Gene: Solyc01g091350.4
General Information
Structural Information
- Species Solanum lycopersicum
- Gene Identifier Solyc01g091350.4
- Transcript Identifier Solyc01g091350.4.1
- Gene Type Coding gene
- Location SL4.0ch01 : 77235943-77241685 : negative
Gene Family Information
- ID HOM05D004484
- #Genes/#Species 160/96
- Phylogenetic origin
- ID ORTHO05D005370
- #Genes/#Species 159/96
- Phylogenetic origin
Gene Duplication Information
- Tandem Duplication Tandem duplicate
Labels
Identifiers
- tid Solyc01g091350.4.1
- uniprot A0A3Q7F4I5
- gene_id Solyc01g091350
Descriptions
- Description ATP-dependent DNA helicase 2 subunit KU80 (AHRD V3.3 *** A0A2G3AH96_CAPAN)
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006303 | IBA IEA | GOA Database | double-strand break repair via nonhomologous end joining | |
| GO:0006303 | IEA | InterPro | double-strand break repair via nonhomologous end joining | |
| GO:0000723 | IBA IEA | GOA Database | telomere maintenance | |
| GO:0000723 | IEA | InterPro | telomere maintenance | |
| GO:0071480 | IBA | GOA Database | cellular response to gamma radiation | |
| GO:0071481 | IBA | GOA Database | cellular response to X-ray | |
| GO:0009408 | ISO | PLAZA Integrative Orthology | response to heat | AT1G48050 |
| GO:0015074 | ISO | PLAZA Integrative Orthology | DNA integration | AT1G48050 |
| GO:0006302 | ISO | PLAZA Integrative Orthology | double-strand break repair | AT1G48050 |
| GO:0032508 | IEA | GOA Database | DNA duplex unwinding | |
| GO:0006310 | IEA | GOA Database | DNA recombination | |
| GO:0006310 | IEA | InterPro | DNA recombination | |
| GO:0006281 | IEA | GOA Database | DNA repair | |
| GO:0006974 | IEA | GOA Database | cellular response to DNA damage stimulus |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003684 | IEA | GOA Database | damaged DNA binding | |
| GO:0003684 | IEA | InterPro | damaged DNA binding | |
| GO:0003678 | IEA | GOA Database | DNA helicase activity | |
| GO:0003678 | IEA | InterPro | DNA helicase activity | |
| GO:0042162 | IBA IEA | GOA Database | telomeric DNA binding | |
| GO:0042162 | IEA | InterPro | telomeric DNA binding | |
| GO:0005524 | IEA | GOA Database | ATP binding | |
| GO:0003690 | IBA | GOA Database | double-stranded DNA binding | |
| GO:0005515 | ISO | PLAZA Integrative Orthology | protein binding | AT1G48050 |
| GO:0003677 | IEA | GOA Database | DNA binding | |
| GO:0003677 | IEA | InterPro | DNA binding | |
| GO:0000166 | IEA | GOA Database | nucleotide binding | |
| GO:0016787 | IEA | GOA Database | hydrolase activity | |
| GO:0004386 | IEA | GOA Database | helicase activity |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0043564 | IBA IEA | GOA Database | Ku70:Ku80 complex | |
| GO:0043564 | IEA | InterPro | Ku70:Ku80 complex | |
| GO:0005634 | IEA | GOA Database | nucleus | |
| GO:0005634 | IEA | InterPro | nucleus |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR006164 | Ku70/Ku80 beta-barrel domain |
| IPR024193 | Ku80 |
| IPR014893 | Ku, C-terminal |
| IPR036465 | von Willebrand factor A-like domain superfamily |
| IPR036494 | Ku, C-terminal domain superfamily |
| IPR005160 | Ku70/Ku80 C-terminal arm |
| IPR005161 | Ku70/Ku80, N-terminal alpha/beta |
| IPR016194 | SPOC-like, C-terminal domain superfamily |
| Mapman id | Description |
|---|---|
| 14.4.1.2 | DNA damage response.nonhomologous end-joining (NHEJ) repair.Ku70-Ku80 helicase complex.component KU80 |