Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A08p05330 Brassica napus
Aa31LG10G5650 Aethionema arabicum
Aa31LG10G5660 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_368.3370 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_368.3373 Anthoceros agrestis
Ah.13g073490 Amaranthus hybridus
AL1G54570 Arabidopsis lyrata
Aqoxy3G02138 Aquilegia oxysepala
Aqoxy5G00403 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.03ZR4A Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.0F06NC Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.47H85H Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.5492A7 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.5WGS6V Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.6K85L9 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.HW1IVJ Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.Q9SWB6 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.T9R8PC Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.V1M046 Arachis hypogaea
AT1G48050 Arabidopsis thaliana
ATR0049G077 Amborella trichopoda
Atru.chr5.309 Acer truncatum
AUR62004221 Chenopodium quinoa
AUR62013627 Chenopodium quinoa
BcaB04g17469 Brassica carinata
BcaC07g37180 Brassica carinata
BolC8t47375H Brassica oleracea
BraSC267t45947Z Brassica rapa
C08p05620 Brassica napus
CAN.G205.22 Capsicum annuum
CAN.G279.6 Capsicum annuum
CAN.G388.13 Capsicum annuum
CAN.G388.14 Capsicum annuum
CAN.G594.7 Capsicum annuum
CANSAT56G1200 Cannabis sativa
CANSAT56G4533 Cannabis sativa
CARHR037700 Cardamine hirsuta
Carub.0001s3716 Capsella rubella
Carub.0004s0917 Capsella rubella
Ca_19886_v3 Cicer arietinum L.
Ca_27059_v3 Cicer arietinum L.
CBR_g30081 Chara braunii
Cc02_g36700 Coffea canephora
CDE04G3156 Ceratophyllum demersum
Cfa001721 Carpinus fangiana
Cfa025796 Carpinus fangiana
Ciclev10019016m.g Citrus clementina
CiPaw.01G262000 Carya illinoinensis
ClCG05G002220 Citrullus lanatus
COL.COLO4_07018 Corchorus olitorius
COL.COLO4_12548 Corchorus olitorius
Cpa.g.sc18.115 Carica papaya
Cre10.g423800 Chlamydomonas reinhardtii
CsaV3_3G009680 Cucumis sativus L.
CSS0036976 Camellia sinensis var. sinensis
DCAR_015907 Daucus carota
Dinv32377 Davidia involucrata
ECA234G1700 Erigeron canadensis
EL10Ac1g00900 Beta vulgaris
Eucgr.E01418 Eucalyptus grandis
Eucgr.E01421 Eucalyptus grandis
Eucgr.I00725 Eucalyptus grandis
Eucgr.L02075 Eucalyptus grandis
FAN01G0628 Fragaria x ananassa
FAN03G1897 Fragaria x ananassa
FAN06G1787 Fragaria x ananassa
FAN06G3319 Fragaria x ananassa
FAN10G1483 Fragaria x ananassa
FAN10G2369 Fragaria x ananassa
FvH4_7g11900 Fragaria vesca
Glyma.01G142851 Glycine max
Glyma.05G125700 Glycine max
Glyma.06G243934 Glycine max
Glyma.06G243967 Glycine max
Glyma.06G244302 Glycine max
Glyma.17G005802 Glycine max
Gohir.A11G080700 Gossypium hirsutum
Gohir.D11G085300 Gossypium hirsutum
Gorai.007G091100 Gossypium raimondii
GSVIVG01027609001 Vitis vinifera
GSVIVG01027610001 Vitis vinifera
HanXRQChr16g0520161 Helianthus annuus
Haze_16815 Corylus avellana
Hma1.2p1_0086F.1_g044870 Hydrangea macrophylla
Hma1.2p1_0086F.1_g044880 Hydrangea macrophylla
Hma1.2p1_0170F.1_g075250 Hydrangea macrophylla
Hma1.2p1_0701F.1_g205850 Hydrangea macrophylla
HPP92_027818 Vanilla planifolia
Hund27347 Selenicereus undatus
Lalb_Chr12g0208261 Lupinus albus
Lalb_Chr13g0291731 Lupinus albus
Lj3g0013484 Lotus japonicus
Lj7A528T57 Lonicera japonica
Lj9C569T11 Lonicera japonica
Lsat_1_v5_gn_4_43240 Lactuca sativa
Manes.01G265900 Manihot esculenta
Mapoly0129s0012 Marchantia polymorpha
MBI12_g10758_MAGBIO Magnolia biondii
MCO15G158 Micromonas commoda
MD07G1121000 Malus domestica
Medtr4g023560 Medicago truncatula
MELO3C006188.2 Cucumis melo
Migut.B01635 Erythranthe guttata
MSTRG.20748 Avicennia marina
Nitab4.5_0000457g0330 Nicotiana tabacum
Nitab4.5_0005372g0070 Nicotiana tabacum
Nn1g01233 Nelumbo nucifera
Oeu032522.1 Olea europaea
Oeu055487.1 Olea europaea
Os03g0856200 Oryza sativa ssp. japonica
Peaxi162Scf00021g01723 Petunia axillaris
PGR042G0667 Punica granatum
PGR119G1536 Punica granatum
PGSC0003DMG400012761 Solanum tuberosum
Phvul.002G205800 Phaseolus vulgaris
Potri.002G148200 Populus trichocarpa
Potri.014G069700 Populus trichocarpa
Pp3c22_11100 Physcomitrium patens
PRCOL_00002704 Prasinoderma coloniale
Prupe.2G145600 Prunus persica
Psat7g233440 Pisum sativum
PSO478G5008 Papaver somniferum
QL08p052472 Quercus lobata
QL08p052505 Quercus lobata
RcHm_v2.0_Chr1g0350571 Rosa chinensis
RcHm_v2.0_Chr1g0350581 Rosa chinensis
Sabra14G0049400 Salix brachista
Sc02g0002590 Simmondsia chinensis
Sed0020955 Sechium edule
SEGI_20047 Sequoiadendron giganteum
SEGI_29754 Sequoiadendron giganteum
SGA_v2.0_scaffold10G05342 Striga asiatica
SGA_v2.0_scaffold153G37012 Striga asiatica
SGA_v2.0_scaffold172G39032 Striga asiatica
SGA_v2.0_scaffold29G12247 Striga asiatica
SGA_v2.0_scaffold65G22170 Striga asiatica
SHI13523 Sapria himalayana
SHI38094 Sapria himalayana
SHI38095 Sapria himalayana
SHI38995 Sapria himalayana
SHI38996 Sapria himalayana
SMO367G0514 Selaginella moellendorffii
Solyc01g091350.4 Solanum lycopersicum
Solyc01g091430.2 Solanum lycopersicum
Solyc01g091440.4 Solanum lycopersicum
Sopen01g037090 Solanum pennellii
Sp1g35020 Schrenkiella parvula
TAR629G2468 Trochodendron aralioides
THA.LOC104817247 Tarenaya hassleriana
Thecc.01G376200 Theobroma cacao
Thhalv10011351m.g Eutrema salsugineum
TPR.G22633 Trifolium pratense
TPR.G9845 Trifolium pratense
TWI23G0227 Tripterygium wilfordii
unitig_749.g13780 Utricularia gibba
unitig_749.g13781 Utricularia gibba
unitig_749.g13782 Utricularia gibba
vmacro13399 Vaccinium macrocarpon
VMungo0251G1206 Vigna mungo
Zm00001eb064930 Zea mays

User provided reference genes

Program Settings