'atr', 'ATR1152G092' => 'atr', 'Atru.chr3.3556' => 'acertr', 'Atru.chr8.1826' => 'acertr', 'Atru.chr9.2536' => 'acertr', 'AUR62008175' => 'cqu', 'AUR62026909' => 'cqu', 'AUR62038585' => 'cqu', 'AUR62039867' => 'cqu', 'AUR62040576' => 'cqu', 'AUR62042049' => 'cqu', 'BcaB01g05824' => 'bca', 'BcaB01g05845' => 'bca', 'BcaB02g07800' => 'bca', 'BcaB03g11585' => 'bca', 'BcaB04g21241' => 'bca', 'BcaC01g04249' => 'bca', 'BcaC05g29495' => 'bca', 'BcaC05g29706' => 'bca', 'BcaC07g39682' => 'bca', 'BcaC09g48122' => 'bca', 'BcaNung06804' => 'bca', 'BolC1t05429H' => 'bol', 'BolC3t12701H' => 'bol', 'BolC3t16617H' => 'bol', 'BolC5t34480H' => 'bol', 'BolC6t37291H' => 'bol', 'BolC8t50453H' => 'bol', 'BraA01t04278Z' => 'bra', 'BraA03t09495Z' => 'bra', 'BraA03t12753Z' => 'bra', 'BraA05t22710Z' => 'bra', 'BraA07t29832Z' => 'bra', 'BraA09t40084Z' => 'bra', 'C03p01450' => 'bna', 'C03p43460' => 'bna', 'C05p58260' => 'bna', 'C06p21060' => 'bna', 'C08p28450' => 'bna', 'CAN.G1166.32' => 'can', 'CAN.G1169.14' => 'can', 'CAN.G1755.4' => 'can', 'CAN.G309.14' => 'can', 'CAN.G900.46' => 'can', 'CANSAT54G1454' => 'cansat', 'CANSAT80G1774' => 'cansat', 'CARHR163070' => 'chi', 'CARHR272090' => 'chi', 'Carub.0003s0893' => 'cru', 'Carub.0005s1976' => 'cru', 'Carub.0006s0215' => 'cru', 'Ca_01389_v3' => 'car', 'Ca_08858_v3' => 'car', 'Ca_11493_v3' => 'car', 'CBR_g8453' => 'cbr', 'Cc01_g10600' => 'ccan', 'Cc02_g15090' => 'ccan', 'Cc04_g12540' => 'ccan', 'Cc06_g04140' => 'ccan', 'Cc06_g17260' => 'ccan', 'CDE02G3027' => 'cde', 'CDE06G0560' => 'cde', 'CDE06G2269' => 'cde', 'CDE07G1125' => 'cde', 'CDE11G0622' => 'cde', 'Cfa010317' => 'cfa', 'Cfa010348' => 'cfa', 'Cfa017590' => 'cfa', 'Ciclev10011046m.g' => 'ccl', 'Ciclev10013552m.g' => 'ccl', 'Ciclev10018887m.g' => 'ccl', 'Ciclev10024348m.g' => 'ccl', 'Ciclev10027840m.g' => 'ccl', 'CiPaw.09G173400' => 'cil', 'CiPaw.13G118100' => 'cil', 'CiPaw.13G118200' => 'cil', 'ClCG04G009260' => 'cla', 'ClCG06G017170' => 'cla', 'ClCG10G020200' => 'cla', 'COL.COLO4_03885' => 'col', 'COL.COLO4_17360' => 'col', 'COL.COLO4_25876' => 'col', 'COL.COLO4_25881' => 'col', 'COL.COLO4_25891' => 'col', 'COL.COLO4_26975' => 'col', 'COL.COLO4_34704' => 'col', 'Cpa.g.sc153.17' => 'cpa', 'Cpa.g.sc56.23' => 'cpa', 'Cpa.g.sc56.24' => 'cpa', 'Cre06.g269950' => 'cre', 'CsaV3_1G001310' => 'csa', 'CsaV3_3G035900' => 'csa', 'CsaV3_6G039850' => 'csa', 'CSS0008341' => 'camsi', 'CSS0009178' => 'camsi', 'CSS0039212' => 'camsi', 'CSS0041444' => 'camsi', 'DCAR_014993' => 'dca', 'DCAR_016471' => 'dca', 'DCAR_017688' => 'dca', 'DCAR_020824' => 'dca', 'Dinv20622' => 'din', 'Dinv29354' => 'din', 'Dinv34699' => 'din', 'Dinv35778' => 'din', 'Dinv37306' => 'din', 'Duzib093G0198' => 'dzi', 'Duzib106G1759' => 'dzi', 'Duzib128G1076' => 'dzi', 'Duzib150G1429' => 'dzi', 'Duzib170G0362' => 'dzi', 'ECA238G0239' => 'eca', 'ECA248G0147' => 'eca', 'ECA248G2986' => 'eca', 'ECA248G3803' => 'eca', 'EL10Ac7g16618' => 'bvu', 'EL10Ac8g19480' => 'bvu', 'EL10Ac8g19481' => 'bvu', 'Eucgr.B00242' => 'egr', 'Eucgr.K01256' => 'egr', 'Eucgr.K01258' => 'egr', 'FAN02G4387' => 'fan', 'FAN04G0370' => 'fan', 'FAN05G0474' => 'fan', 'FAN08G0313' => 'fan', 'FAN09G0455' => 'fan', 'FAN13G3025' => 'fan', 'FAN14G0014' => 'fan', 'FAN15G2158' => 'fan', 'FAN18G4379' => 'fan', 'FAN20G0838' => 'fan', 'FAN24G1112' => 'fan', 'FAN27G3163' => 'fan', 'FvH4_2g06940' => 'fve', 'FvH4_2g07260' => 'fve', 'FvH4_4g17680' => 'fve', 'FvH4_5g05770' => 'fve', 'FvH4_6g16220' => 'fve', 'Glyma.03G182800' => 'gma', 'Glyma.04G186000' => 'gma', 'Glyma.06G180000' => 'gma', 'Glyma.10G057100' => 'gma', 'Glyma.11G194900' => 'gma', 'Glyma.12G177100' => 'gma', 'Glyma.13G143600' => 'gma', 'Glyma.13G323600' => 'gma', 'Glyma.19G183400' => 'gma', 'Gohir.A01G140607' => 'ghi', 'Gohir.A04G072300' => 'ghi', 'Gohir.A09G147700' => 'ghi', 'Gohir.A11G324100' => 'ghi', 'Gohir.D01G130600' => 'ghi', 'Gohir.D03G137250' => 'ghi', 'Gohir.D04G110800' => 'ghi', 'Gohir.D09G143300' => 'ghi', 'Gohir.D11G343200' => 'ghi', 'Gorai.002G162100' => 'gra', 'Gorai.003G144300' => 'gra', 'Gorai.003G146600' => 'gra', 'Gorai.006G164800' => 'gra', 'Gorai.007G373300' => 'gra', 'Gorai.009G415000' => 'gra', 'GSVIVG01007689001' => 'vvi', 'GSVIVG01025723001' => 'vvi', 'GSVIVG01031517001' => 'vvi', 'HanXRQChr01g0027621' => 'han', 'HanXRQChr11g0346421' => 'han', 'HanXRQChr11g0350361' => 'han', 'HanXRQChr14g0452581' => 'han', 'HanXRQChr14g0454481' => 'han', 'Haze_02481' => 'cav', 'Haze_14469' => 'cav', 'Haze_20559' => 'cav', 'Haze_23756' => 'cav', 'Haze_26362' => 'cav', 'Hma1.2p1_0046F.1_g026800' => 'hma', 'Hma1.2p1_0569F.1_g180270' => 'hma', 'HPP92_022072' => 'vpl', 'HPP92_022586' => 'vpl', 'Hund12087' => 'sun', 'Hund20292' => 'sun', 'Lalb_Chr02g0155911' => 'lal', 'Lalb_Chr02g0156021' => 'lal', 'Lalb_Chr02g0159421' => 'lal', 'Lalb_Chr06g0171681' => 'lal', 'Lalb_Chr06g0175581' => 'lal', 'Lalb_Chr21g0315001' => 'lal', 'Lalb_Chr25g0289011' => 'lal', 'Lj1A194T70' => 'lonja', 'Lj1A194T72' => 'lonja', 'Lj1g0010086' => 'lja', 'Lj1g0015371' => 'lja', 'Lj2A116T69' => 'lonja', 'Lj3C984T7' => 'lonja', 'Lj3g0009007' => 'lja', 'Lj5g0027153' => 'lja', 'Lsat_1_v5_gn_1_52021' => 'lsa', 'Lsat_1_v5_gn_1_52061' => 'lsa', 'Lsat_1_v5_gn_1_63140' => 'lsa', 'Lsat_1_v5_gn_1_63160' => 'lsa', 'Lsat_1_v5_gn_2_106721' => 'lsa', 'Manes.04G015800' => 'mes', 'Manes.06G107800' => 'mes', 'Manes.08G009500' => 'mes', 'Manes.09G067260' => 'mes', 'Manes.11G150300' => 'mes', 'Mapoly0002s0308' => 'mpo', 'Mapoly0029s0002' => 'mpo', 'Mapoly0096s0020' => 'mpo', 'MBI16_g23862_MAGBIO' => 'mbi', 'MBI18_g14000_MAGBIO' => 'mbi', 'MBI18_g20771_MAGBIO' => 'mbi', 'MBI18_g25265_MAGBIO' => 'mbi', 'MCO01G507' => 'mco', 'MCO01G508' => 'mco', 'MCO05G732' => 'mco', 'MD03G1125700' => 'mdo', 'MD04G1094400' => 'mdo', 'MD06G1170300' => 'mdo', 'MD11G1142500' => 'mdo', 'MD12G1114300' => 'mdo', 'MD14G1175800' => 'mdo', 'Medtr1g063380' => 'mtr', 'Medtr2g095210' => 'mtr', 'Medtr2g095320' => 'mtr', 'Medtr7g101870' => 'mtr', 'MELO3C009349.2' => 'cme', 'MELO3C024461.2' => 'cme', 'MELO3C026279.2' => 'cme', 'Migut.D01983' => 'egut', 'Migut.D02258' => 'egut', 'Migut.J00517' => 'egut', 'Migut.N02574' => 'egut', 'MSTRG.17778' => 'ama', 'MSTRG.18685' => 'ama', 'MSTRG.21099' => 'ama', 'MSTRG.26696' => 'ama', 'Nitab4.5_0000063g0050' => 'nta', 'Nitab4.5_0000101g0430' => 'nta', 'Nitab4.5_0000106g0380' => 'nta', 'Nitab4.5_0001284g0010' => 'nta', 'Nitab4.5_0001802g0010' => 'nta', 'Nitab4.5_0002129g0040' => 'nta', 'Nitab4.5_0002286g0010' => 'nta', 'Nitab4.5_0002632g0090' => 'nta', 'Nitab4.5_0002845g0060' => 'nta', 'Nitab4.5_0006452g0040' => 'nta', 'Nitab4.5_0006989g0020' => 'nta', 'Nitab4.5_0011159g0010' => 'nta', 'Nn2g11571' => 'nnu', 'Nn4g22669' => 'nnu', 'Nn8g40578' => 'nnu', 'Oeu013536.1' => 'oeu', 'Oeu014011.1' => 'oeu', 'Oeu016981.1' => 'oeu', 'Oeu056286.1' => 'oeu', 'Os03g0151800' => 'osa', 'Os08g0413000' => 'osa', 'Os10g0442600' => 'osa', 'Peaxi162Scf00088g00061' => 'pax', 'Peaxi162Scf00089g01628' => 'pax', 'Peaxi162Scf00311g00045' => 'pax', 'Peaxi162Scf00389g00949' => 'pax', 'Peaxi162Scf00701g00515' => 'pax', 'Peaxi162Scf01159g00110' => 'pax', 'Peaxi162Scf03841g00002' => 'pax', 'PGR004G0369' => 'pgr', 'PGR083G1830' => 'pgr', 'PGR142G1733' => 'pgr', 'PGR142G2465' => 'pgr', 'PGSC0003DMG400010454' => 'stu', 'PGSC0003DMG400012003' => 'stu', 'PGSC0003DMG400018104' => 'stu', 'PGSC0003DMG400019676' => 'stu', 'PGSC0003DMG400021556' => 'stu', 'Phvul.007G149366' => 'pvu', 'Phvul.007G149432' => 'pvu', 'Phvul.009G175800' => 'pvu', 'Phvul.011G083800' => 'pvu', 'Potri.006G125500' => 'ptr', 'Potri.012G088200' => 'ptr', 'Potri.015G080600' => 'ptr', 'Potri.016G091600' => 'ptr', 'Potri.017G108200' => 'ptr', 'Pp3c13_4290' => 'ppa', 'Pp3c15_10770' => 'ppa', 'Pp3c26_8300' => 'ppa', 'Pp3c3_6980' => 'ppa', 'Pp3c4_26860' => 'ppa', 'Pp3c7_25950' => 'ppa', 'Pp3c9_3020' => 'ppa', 'PRCOL_00000863' => 'pco', 'PRCOL_00004109' => 'pco', 'Prupe.4G237600' => 'ppe', 'Prupe.6G107800' => 'ppe', 'Prupe.6G233700' => 'ppe', 'Psat0s2621g0040' => 'psa', 'Psat5g280600' => 'psa', 'Psat6g073160' => 'psa', 'PSO017G4150' => 'pso', 'PSO063G2537' => 'pso', 'PSO339G3313' => 'pso', 'PSO801G0113' => 'pso', 'PSO832G0543' => 'pso', 'PSO832G1837' => 'pso', 'PSO832G3026' => 'pso', 'QL01p015943' => 'qlo', 'QL01p015951' => 'qlo', 'QL01p015963' => 'qlo', 'QL02p091180' => 'qlo', 'QL05p042048' => 'qlo', 'QL05p052073' => 'qlo', 'QL05p052843' => 'qlo', 'QL07p043685' => 'qlo', 'QL08p000298' => 'qlo', 'QL10p008753' => 'qlo', 'RcHm_v2.0_Chr3g0470061' => 'rch', 'RcHm_v2.0_Chr4g0421621' => 'rch', 'RcHm_v2.0_Chr6g0259281' => 'rch', 'RcHm_v2.0_Chr6g0259871' => 'rch', 'RcHm_v2.0_Chr7g0193051' => 'rch', 'Rhsim08G0175000' => 'rsi', 'Rhsim13G0098600' => 'rsi', 'Rhsim13G0098700' => 'rsi', 'Sabra06G0099100' => 'sbr', 'Sabra12G0063000' => 'sbr', 'Sabra15G0072400' => 'sbr', 'Sabra15G0104700' => 'sbr', 'Sabra16G0097300' => 'sbr', 'SalBow3G0341' => 'sbo', 'SalBow3G0495' => 'sbo', 'SalBow3G1235' => 'sbo', 'SalBow5G2911' => 'sbo', 'SalBow5G5694' => 'sbo', 'Sc02g0001700' => 'sci', 'Sc20g0005410' => 'sci', 'Sc20g0005440' => 'sci', 'Sed0003418' => 'sed', 'Sed0007648' => 'sed', 'Sed0009250' => 'sed', 'Sed0013960' => 'sed', 'Sed0027845' => 'sed', 'SEGI_01673' => 'sgi', 'SEGI_02788' => 'sgi', 'SEGI_07061' => 'sgi', 'SEGI_09723' => 'sgi', 'SEGI_10853' => 'sgi', 'SEGI_20551' => 'sgi', 'SEGI_20763' => 'sgi', 'SEGI_21910' => 'sgi', 'SEGI_25498' => 'sgi', 'SEGI_32518' => 'sgi', 'SEGI_39741' => 'sgi', 'SGA_v2.0_scaffold116G32211' => 'sas', 'SGA_v2.0_scaffold127G34040' => 'sas', 'SGA_v2.0_scaffold40G15504' => 'sas', 'SGA_v2.0_scaffold889G53696' => 'sas', 'SHI12473' => 'shi', 'SMO118G0023' => 'smo', 'SMO169G0030' => 'smo', 'Solyc03g112590.4' => 'sly', 'Solyc06g074980.3' => 'sly', 'Solyc09g008070.4' => 'sly', 'Solyc10g084050.2' => 'sly', 'Solyc11g069720.2' => 'sly', 'Sopen03g031660' => 'spe', 'Sopen06g031380' => 'spe', 'Sopen09g002870' => 'spe', 'Sopen10g033500' => 'spe', 'Sopen11g028560' => 'spe', 'Sp3g08170' => 'spa', 'Sp5g09110' => 'spa', 'Sp6g39400' => 'spa', 'TAR369G0240' => 'tar', 'TAR445G0001' => 'tar', 'TAR622G1132' => 'tar', 'TAR623G1281' => 'tar', 'TAR629G2012' => 'tar', 'TAR633G2764' => 'tar', 'TAR636G1007' => 'tar', 'THA.LOC104816345' => 'tha', 'THA.LOC104823234' => 'tha', 'THA.LOC104823479' => 'tha', 'THA.LOC104826910' => 'tha', 'Thecc.05G064700' => 'tca', 'Thecc.09G347800' => 'tca', 'Thhalv10000577m.g' => 'esa', 'Thhalv10012714m.g' => 'esa', 'Thhalv10020085m.g' => 'esa', 'TPR.G11434' => 'tpr', 'TPR.G11534' => 'tpr', 'TPR.G20216' => 'tpr', 'TPR.G25422' => 'tpr', 'TPR.G9362' => 'tpr', 'TWI09G1387' => 'twi', 'TWI53G1848' => 'twi', 'TWI74G0493' => 'twi', 'TWI75G1154' => 'twi', 'TWI77G0991' => 'twi', 'unitig_22.g6655' => 'ugi', 'unitig_27.g25052' => 'ugi', 'unitig_699.g19190' => 'ugi', 'unitig_8.g3296' => 'ugi', 'vmacro19417' => 'vma', 'VMungo0720G2390' => 'vmu', 'VMungo1127G0365' => 'vmu', 'VMungo1309G1584' => 'vmu', 'Zm00001eb004170' => 'zma', 'Zm00001eb047170' => 'zma', 'Zm00001eb178950' => 'zma', 'Zm00001eb222570' => 'zma', 'Zm00001eb403110' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'ORTHO05D001255', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D001255' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'ORTHO05D001255', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '446', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false, 'has_blast_db' => true ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'ORTHO05D001255' ) ), 'genes' => array( 'A01p42100' => 'bna', 'A03p01140' => 'bna', 'A03p35810' => 'bna', 'A05p39210' => 'bna', 'A07p21450' => 'bna', 'A09p46200' => 'bna', 'Aa31LG10G8420' => 'aar', 'Aa31LG3G2300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3050' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3060' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1131' => 'aag', 'Actinidia13073' => 'ach', 'Actinidia24129' => 'ach', 'Actinidia28900' => 'ach', 'Ah.08g211660' => 'amhyb', 'Ah.14g085860' => 'amhyb', 'AL3G21070' => 'aly', 'AL5G34110' => 'aly', 'AL6G12670' => 'aly', 'Aqoxy2G01785' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N72S3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S6Q2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87HTU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F2DT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSV57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7JGCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF2L6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R086A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UBK6DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAKG1R' => 'arhy', 'AT3G09840' => 'ath', 'AT3G53230' => 'ath', 'AT5G03340' => 'ath', 'ATR1132G014' => 'atr', 'ATR1152G092' => 'atr', 'Atru.chr3.3556' => 'acertr', 'Atru.chr8.1826' => 'acertr', 'Atru.chr9.2536' => 'acertr', 'AUR62008175' => 'cqu', 'AUR62026909' => 'cqu', 'AUR62038585' => 'cqu', 'AUR62039867' => 'cqu', 'AUR62040576' => 'cqu', 'AUR62042049' => 'cqu', 'BcaB01g05824' => 'bca', 'BcaB01g05845' => 'bca', 'BcaB02g07800' => 'bca', 'BcaB03g11585' => 'bca', 'BcaB04g21241' => 'bca', 'BcaC01g04249' => 'bca', 'BcaC05g29495' => 'bca', 'BcaC05g29706' => 'bca', 'BcaC07g39682' => 'bca', 'BcaC09g48122' => 'bca', 'BcaNung06804' => 'bca', 'BolC1t05429H' => 'bol', 'BolC3t12701H' => 'bol', 'BolC3t16617H' => 'bol', 'BolC5t34480H' => 'bol', 'BolC6t37291H' => 'bol', 'BolC8t50453H' => 'bol', 'BraA01t04278Z' => 'bra', 'BraA03t09495Z' => 'bra', 'BraA03t12753Z' => 'bra', 'BraA05t22710Z' => 'bra', 'BraA07t29832Z' => 'bra', 'BraA09t40084Z' => 'bra', 'C03p01450' => 'bna', 'C03p43460' => 'bna', 'C05p58260' => 'bna', 'C06p21060' => 'bna', 'C08p28450' => 'bna', 'CAN.G1166.32' => 'can', 'CAN.G1169.14' => 'can', 'CAN.G1755.4' => 'can', 'CAN.G309.14' => 'can', 'CAN.G900.46' => 'can', 'CANSAT54G1454' => 'cansat', 'CANSAT80G1774' => 'cansat', 'CARHR163070' => 'chi', 'CARHR272090' => 'chi', 'Carub.0003s0893' => 'cru', 'Carub.0005s1976' => 'cru', 'Carub.0006s0215' => 'cru', 'Ca_01389_v3' => 'car', 'Ca_08858_v3' => 'car', 'Ca_11493_v3' => 'car', 'CBR_g8453' => 'cbr', 'Cc01_g10600' => 'ccan', 'Cc02_g15090' => 'ccan', 'Cc04_g12540' => 'ccan', 'Cc06_g04140' => 'ccan', 'Cc06_g17260' => 'ccan', 'CDE02G3027' => 'cde', 'CDE06G0560' => 'cde', 'CDE06G2269' => 'cde', 'CDE07G1125' => 'cde', 'CDE11G0622' => 'cde', 'Cfa010317' => 'cfa', 'Cfa010348' => 'cfa', 'Cfa017590' => 'cfa', 'Ciclev10011046m.g' => 'ccl', 'Ciclev10013552m.g' => 'ccl', 'Ciclev10018887m.g' => 'ccl', 'Ciclev10024348m.g' => 'ccl', 'Ciclev10027840m.g' => 'ccl', 'CiPaw.09G173400' => 'cil', 'CiPaw.13G118100' => 'cil', 'CiPaw.13G118200' => 'cil', 'ClCG04G009260' => 'cla', 'ClCG06G017170' => 'cla', 'ClCG10G020200' => 'cla', 'COL.COLO4_03885' => 'col', 'COL.COLO4_17360' => 'col', 'COL.COLO4_25876' => 'col', 'COL.COLO4_25881' => 'col', 'COL.COLO4_25891' => 'col', 'COL.COLO4_26975' => 'col', 'COL.COLO4_34704' => 'col', 'Cpa.g.sc153.17' => 'cpa', 'Cpa.g.sc56.23' => 'cpa', 'Cpa.g.sc56.24' => 'cpa', 'Cre06.g269950' => 'cre', 'CsaV3_1G001310' => 'csa', 'CsaV3_3G035900' => 'csa', 'CsaV3_6G039850' => 'csa', 'CSS0008341' => 'camsi', 'CSS0009178' => 'camsi', 'CSS0039212' => 'camsi', 'CSS0041444' => 'camsi', 'DCAR_014993' => 'dca', 'DCAR_016471' => 'dca', 'DCAR_017688' => 'dca', 'DCAR_020824' => 'dca', 'Dinv20622' => 'din', 'Dinv29354' => 'din', 'Dinv34699' => 'din', 'Dinv35778' => 'din', 'Dinv37306' => 'din', 'Duzib093G0198' => 'dzi', 'Duzib106G1759' => 'dzi', 'Duzib128G1076' => 'dzi', 'Duzib150G1429' => 'dzi', 'Duzib170G0362' => 'dzi', 'ECA238G0239' => 'eca', 'ECA248G0147' => 'eca', 'ECA248G2986' => 'eca', 'ECA248G3803' => 'eca', 'EL10Ac7g16618' => 'bvu', 'EL10Ac8g19480' => 'bvu', 'EL10Ac8g19481' => 'bvu', 'Eucgr.B00242' => 'egr', 'Eucgr.K01256' => 'egr', 'Eucgr.K01258' => 'egr', 'FAN02G4387' => 'fan', 'FAN04G0370' => 'fan', 'FAN05G0474' => 'fan', 'FAN08G0313' => 'fan', 'FAN09G0455' => 'fan', 'FAN13G3025' => 'fan', 'FAN14G0014' => 'fan', 'FAN15G2158' => 'fan', 'FAN18G4379' => 'fan', 'FAN20G0838' => 'fan', 'FAN24G1112' => 'fan', 'FAN27G3163' => 'fan', 'FvH4_2g06940' => 'fve', 'FvH4_2g07260' => 'fve', 'FvH4_4g17680' => 'fve', 'FvH4_5g05770' => 'fve', 'FvH4_6g16220' => 'fve', 'Glyma.03G182800' => 'gma', 'Glyma.04G186000' => 'gma', 'Glyma.06G180000' => 'gma', 'Glyma.10G057100' => 'gma', 'Glyma.11G194900' => 'gma', 'Glyma.12G177100' => 'gma', 'Glyma.13G143600' => 'gma', 'Glyma.13G323600' => 'gma', 'Glyma.19G183400' => 'gma', 'Gohir.A01G140607' => 'ghi', 'Gohir.A04G072300' => 'ghi', 'Gohir.A09G147700' => 'ghi', 'Gohir.A11G324100' => 'ghi', 'Gohir.D01G130600' => 'ghi', 'Gohir.D03G137250' => 'ghi', 'Gohir.D04G110800' => 'ghi', 'Gohir.D09G143300' => 'ghi', 'Gohir.D11G343200' => 'ghi', 'Gorai.002G162100' => 'gra', 'Gorai.003G144300' => 'gra', 'Gorai.003G146600' => 'gra', 'Gorai.006G164800' => 'gra', 'Gorai.007G373300' => 'gra', 'Gorai.009G415000' => 'gra', 'GSVIVG01007689001' => 'vvi', 'GSVIVG01025723001' => 'vvi', 'GSVIVG01031517001' => 'vvi', 'HanXRQChr01g0027621' => 'han', 'HanXRQChr11g0346421' => 'han', 'HanXRQChr11g0350361' => 'han', 'HanXRQChr14g0452581' => 'han', 'HanXRQChr14g0454481' => 'han', 'Haze_02481' => 'cav', 'Haze_14469' => 'cav', 'Haze_20559' => 'cav', 'Haze_23756' => 'cav', 'Haze_26362' => 'cav', 'Hma1.2p1_0046F.1_g026800' => 'hma', 'Hma1.2p1_0569F.1_g180270' => 'hma', 'HPP92_022072' => 'vpl', 'HPP92_022586' => 'vpl', 'Hund12087' => 'sun', 'Hund20292' => 'sun', 'Lalb_Chr02g0155911' => 'lal', 'Lalb_Chr02g0156021' => 'lal', 'Lalb_Chr02g0159421' => 'lal', 'Lalb_Chr06g0171681' => 'lal', 'Lalb_Chr06g0175581' => 'lal', 'Lalb_Chr21g0315001' => 'lal', 'Lalb_Chr25g0289011' => 'lal', 'Lj1A194T70' => 'lonja', 'Lj1A194T72' => 'lonja', 'Lj1g0010086' => 'lja', 'Lj1g0015371' => 'lja', 'Lj2A116T69' => 'lonja', 'Lj3C984T7' => 'lonja', 'Lj3g0009007' => 'lja', 'Lj5g0027153' => 'lja', 'Lsat_1_v5_gn_1_52021' => 'lsa', 'Lsat_1_v5_gn_1_52061' => 'lsa', 'Lsat_1_v5_gn_1_63140' => 'lsa', 'Lsat_1_v5_gn_1_63160' => 'lsa', 'Lsat_1_v5_gn_2_106721' => 'lsa', 'Manes.04G015800' => 'mes', 'Manes.06G107800' => 'mes', 'Manes.08G009500' => 'mes', 'Manes.09G067260' => 'mes', 'Manes.11G150300' => 'mes', 'Mapoly0002s0308' => 'mpo', 'Mapoly0029s0002' => 'mpo', 'Mapoly0096s0020' => 'mpo', 'MBI16_g23862_MAGBIO' => 'mbi', 'MBI18_g14000_MAGBIO' => 'mbi', 'MBI18_g20771_MAGBIO' => 'mbi', 'MBI18_g25265_MAGBIO' => 'mbi', 'MCO01G507' => 'mco', 'MCO01G508' => 'mco', 'MCO05G732' => 'mco', 'MD03G1125700' => 'mdo', 'MD04G1094400' => 'mdo', 'MD06G1170300' => 'mdo', 'MD11G1142500' => 'mdo', 'MD12G1114300' => 'mdo', 'MD14G1175800' => 'mdo', 'Medtr1g063380' => 'mtr', 'Medtr2g095210' => 'mtr', 'Medtr2g095320' => 'mtr', 'Medtr7g101870' => 'mtr', 'MELO3C009349.2' => 'cme', 'MELO3C024461.2' => 'cme', 'MELO3C026279.2' => 'cme', 'Migut.D01983' => 'egut', 'Migut.D02258' => 'egut', 'Migut.J00517' => 'egut', 'Migut.N02574' => 'egut', 'MSTRG.17778' => 'ama', 'MSTRG.18685' => 'ama', 'MSTRG.21099' => 'ama', 'MSTRG.26696' => 'ama', 'Nitab4.5_0000063g0050' => 'nta', 'Nitab4.5_0000101g0430' => 'nta', 'Nitab4.5_0000106g0380' => 'nta', 'Nitab4.5_0001284g0010' => 'nta', 'Nitab4.5_0001802g0010' => 'nta', 'Nitab4.5_0002129g0040' => 'nta', 'Nitab4.5_0002286g0010' => 'nta', 'Nitab4.5_0002632g0090' => 'nta', 'Nitab4.5_0002845g0060' => 'nta', 'Nitab4.5_0006452g0040' => 'nta', 'Nitab4.5_0006989g0020' => 'nta', 'Nitab4.5_0011159g0010' => 'nta', 'Nn2g11571' => 'nnu', 'Nn4g22669' => 'nnu', 'Nn8g40578' => 'nnu', 'Oeu013536.1' => 'oeu', 'Oeu014011.1' => 'oeu', 'Oeu016981.1' => 'oeu', 'Oeu056286.1' => 'oeu', 'Os03g0151800' => 'osa', 'Os08g0413000' => 'osa', 'Os10g0442600' => 'osa', 'Peaxi162Scf00088g00061' => 'pax', 'Peaxi162Scf00089g01628' => 'pax', 'Peaxi162Scf00311g00045' => 'pax', 'Peaxi162Scf00389g00949' => 'pax', 'Peaxi162Scf00701g00515' => 'pax', 'Peaxi162Scf01159g00110' => 'pax', 'Peaxi162Scf03841g00002' => 'pax', 'PGR004G0369' => 'pgr', 'PGR083G1830' => 'pgr', 'PGR142G1733' => 'pgr', 'PGR142G2465' => 'pgr', 'PGSC0003DMG400010454' => 'stu', 'PGSC0003DMG400012003' => 'stu', 'PGSC0003DMG400018104' => 'stu', 'PGSC0003DMG400019676' => 'stu', 'PGSC0003DMG400021556' => 'stu', 'Phvul.007G149366' => 'pvu', 'Phvul.007G149432' => 'pvu', 'Phvul.009G175800' => 'pvu', 'Phvul.011G083800' => 'pvu', 'Potri.006G125500' => 'ptr', 'Potri.012G088200' => 'ptr', 'Potri.015G080600' => 'ptr', 'Potri.016G091600' => 'ptr', 'Potri.017G108200' => 'ptr', 'Pp3c13_4290' => 'ppa', 'Pp3c15_10770' => 'ppa', 'Pp3c26_8300' => 'ppa', 'Pp3c3_6980' => 'ppa', 'Pp3c4_26860' => 'ppa', 'Pp3c7_25950' => 'ppa', 'Pp3c9_3020' => 'ppa', 'PRCOL_00000863' => 'pco', 'PRCOL_00004109' => 'pco', 'Prupe.4G237600' => 'ppe', 'Prupe.6G107800' => 'ppe', 'Prupe.6G233700' => 'ppe', 'Psat0s2621g0040' => 'psa', 'Psat5g280600' => 'psa', 'Psat6g073160' => 'psa', 'PSO017G4150' => 'pso', 'PSO063G2537' => 'pso', 'PSO339G3313' => 'pso', 'PSO801G0113' => 'pso', 'PSO832G0543' => 'pso', 'PSO832G1837' => 'pso', 'PSO832G3026' => 'pso', 'QL01p015943' => 'qlo', 'QL01p015951' => 'qlo', 'QL01p015963' => 'qlo', 'QL02p091180' => 'qlo', 'QL05p042048' => 'qlo', 'QL05p052073' => 'qlo', 'QL05p052843' => 'qlo', 'QL07p043685' => 'qlo', 'QL08p000298' => 'qlo', 'QL10p008753' => 'qlo', 'RcHm_v2.0_Chr3g0470061' => 'rch', 'RcHm_v2.0_Chr4g0421621' => 'rch', 'RcHm_v2.0_Chr6g0259281' => 'rch', 'RcHm_v2.0_Chr6g0259871' => 'rch', 'RcHm_v2.0_Chr7g0193051' => 'rch', 'Rhsim08G0175000' => 'rsi', 'Rhsim13G0098600' => 'rsi', 'Rhsim13G0098700' => 'rsi', 'Sabra06G0099100' => 'sbr', 'Sabra12G0063000' => 'sbr', 'Sabra15G0072400' => 'sbr', 'Sabra15G0104700' => 'sbr', 'Sabra16G0097300' => 'sbr', 'SalBow3G0341' => 'sbo', 'SalBow3G0495' => 'sbo', 'SalBow3G1235' => 'sbo', 'SalBow5G2911' => 'sbo', 'SalBow5G5694' => 'sbo', 'Sc02g0001700' => 'sci', 'Sc20g0005410' => 'sci', 'Sc20g0005440' => 'sci', 'Sed0003418' => 'sed', 'Sed0007648' => 'sed', 'Sed0009250' => 'sed', 'Sed0013960' => 'sed', 'Sed0027845' => 'sed', 'SEGI_01673' => 'sgi', 'SEGI_02788' => 'sgi', 'SEGI_07061' => 'sgi', 'SEGI_09723' => 'sgi', 'SEGI_10853' => 'sgi', 'SEGI_20551' => 'sgi', 'SEGI_20763' => 'sgi', 'SEGI_21910' => 'sgi', 'SEGI_25498' => 'sgi', 'SEGI_32518' => 'sgi', 'SEGI_39741' => 'sgi', 'SGA_v2.0_scaffold116G32211' => 'sas', 'SGA_v2.0_scaffold127G34040' => 'sas', 'SGA_v2.0_scaffold40G15504' => 'sas', 'SGA_v2.0_scaffold889G53696' => 'sas', 'SHI12473' => 'shi', 'SMO118G0023' => 'smo', 'SMO169G0030' => 'smo', 'Solyc03g112590.4' => 'sly', 'Solyc06g074980.3' => 'sly', 'Solyc09g008070.4' => 'sly', 'Solyc10g084050.2' => 'sly', 'Solyc11g069720.2' => 'sly', 'Sopen03g031660' => 'spe', 'Sopen06g031380' => 'spe', 'Sopen09g002870' => 'spe', 'Sopen10g033500' => 'spe', 'Sopen11g028560' => 'spe', 'Sp3g08170' => 'spa', 'Sp5g09110' => 'spa', 'Sp6g39400' => 'spa', 'TAR369G0240' => 'tar', 'TAR445G0001' => 'tar', 'TAR622G1132' => 'tar', 'TAR623G1281' => 'tar', 'TAR629G2012' => 'tar', 'TAR633G2764' => 'tar', 'TAR636G1007' => 'tar', 'THA.LOC104816345' => 'tha', 'THA.LOC104823234' => 'tha', 'THA.LOC104823479' => 'tha', 'THA.LOC104826910' => 'tha', 'Thecc.05G064700' => 'tca', 'Thecc.09G347800' => 'tca', 'Thhalv10000577m.g' => 'esa', 'Thhalv10012714m.g' => 'esa', 'Thhalv10020085m.g' => 'esa', 'TPR.G11434' => 'tpr', 'TPR.G11534' => 'tpr', 'TPR.G20216' => 'tpr', 'TPR.G25422' => 'tpr', 'TPR.G9362' => 'tpr', 'TWI09G1387' => 'twi', 'TWI53G1848' => 'twi', 'TWI74G0493' => 'twi', 'TWI75G1154' => 'twi', 'TWI77G0991' => 'twi', 'unitig_22.g6655' => 'ugi', 'unitig_27.g25052' => 'ugi', 'unitig_699.g19190' => 'ugi', 'unitig_8.g3296' => 'ugi', 'vmacro19417' => 'vma', 'VMungo0720G2390' => 'vmu', 'VMungo1127G0365' => 'vmu', 'VMungo1309G1584' => 'vmu', 'Zm00001eb004170' => 'zma', 'Zm00001eb047170' => 'zma', 'Zm00001eb178950' => 'zma', 'Zm00001eb222570' => 'zma', 'Zm00001eb403110' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'ORTHO05D001255' $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D001255' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'ORTHO05D001255' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'ORTHO05D001255' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
Warning (2): Invalid argument supplied for foreach() [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D001255', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '446', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false, 'has_blast_db' => true ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A01p42100' => 'bna', 'A03p01140' => 'bna', 'A03p35810' => 'bna', 'A05p39210' => 'bna', 'A07p21450' => 'bna', 'A09p46200' => 'bna', 'Aa31LG10G8420' => 'aar', 'Aa31LG3G2300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3050' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3060' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1131' => 'aag', 'Actinidia13073' => 'ach', 'Actinidia24129' => 'ach', 'Actinidia28900' => 'ach', 'Ah.08g211660' => 'amhyb', 'Ah.14g085860' => 'amhyb', 'AL3G21070' => 'aly', 'AL5G34110' => 'aly', 'AL6G12670' => 'aly', 'Aqoxy2G01785' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N72S3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S6Q2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87HTU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F2DT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSV57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7JGCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF2L6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R086A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UBK6DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAKG1R' => 'arhy', 'AT3G09840' => 'ath', 'AT3G53230' => 'ath', 'AT5G03340' => 'ath', 'ATR1132G014' => 'atr', 'ATR1152G092' => 'atr', 'Atru.chr3.3556' => 'acertr', 'Atru.chr8.1826' => 'acertr', 'Atru.chr9.2536' => 'acertr', 'AUR62008175' => 'cqu', 'AUR62026909' => 'cqu', 'AUR62038585' => 'cqu', 'AUR62039867' => 'cqu', 'AUR62040576' => 'cqu', 'AUR62042049' => 'cqu', 'BcaB01g05824' => 'bca', 'BcaB01g05845' => 'bca', 'BcaB02g07800' => 'bca', 'BcaB03g11585' => 'bca', 'BcaB04g21241' => 'bca', 'BcaC01g04249' => 'bca', 'BcaC05g29495' => 'bca', 'BcaC05g29706' => 'bca', 'BcaC07g39682' => 'bca', 'BcaC09g48122' => 'bca', 'BcaNung06804' => 'bca', 'BolC1t05429H' => 'bol', 'BolC3t12701H' => 'bol', 'BolC3t16617H' => 'bol', 'BolC5t34480H' => 'bol', 'BolC6t37291H' => 'bol', 'BolC8t50453H' => 'bol', 'BraA01t04278Z' => 'bra', 'BraA03t09495Z' => 'bra', 'BraA03t12753Z' => 'bra', 'BraA05t22710Z' => 'bra', 'BraA07t29832Z' => 'bra', 'BraA09t40084Z' => 'bra', 'C03p01450' => 'bna', 'C03p43460' => 'bna', 'C05p58260' => 'bna', 'C06p21060' => 'bna', 'C08p28450' => 'bna', 'CAN.G1166.32' => 'can', 'CAN.G1169.14' => 'can', 'CAN.G1755.4' => 'can', 'CAN.G309.14' => 'can', 'CAN.G900.46' => 'can', 'CANSAT54G1454' => 'cansat', 'CANSAT80G1774' => 'cansat', 'CARHR163070' => 'chi', 'CARHR272090' => 'chi', 'Carub.0003s0893' => 'cru', 'Carub.0005s1976' => 'cru', 'Carub.0006s0215' => 'cru', 'Ca_01389_v3' => 'car', 'Ca_08858_v3' => 'car', 'Ca_11493_v3' => 'car', 'CBR_g8453' => 'cbr', 'Cc01_g10600' => 'ccan', 'Cc02_g15090' => 'ccan', 'Cc04_g12540' => 'ccan', 'Cc06_g04140' => 'ccan', 'Cc06_g17260' => 'ccan', 'CDE02G3027' => 'cde', 'CDE06G0560' => 'cde', 'CDE06G2269' => 'cde', 'CDE07G1125' => 'cde', 'CDE11G0622' => 'cde', 'Cfa010317' => 'cfa', 'Cfa010348' => 'cfa', 'Cfa017590' => 'cfa', 'Ciclev10011046m.g' => 'ccl', 'Ciclev10013552m.g' => 'ccl', 'Ciclev10018887m.g' => 'ccl', 'Ciclev10024348m.g' => 'ccl', 'Ciclev10027840m.g' => 'ccl', 'CiPaw.09G173400' => 'cil', 'CiPaw.13G118100' => 'cil', 'CiPaw.13G118200' => 'cil', 'ClCG04G009260' => 'cla', 'ClCG06G017170' => 'cla', 'ClCG10G020200' => 'cla', 'COL.COLO4_03885' => 'col', 'COL.COLO4_17360' => 'col', 'COL.COLO4_25876' => 'col', 'COL.COLO4_25881' => 'col', 'COL.COLO4_25891' => 'col', 'COL.COLO4_26975' => 'col', 'COL.COLO4_34704' => 'col', 'Cpa.g.sc153.17' => 'cpa', 'Cpa.g.sc56.23' => 'cpa', 'Cpa.g.sc56.24' => 'cpa', 'Cre06.g269950' => 'cre', 'CsaV3_1G001310' => 'csa', 'CsaV3_3G035900' => 'csa', 'CsaV3_6G039850' => 'csa', 'CSS0008341' => 'camsi', 'CSS0009178' => 'camsi', 'CSS0039212' => 'camsi', 'CSS0041444' => 'camsi', 'DCAR_014993' => 'dca', 'DCAR_016471' => 'dca', 'DCAR_017688' => 'dca', 'DCAR_020824' => 'dca', 'Dinv20622' => 'din', 'Dinv29354' => 'din', 'Dinv34699' => 'din', 'Dinv35778' => 'din', 'Dinv37306' => 'din', 'Duzib093G0198' => 'dzi', 'Duzib106G1759' => 'dzi', 'Duzib128G1076' => 'dzi', 'Duzib150G1429' => 'dzi', 'Duzib170G0362' => 'dzi', 'ECA238G0239' => 'eca', 'ECA248G0147' => 'eca', 'ECA248G2986' => 'eca', 'ECA248G3803' => 'eca', 'EL10Ac7g16618' => 'bvu', 'EL10Ac8g19480' => 'bvu', 'EL10Ac8g19481' => 'bvu', 'Eucgr.B00242' => 'egr', 'Eucgr.K01256' => 'egr', 'Eucgr.K01258' => 'egr', 'FAN02G4387' => 'fan', 'FAN04G0370' => 'fan', 'FAN05G0474' => 'fan', 'FAN08G0313' => 'fan', 'FAN09G0455' => 'fan', 'FAN13G3025' => 'fan', 'FAN14G0014' => 'fan', 'FAN15G2158' => 'fan', 'FAN18G4379' => 'fan', 'FAN20G0838' => 'fan', 'FAN24G1112' => 'fan', 'FAN27G3163' => 'fan', 'FvH4_2g06940' => 'fve', 'FvH4_2g07260' => 'fve', 'FvH4_4g17680' => 'fve', 'FvH4_5g05770' => 'fve', 'FvH4_6g16220' => 'fve', 'Glyma.03G182800' => 'gma', 'Glyma.04G186000' => 'gma', 'Glyma.06G180000' => 'gma', 'Glyma.10G057100' => 'gma', 'Glyma.11G194900' => 'gma', 'Glyma.12G177100' => 'gma', 'Glyma.13G143600' => 'gma', 'Glyma.13G323600' => 'gma', 'Glyma.19G183400' => 'gma', 'Gohir.A01G140607' => 'ghi', 'Gohir.A04G072300' => 'ghi', 'Gohir.A09G147700' => 'ghi', 'Gohir.A11G324100' => 'ghi', 'Gohir.D01G130600' => 'ghi', 'Gohir.D03G137250' => 'ghi', 'Gohir.D04G110800' => 'ghi', 'Gohir.D09G143300' => 'ghi', 'Gohir.D11G343200' => 'ghi', 'Gorai.002G162100' => 'gra', 'Gorai.003G144300' => 'gra', 'Gorai.003G146600' => 'gra', 'Gorai.006G164800' => 'gra', 'Gorai.007G373300' => 'gra', 'Gorai.009G415000' => 'gra', 'GSVIVG01007689001' => 'vvi', 'GSVIVG01025723001' => 'vvi', 'GSVIVG01031517001' => 'vvi', 'HanXRQChr01g0027621' => 'han', 'HanXRQChr11g0346421' => 'han', 'HanXRQChr11g0350361' => 'han', 'HanXRQChr14g0452581' => 'han', 'HanXRQChr14g0454481' => 'han', 'Haze_02481' => 'cav', 'Haze_14469' => 'cav', 'Haze_20559' => 'cav', 'Haze_23756' => 'cav', 'Haze_26362' => 'cav', 'Hma1.2p1_0046F.1_g026800' => 'hma', 'Hma1.2p1_0569F.1_g180270' => 'hma', 'HPP92_022072' => 'vpl', 'HPP92_022586' => 'vpl', 'Hund12087' => 'sun', 'Hund20292' => 'sun', 'Lalb_Chr02g0155911' => 'lal', 'Lalb_Chr02g0156021' => 'lal', 'Lalb_Chr02g0159421' => 'lal', 'Lalb_Chr06g0171681' => 'lal', 'Lalb_Chr06g0175581' => 'lal', 'Lalb_Chr21g0315001' => 'lal', 'Lalb_Chr25g0289011' => 'lal', 'Lj1A194T70' => 'lonja', 'Lj1A194T72' => 'lonja', 'Lj1g0010086' => 'lja', 'Lj1g0015371' => 'lja', 'Lj2A116T69' => 'lonja', 'Lj3C984T7' => 'lonja', 'Lj3g0009007' => 'lja', 'Lj5g0027153' => 'lja', 'Lsat_1_v5_gn_1_52021' => 'lsa', 'Lsat_1_v5_gn_1_52061' => 'lsa', 'Lsat_1_v5_gn_1_63140' => 'lsa', 'Lsat_1_v5_gn_1_63160' => 'lsa', 'Lsat_1_v5_gn_2_106721' => 'lsa', 'Manes.04G015800' => 'mes', 'Manes.06G107800' => 'mes', 'Manes.08G009500' => 'mes', 'Manes.09G067260' => 'mes', 'Manes.11G150300' => 'mes', 'Mapoly0002s0308' => 'mpo', 'Mapoly0029s0002' => 'mpo', 'Mapoly0096s0020' => 'mpo', 'MBI16_g23862_MAGBIO' => 'mbi', 'MBI18_g14000_MAGBIO' => 'mbi', 'MBI18_g20771_MAGBIO' => 'mbi', 'MBI18_g25265_MAGBIO' => 'mbi', 'MCO01G507' => 'mco', 'MCO01G508' => 'mco', 'MCO05G732' => 'mco', 'MD03G1125700' => 'mdo', 'MD04G1094400' => 'mdo', 'MD06G1170300' => 'mdo', 'MD11G1142500' => 'mdo', 'MD12G1114300' => 'mdo', 'MD14G1175800' => 'mdo', 'Medtr1g063380' => 'mtr', 'Medtr2g095210' => 'mtr', 'Medtr2g095320' => 'mtr', 'Medtr7g101870' => 'mtr', 'MELO3C009349.2' => 'cme', 'MELO3C024461.2' => 'cme', 'MELO3C026279.2' => 'cme', 'Migut.D01983' => 'egut', 'Migut.D02258' => 'egut', 'Migut.J00517' => 'egut', 'Migut.N02574' => 'egut', 'MSTRG.17778' => 'ama', 'MSTRG.18685' => 'ama', 'MSTRG.21099' => 'ama', 'MSTRG.26696' => 'ama', 'Nitab4.5_0000063g0050' => 'nta', 'Nitab4.5_0000101g0430' => 'nta', 'Nitab4.5_0000106g0380' => 'nta', 'Nitab4.5_0001284g0010' => 'nta', 'Nitab4.5_0001802g0010' => 'nta', 'Nitab4.5_0002129g0040' => 'nta', 'Nitab4.5_0002286g0010' => 'nta', 'Nitab4.5_0002632g0090' => 'nta', 'Nitab4.5_0002845g0060' => 'nta', 'Nitab4.5_0006452g0040' => 'nta', 'Nitab4.5_0006989g0020' => 'nta', 'Nitab4.5_0011159g0010' => 'nta', 'Nn2g11571' => 'nnu', 'Nn4g22669' => 'nnu', 'Nn8g40578' => 'nnu', 'Oeu013536.1' => 'oeu', 'Oeu014011.1' => 'oeu', 'Oeu016981.1' => 'oeu', 'Oeu056286.1' => 'oeu', 'Os03g0151800' => 'osa', 'Os08g0413000' => 'osa', 'Os10g0442600' => 'osa', 'Peaxi162Scf00088g00061' => 'pax', 'Peaxi162Scf00089g01628' => 'pax', 'Peaxi162Scf00311g00045' => 'pax', 'Peaxi162Scf00389g00949' => 'pax', 'Peaxi162Scf00701g00515' => 'pax', 'Peaxi162Scf01159g00110' => 'pax', 'Peaxi162Scf03841g00002' => 'pax', 'PGR004G0369' => 'pgr', 'PGR083G1830' => 'pgr', 'PGR142G1733' => 'pgr', 'PGR142G2465' => 'pgr', 'PGSC0003DMG400010454' => 'stu', 'PGSC0003DMG400012003' => 'stu', 'PGSC0003DMG400018104' => 'stu', 'PGSC0003DMG400019676' => 'stu', 'PGSC0003DMG400021556' => 'stu', 'Phvul.007G149366' => 'pvu', 'Phvul.007G149432' => 'pvu', 'Phvul.009G175800' => 'pvu', 'Phvul.011G083800' => 'pvu', 'Potri.006G125500' => 'ptr', 'Potri.012G088200' => 'ptr', 'Potri.015G080600' => 'ptr', 'Potri.016G091600' => 'ptr', 'Potri.017G108200' => 'ptr', 'Pp3c13_4290' => 'ppa', 'Pp3c15_10770' => 'ppa', 'Pp3c26_8300' => 'ppa', 'Pp3c3_6980' => 'ppa', 'Pp3c4_26860' => 'ppa', 'Pp3c7_25950' => 'ppa', 'Pp3c9_3020' => 'ppa', 'PRCOL_00000863' => 'pco', 'PRCOL_00004109' => 'pco', 'Prupe.4G237600' => 'ppe', 'Prupe.6G107800' => 'ppe', 'Prupe.6G233700' => 'ppe', 'Psat0s2621g0040' => 'psa', 'Psat5g280600' => 'psa', 'Psat6g073160' => 'psa', 'PSO017G4150' => 'pso', 'PSO063G2537' => 'pso', 'PSO339G3313' => 'pso', 'PSO801G0113' => 'pso', 'PSO832G0543' => 'pso', 'PSO832G1837' => 'pso', 'PSO832G3026' => 'pso', 'QL01p015943' => 'qlo', 'QL01p015951' => 'qlo', 'QL01p015963' => 'qlo', 'QL02p091180' => 'qlo', 'QL05p042048' => 'qlo', 'QL05p052073' => 'qlo', 'QL05p052843' => 'qlo', 'QL07p043685' => 'qlo', 'QL08p000298' => 'qlo', 'QL10p008753' => 'qlo', 'RcHm_v2.0_Chr3g0470061' => 'rch', 'RcHm_v2.0_Chr4g0421621' => 'rch', 'RcHm_v2.0_Chr6g0259281' => 'rch', 'RcHm_v2.0_Chr6g0259871' => 'rch', 'RcHm_v2.0_Chr7g0193051' => 'rch', 'Rhsim08G0175000' => 'rsi', 'Rhsim13G0098600' => 'rsi', 'Rhsim13G0098700' => 'rsi', 'Sabra06G0099100' => 'sbr', 'Sabra12G0063000' => 'sbr', 'Sabra15G0072400' => 'sbr', 'Sabra15G0104700' => 'sbr', 'Sabra16G0097300' => 'sbr', 'SalBow3G0341' => 'sbo', 'SalBow3G0495' => 'sbo', 'SalBow3G1235' => 'sbo', 'SalBow5G2911' => 'sbo', 'SalBow5G5694' => 'sbo', 'Sc02g0001700' => 'sci', 'Sc20g0005410' => 'sci', 'Sc20g0005440' => 'sci', 'Sed0003418' => 'sed', 'Sed0007648' => 'sed', 'Sed0009250' => 'sed', 'Sed0013960' => 'sed', 'Sed0027845' => 'sed', 'SEGI_01673' => 'sgi', 'SEGI_02788' => 'sgi', 'SEGI_07061' => 'sgi', 'SEGI_09723' => 'sgi', 'SEGI_10853' => 'sgi', 'SEGI_20551' => 'sgi', 'SEGI_20763' => 'sgi', 'SEGI_21910' => 'sgi', 'SEGI_25498' => 'sgi', 'SEGI_32518' => 'sgi', 'SEGI_39741' => 'sgi', 'SGA_v2.0_scaffold116G32211' => 'sas', 'SGA_v2.0_scaffold127G34040' => 'sas', 'SGA_v2.0_scaffold40G15504' => 'sas', 'SGA_v2.0_scaffold889G53696' => 'sas', 'SHI12473' => 'shi', 'SMO118G0023' => 'smo', 'SMO169G0030' => 'smo', 'Solyc03g112590.4' => 'sly', 'Solyc06g074980.3' => 'sly', 'Solyc09g008070.4' => 'sly', 'Solyc10g084050.2' => 'sly', 'Solyc11g069720.2' => 'sly', 'Sopen03g031660' => 'spe', 'Sopen06g031380' => 'spe', 'Sopen09g002870' => 'spe', 'Sopen10g033500' => 'spe', 'Sopen11g028560' => 'spe', 'Sp3g08170' => 'spa', 'Sp5g09110' => 'spa', 'Sp6g39400' => 'spa', 'TAR369G0240' => 'tar', 'TAR445G0001' => 'tar', 'TAR622G1132' => 'tar', 'TAR623G1281' => 'tar', 'TAR629G2012' => 'tar', 'TAR633G2764' => 'tar', 'TAR636G1007' => 'tar', 'THA.LOC104816345' => 'tha', 'THA.LOC104823234' => 'tha', 'THA.LOC104823479' => 'tha', 'THA.LOC104826910' => 'tha', 'Thecc.05G064700' => 'tca', 'Thecc.09G347800' => 'tca', 'Thhalv10000577m.g' => 'esa', 'Thhalv10012714m.g' => 'esa', 'Thhalv10020085m.g' => 'esa', 'TPR.G11434' => 'tpr', 'TPR.G11534' => 'tpr', 'TPR.G20216' => 'tpr', 'TPR.G25422' => 'tpr', 'TPR.G9362' => 'tpr', 'TWI09G1387' => 'twi', 'TWI53G1848' => 'twi', 'TWI74G0493' => 'twi', 'TWI75G1154' => 'twi', 'TWI77G0991' => 'twi', 'unitig_22.g6655' => 'ugi', 'unitig_27.g25052' => 'ugi', 'unitig_699.g19190' => 'ugi', 'unitig_8.g3296' => 'ugi', 'vmacro19417' => 'vma', 'VMungo0720G2390' => 'vmu', 'VMungo1127G0365' => 'vmu', 'VMungo1309G1584' => 'vmu', 'Zm00001eb004170' => 'zma', 'Zm00001eb047170' => 'zma', 'Zm00001eb178950' => 'zma', 'Zm00001eb222570' => 'zma', 'Zm00001eb403110' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'ORTHO05D001255', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D001255' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'ORTHO05D001255', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '446', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false, 'has_blast_db' => true ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'ORTHO05D001255' ) ), 'genes' => array( 'A01p42100' => 'bna', 'A03p01140' => 'bna', 'A03p35810' => 'bna', 'A05p39210' => 'bna', 'A07p21450' => 'bna', 'A09p46200' => 'bna', 'Aa31LG10G8420' => 'aar', 'Aa31LG3G2300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3033' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3050' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3060' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1131' => 'aag', 'Actinidia13073' => 'ach', 'Actinidia24129' => 'ach', 'Actinidia28900' => 'ach', 'Ah.08g211660' => 'amhyb', 'Ah.14g085860' => 'amhyb', 'AL3G21070' => 'aly', 'AL5G34110' => 'aly', 'AL6G12670' => 'aly', 'Aqoxy2G01785' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0N72S3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S6Q2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87HTU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8F2DT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSV57K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7JGCR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF2L6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R086A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UBK6DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WAKG1R' => 'arhy', 'AT3G09840' => 'ath', 'AT3G53230' => 'ath', 'AT5G03340' => 'ath', 'ATR1132G014' => 'atr', 'ATR1152G092' => 'atr', 'Atru.chr3.3556' => 'acertr', 'Atru.chr8.1826' => 'acertr', 'Atru.chr9.2536' => 'acertr', 'AUR62008175' => 'cqu', 'AUR62026909' => 'cqu', 'AUR62038585' => 'cqu', 'AUR62039867' => 'cqu', 'AUR62040576' => 'cqu', 'AUR62042049' => 'cqu', 'BcaB01g05824' => 'bca', 'BcaB01g05845' => 'bca', 'BcaB02g07800' => 'bca', 'BcaB03g11585' => 'bca', 'BcaB04g21241' => 'bca', 'BcaC01g04249' => 'bca', 'BcaC05g29495' => 'bca', 'BcaC05g29706' => 'bca', 'BcaC07g39682' => 'bca', 'BcaC09g48122' => 'bca', 'BcaNung06804' => 'bca', 'BolC1t05429H' => 'bol', 'BolC3t12701H' => 'bol', 'BolC3t16617H' => 'bol', 'BolC5t34480H' => 'bol', 'BolC6t37291H' => 'bol', 'BolC8t50453H' => 'bol', 'BraA01t04278Z' => 'bra', 'BraA03t09495Z' => 'bra', 'BraA03t12753Z' => 'bra', 'BraA05t22710Z' => 'bra', 'BraA07t29832Z' => 'bra', 'BraA09t40084Z' => 'bra', 'C03p01450' => 'bna', 'C03p43460' => 'bna', 'C05p58260' => 'bna', 'C06p21060' => 'bna', 'C08p28450' => 'bna', 'CAN.G1166.32' => 'can', 'CAN.G1169.14' => 'can', 'CAN.G1755.4' => 'can', 'CAN.G309.14' => 'can', 'CAN.G900.46' => 'can', 'CANSAT54G1454' => 'cansat', 'CANSAT80G1774' => 'cansat', 'CARHR163070' => 'chi', 'CARHR272090' => 'chi', 'Carub.0003s0893' => 'cru', 'Carub.0005s1976' => 'cru', 'Carub.0006s0215' => 'cru', 'Ca_01389_v3' => 'car', 'Ca_08858_v3' => 'car', 'Ca_11493_v3' => 'car', 'CBR_g8453' => 'cbr', 'Cc01_g10600' => 'ccan', 'Cc02_g15090' => 'ccan', 'Cc04_g12540' => 'ccan', 'Cc06_g04140' => 'ccan', 'Cc06_g17260' => 'ccan', 'CDE02G3027' => 'cde', 'CDE06G0560' => 'cde', 'CDE06G2269' => 'cde', 'CDE07G1125' => 'cde', 'CDE11G0622' => 'cde', 'Cfa010317' => 'cfa', 'Cfa010348' => 'cfa', 'Cfa017590' => 'cfa', 'Ciclev10011046m.g' => 'ccl', 'Ciclev10013552m.g' => 'ccl', 'Ciclev10018887m.g' => 'ccl', 'Ciclev10024348m.g' => 'ccl', 'Ciclev10027840m.g' => 'ccl', 'CiPaw.09G173400' => 'cil', 'CiPaw.13G118100' => 'cil', 'CiPaw.13G118200' => 'cil', 'ClCG04G009260' => 'cla', 'ClCG06G017170' => 'cla', 'ClCG10G020200' => 'cla', 'COL.COLO4_03885' => 'col', 'COL.COLO4_17360' => 'col', 'COL.COLO4_25876' => 'col', 'COL.COLO4_25881' => 'col', 'COL.COLO4_25891' => 'col', 'COL.COLO4_26975' => 'col', 'COL.COLO4_34704' => 'col', 'Cpa.g.sc153.17' => 'cpa', 'Cpa.g.sc56.23' => 'cpa', 'Cpa.g.sc56.24' => 'cpa', 'Cre06.g269950' => 'cre', 'CsaV3_1G001310' => 'csa', 'CsaV3_3G035900' => 'csa', 'CsaV3_6G039850' => 'csa', 'CSS0008341' => 'camsi', 'CSS0009178' => 'camsi', 'CSS0039212' => 'camsi', 'CSS0041444' => 'camsi', 'DCAR_014993' => 'dca', 'DCAR_016471' => 'dca', 'DCAR_017688' => 'dca', 'DCAR_020824' => 'dca', 'Dinv20622' => 'din', 'Dinv29354' => 'din', 'Dinv34699' => 'din', 'Dinv35778' => 'din', 'Dinv37306' => 'din', 'Duzib093G0198' => 'dzi', 'Duzib106G1759' => 'dzi', 'Duzib128G1076' => 'dzi', 'Duzib150G1429' => 'dzi', 'Duzib170G0362' => 'dzi', 'ECA238G0239' => 'eca', 'ECA248G0147' => 'eca', 'ECA248G2986' => 'eca', 'ECA248G3803' => 'eca', 'EL10Ac7g16618' => 'bvu', 'EL10Ac8g19480' => 'bvu', 'EL10Ac8g19481' => 'bvu', 'Eucgr.B00242' => 'egr', 'Eucgr.K01256' => 'egr', 'Eucgr.K01258' => 'egr', 'FAN02G4387' => 'fan', 'FAN04G0370' => 'fan', 'FAN05G0474' => 'fan', 'FAN08G0313' => 'fan', 'FAN09G0455' => 'fan', 'FAN13G3025' => 'fan', 'FAN14G0014' => 'fan', 'FAN15G2158' => 'fan', 'FAN18G4379' => 'fan', 'FAN20G0838' => 'fan', 'FAN24G1112' => 'fan', 'FAN27G3163' => 'fan', 'FvH4_2g06940' => 'fve', 'FvH4_2g07260' => 'fve', 'FvH4_4g17680' => 'fve', 'FvH4_5g05770' => 'fve', 'FvH4_6g16220' => 'fve', 'Glyma.03G182800' => 'gma', 'Glyma.04G186000' => 'gma', 'Glyma.06G180000' => 'gma', 'Glyma.10G057100' => 'gma', 'Glyma.11G194900' => 'gma', 'Glyma.12G177100' => 'gma', 'Glyma.13G143600' => 'gma', 'Glyma.13G323600' => 'gma', 'Glyma.19G183400' => 'gma', 'Gohir.A01G140607' => 'ghi', 'Gohir.A04G072300' => 'ghi', 'Gohir.A09G147700' => 'ghi', 'Gohir.A11G324100' => 'ghi', 'Gohir.D01G130600' => 'ghi', 'Gohir.D03G137250' => 'ghi', 'Gohir.D04G110800' => 'ghi', 'Gohir.D09G143300' => 'ghi', 'Gohir.D11G343200' => 'ghi', 'Gorai.002G162100' => 'gra', 'Gorai.003G144300' => 'gra', 'Gorai.003G146600' => 'gra', 'Gorai.006G164800' => 'gra', 'Gorai.007G373300' => 'gra', 'Gorai.009G415000' => 'gra', 'GSVIVG01007689001' => 'vvi', 'GSVIVG01025723001' => 'vvi', 'GSVIVG01031517001' => 'vvi', 'HanXRQChr01g0027621' => 'han', 'HanXRQChr11g0346421' => 'han', 'HanXRQChr11g0350361' => 'han', 'HanXRQChr14g0452581' => 'han', 'HanXRQChr14g0454481' => 'han', 'Haze_02481' => 'cav', 'Haze_14469' => 'cav', 'Haze_20559' => 'cav', 'Haze_23756' => 'cav', 'Haze_26362' => 'cav', 'Hma1.2p1_0046F.1_g026800' => 'hma', 'Hma1.2p1_0569F.1_g180270' => 'hma', 'HPP92_022072' => 'vpl', 'HPP92_022586' => 'vpl', 'Hund12087' => 'sun', 'Hund20292' => 'sun', 'Lalb_Chr02g0155911' => 'lal', 'Lalb_Chr02g0156021' => 'lal', 'Lalb_Chr02g0159421' => 'lal', 'Lalb_Chr06g0171681' => 'lal', 'Lalb_Chr06g0175581' => 'lal', 'Lalb_Chr21g0315001' => 'lal', 'Lalb_Chr25g0289011' => 'lal', 'Lj1A194T70' => 'lonja', 'Lj1A194T72' => 'lonja', 'Lj1g0010086' => 'lja', 'Lj1g0015371' => 'lja', 'Lj2A116T69' => 'lonja', 'Lj3C984T7' => 'lonja', 'Lj3g0009007' => 'lja', 'Lj5g0027153' => 'lja', 'Lsat_1_v5_gn_1_52021' => 'lsa', 'Lsat_1_v5_gn_1_52061' => 'lsa', 'Lsat_1_v5_gn_1_63140' => 'lsa', 'Lsat_1_v5_gn_1_63160' => 'lsa', 'Lsat_1_v5_gn_2_106721' => 'lsa', 'Manes.04G015800' => 'mes', 'Manes.06G107800' => 'mes', 'Manes.08G009500' => 'mes', 'Manes.09G067260' => 'mes', 'Manes.11G150300' => 'mes', 'Mapoly0002s0308' => 'mpo', 'Mapoly0029s0002' => 'mpo', 'Mapoly0096s0020' => 'mpo', 'MBI16_g23862_MAGBIO' => 'mbi', 'MBI18_g14000_MAGBIO' => 'mbi', 'MBI18_g20771_MAGBIO' => 'mbi', 'MBI18_g25265_MAGBIO' => 'mbi', 'MCO01G507' => 'mco', 'MCO01G508' => 'mco', 'MCO05G732' => 'mco', 'MD03G1125700' => 'mdo', 'MD04G1094400' => 'mdo', 'MD06G1170300' => 'mdo', 'MD11G1142500' => 'mdo', 'MD12G1114300' => 'mdo', 'MD14G1175800' => 'mdo', 'Medtr1g063380' => 'mtr', 'Medtr2g095210' => 'mtr', 'Medtr2g095320' => 'mtr', 'Medtr7g101870' => 'mtr', 'MELO3C009349.2' => 'cme', 'MELO3C024461.2' => 'cme', 'MELO3C026279.2' => 'cme', 'Migut.D01983' => 'egut', 'Migut.D02258' => 'egut', 'Migut.J00517' => 'egut', 'Migut.N02574' => 'egut', 'MSTRG.17778' => 'ama', 'MSTRG.18685' => 'ama', 'MSTRG.21099' => 'ama', 'MSTRG.26696' => 'ama', 'Nitab4.5_0000063g0050' => 'nta', 'Nitab4.5_0000101g0430' => 'nta', 'Nitab4.5_0000106g0380' => 'nta', 'Nitab4.5_0001284g0010' => 'nta', 'Nitab4.5_0001802g0010' => 'nta', 'Nitab4.5_0002129g0040' => 'nta', 'Nitab4.5_0002286g0010' => 'nta', 'Nitab4.5_0002632g0090' => 'nta', 'Nitab4.5_0002845g0060' => 'nta', 'Nitab4.5_0006452g0040' => 'nta', 'Nitab4.5_0006989g0020' => 'nta', 'Nitab4.5_0011159g0010' => 'nta', 'Nn2g11571' => 'nnu', 'Nn4g22669' => 'nnu', 'Nn8g40578' => 'nnu', 'Oeu013536.1' => 'oeu', 'Oeu014011.1' => 'oeu', 'Oeu016981.1' => 'oeu', 'Oeu056286.1' => 'oeu', 'Os03g0151800' => 'osa', 'Os08g0413000' => 'osa', 'Os10g0442600' => 'osa', 'Peaxi162Scf00088g00061' => 'pax', 'Peaxi162Scf00089g01628' => 'pax', 'Peaxi162Scf00311g00045' => 'pax', 'Peaxi162Scf00389g00949' => 'pax', 'Peaxi162Scf00701g00515' => 'pax', 'Peaxi162Scf01159g00110' => 'pax', 'Peaxi162Scf03841g00002' => 'pax', 'PGR004G0369' => 'pgr', 'PGR083G1830' => 'pgr', 'PGR142G1733' => 'pgr', 'PGR142G2465' => 'pgr', 'PGSC0003DMG400010454' => 'stu', 'PGSC0003DMG400012003' => 'stu', 'PGSC0003DMG400018104' => 'stu', 'PGSC0003DMG400019676' => 'stu', 'PGSC0003DMG400021556' => 'stu', 'Phvul.007G149366' => 'pvu', 'Phvul.007G149432' => 'pvu', 'Phvul.009G175800' => 'pvu', 'Phvul.011G083800' => 'pvu', 'Potri.006G125500' => 'ptr', 'Potri.012G088200' => 'ptr', 'Potri.015G080600' => 'ptr', 'Potri.016G091600' => 'ptr', 'Potri.017G108200' => 'ptr', 'Pp3c13_4290' => 'ppa', 'Pp3c15_10770' => 'ppa', 'Pp3c26_8300' => 'ppa', 'Pp3c3_6980' => 'ppa', 'Pp3c4_26860' => 'ppa', 'Pp3c7_25950' => 'ppa', 'Pp3c9_3020' => 'ppa', 'PRCOL_00000863' => 'pco', 'PRCOL_00004109' => 'pco', 'Prupe.4G237600' => 'ppe', 'Prupe.6G107800' => 'ppe', 'Prupe.6G233700' => 'ppe', 'Psat0s2621g0040' => 'psa', 'Psat5g280600' => 'psa', 'Psat6g073160' => 'psa', 'PSO017G4150' => 'pso', 'PSO063G2537' => 'pso', 'PSO339G3313' => 'pso', 'PSO801G0113' => 'pso', 'PSO832G0543' => 'pso', 'PSO832G1837' => 'pso', 'PSO832G3026' => 'pso', 'QL01p015943' => 'qlo', 'QL01p015951' => 'qlo', 'QL01p015963' => 'qlo', 'QL02p091180' => 'qlo', 'QL05p042048' => 'qlo', 'QL05p052073' => 'qlo', 'QL05p052843' => 'qlo', 'QL07p043685' => 'qlo', 'QL08p000298' => 'qlo', 'QL10p008753' => 'qlo', 'RcHm_v2.0_Chr3g0470061' => 'rch', 'RcHm_v2.0_Chr4g0421621' => 'rch', 'RcHm_v2.0_Chr6g0259281' => 'rch', 'RcHm_v2.0_Chr6g0259871' => 'rch', 'RcHm_v2.0_Chr7g0193051' => 'rch', 'Rhsim08G0175000' => 'rsi', 'Rhsim13G0098600' => 'rsi', 'Rhsim13G0098700' => 'rsi', 'Sabra06G0099100' => 'sbr', 'Sabra12G0063000' => 'sbr', 'Sabra15G0072400' => 'sbr', 'Sabra15G0104700' => 'sbr', 'Sabra16G0097300' => 'sbr', 'SalBow3G0341' => 'sbo', 'SalBow3G0495' => 'sbo', 'SalBow3G1235' => 'sbo', 'SalBow5G2911' => 'sbo', 'SalBow5G5694' => 'sbo', 'Sc02g0001700' => 'sci', 'Sc20g0005410' => 'sci', 'Sc20g0005440' => 'sci', 'Sed0003418' => 'sed', 'Sed0007648' => 'sed', 'Sed0009250' => 'sed', 'Sed0013960' => 'sed', 'Sed0027845' => 'sed', 'SEGI_01673' => 'sgi', 'SEGI_02788' => 'sgi', 'SEGI_07061' => 'sgi', 'SEGI_09723' => 'sgi', 'SEGI_10853' => 'sgi', 'SEGI_20551' => 'sgi', 'SEGI_20763' => 'sgi', 'SEGI_21910' => 'sgi', 'SEGI_25498' => 'sgi', 'SEGI_32518' => 'sgi', 'SEGI_39741' => 'sgi', 'SGA_v2.0_scaffold116G32211' => 'sas', 'SGA_v2.0_scaffold127G34040' => 'sas', 'SGA_v2.0_scaffold40G15504' => 'sas', 'SGA_v2.0_scaffold889G53696' => 'sas', 'SHI12473' => 'shi', 'SMO118G0023' => 'smo', 'SMO169G0030' => 'smo', 'Solyc03g112590.4' => 'sly', 'Solyc06g074980.3' => 'sly', 'Solyc09g008070.4' => 'sly', 'Solyc10g084050.2' => 'sly', 'Solyc11g069720.2' => 'sly', 'Sopen03g031660' => 'spe', 'Sopen06g031380' => 'spe', 'Sopen09g002870' => 'spe', 'Sopen10g033500' => 'spe', 'Sopen11g028560' => 'spe', 'Sp3g08170' => 'spa', 'Sp5g09110' => 'spa', 'Sp6g39400' => 'spa', 'TAR369G0240' => 'tar', 'TAR445G0001' => 'tar', 'TAR622G1132' => 'tar', 'TAR623G1281' => 'tar', 'TAR629G2012' => 'tar', 'TAR633G2764' => 'tar', 'TAR636G1007' => 'tar', 'THA.LOC104816345' => 'tha', 'THA.LOC104823234' => 'tha', 'THA.LOC104823479' => 'tha', 'THA.LOC104826910' => 'tha', 'Thecc.05G064700' => 'tca', 'Thecc.09G347800' => 'tca', 'Thhalv10000577m.g' => 'esa', 'Thhalv10012714m.g' => 'esa', 'Thhalv10020085m.g' => 'esa', 'TPR.G11434' => 'tpr', 'TPR.G11534' => 'tpr', 'TPR.G20216' => 'tpr', 'TPR.G25422' => 'tpr', 'TPR.G9362' => 'tpr', 'TWI09G1387' => 'twi', 'TWI53G1848' => 'twi', 'TWI74G0493' => 'twi', 'TWI75G1154' => 'twi', 'TWI77G0991' => 'twi', 'unitig_22.g6655' => 'ugi', 'unitig_27.g25052' => 'ugi', 'unitig_699.g19190' => 'ugi', 'unitig_8.g3296' => 'ugi', 'vmacro19417' => 'vma', 'VMungo0720G2390' => 'vmu', 'VMungo1127G0365' => 'vmu', 'VMungo1309G1584' => 'vmu', 'Zm00001eb004170' => 'zma', 'Zm00001eb047170' => 'zma', 'Zm00001eb178950' => 'zma', 'Zm00001eb222570' => 'zma', 'Zm00001eb403110' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'ORTHO05D001255' $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D001255' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'ORTHO05D001255' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'ORTHO05D001255' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151