Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A05p24170 Brassica napus
A08p08420 Brassica napus
A09p18800 Brassica napus
A09p18810 Brassica napus
A09p32570 Brassica napus
A09p32580 Brassica napus
Aa31LG2G11200 Aethionema arabicum
Aa31LG6G8200 Aethionema arabicum
Aa31LG9G12070 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_228.4400 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_228.441 Anthoceros agrestis
Actinidia00172 Actinidia chinensis
Actinidia00173 Actinidia chinensis
Actinidia26178 Actinidia chinensis
Actinidia38991 Actinidia chinensis
Actinidia38992 Actinidia chinensis
Ah.05g168630 Amaranthus hybridus
AL1G48420 Arabidopsis lyrata
AL1G67520 Arabidopsis lyrata
Aqoxy5G00852 Aquilegia oxysepala
Aqoxy6G00078 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.1V6YFN Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.A5KHVE Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.AXP3WA Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.CR8E6T Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.LVZ3TI Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.PU5J2F Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.QGX5EX Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.UF24CP Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.Y9RVVK Arachis hypogaea
AT1G33980 Arabidopsis thaliana
AT1G57770 Arabidopsis thaliana
ATR1136G031 Amborella trichopoda
ATR1136G103 Amborella trichopoda
Atru.chr13.2294 Acer truncatum
Atru.chr6.542 Acer truncatum
Atru.chr6.543 Acer truncatum
AUR62003301 Chenopodium quinoa
AUR62016285 Chenopodium quinoa
AUR62022364 Chenopodium quinoa
AUR62027155 Chenopodium quinoa
AUR62034338 Chenopodium quinoa
BcaB03g13685 Brassica carinata
BcaB04g17913 Brassica carinata
BcaB07g31149 Brassica carinata
BcaB07g33017 Brassica carinata
BcaC04g22089 Brassica carinata
BcaC05g27789 Brassica carinata
BcaC08g43827 Brassica carinata
BolC5t32519H Brassica oleracea
BolC6t36348H Brassica oleracea
BolC6t36349H Brassica oleracea
BolC8t47884H Brassica oleracea
BolC9t55280H Brassica oleracea
BraA05t21296Z Brassica rapa
BraA09t37502Z Brassica rapa
BraA09t38799Z Brassica rapa
C05p37840 Brassica napus
C06p12110 Brassica napus
C09p23600 Brassica napus
CAN.G184.51 Capsicum annuum
CAN.G855.15 Capsicum annuum
CANSAT25G1748 Cannabis sativa
CANSAT35G1138 Cannabis sativa
CANSAT54G1136 Cannabis sativa
CARHR033360 Cardamine hirsuta
CARHR054430 Cardamine hirsuta
Carub.0001s3206 Capsella rubella
Carub.0002s0679 Capsella rubella
Ca_00041_v3 Cicer arietinum L.
Ca_05538_v3 Cicer arietinum L.
Ca_13537_v3 Cicer arietinum L.
CBR_g28080 Chara braunii
CBR_g36287 Chara braunii
CBR_g5599 Chara braunii
CBR_g6542 Chara braunii
Cc02_g23310 Coffea canephora
Cc02_g23320 Coffea canephora
CDE05G1946 Ceratophyllum demersum
CDE05G3483 Ceratophyllum demersum
CDE07G1970 Ceratophyllum demersum
Cfa008128 Carpinus fangiana
Cfa023617 Carpinus fangiana
Ciclev10000689m.g Citrus clementina
Ciclev10000901m.g Citrus clementina
Ciclev10002476m.g Citrus clementina
Ciclev10002670m.g Citrus clementina
Ciclev10019695m.g Citrus clementina
Ciclev10023375m.g Citrus clementina
Ciclev10024086m.g Citrus clementina
Ciclev10024224m.g Citrus clementina
CiPaw.03G018900 Carya illinoinensis
CiPaw.05G003800 Carya illinoinensis
CiPaw.06G174800 Carya illinoinensis
CiPaw.06G175000 Carya illinoinensis
ClCG08G000400 Citrullus lanatus
ClCG10G007140 Citrullus lanatus
COL.COLO4_17710 Corchorus olitorius
COL.COLO4_17711 Corchorus olitorius
COL.COLO4_30473 Corchorus olitorius
Cpa.g.sc113.29 Carica papaya
Cpa.g.sc113.30 Carica papaya
Cre09.g407200 Chlamydomonas reinhardtii
Cre12.g488100 Chlamydomonas reinhardtii
Cre16.g674950 Chlamydomonas reinhardtii
CsaV3_3G006460 Cucumis sativus L.
CsaV3_5G040380 Cucumis sativus L.
CSS0001427 Camellia sinensis var. sinensis
CSS0001682 Camellia sinensis var. sinensis
CSS0005042 Camellia sinensis var. sinensis
CSS0013372 Camellia sinensis var. sinensis
CSS0015167 Camellia sinensis var. sinensis
CSS0015638 Camellia sinensis var. sinensis
CSS0019876 Camellia sinensis var. sinensis
CSS0021784 Camellia sinensis var. sinensis
CSS0022582 Camellia sinensis var. sinensis
CSS0027469 Camellia sinensis var. sinensis
CSS0032132 Camellia sinensis var. sinensis
CSS0044870 Camellia sinensis var. sinensis
CSS0045645 Camellia sinensis var. sinensis
CSS0046505 Camellia sinensis var. sinensis
DCAR_001700 Daucus carota
DCAR_006663 Daucus carota
DCAR_029162 Daucus carota
Dinv19424 Davidia involucrata
Dinv29603 Davidia involucrata
Dinv29604 Davidia involucrata
Duzib052G1145 Durio zibethinus
Duzib132G1055 Durio zibethinus
Duzib192G0272 Durio zibethinus
Duzib248G0405 Durio zibethinus
ECA236G4796 Erigeron canadensis
ECA236G4953 Erigeron canadensis
EL10Ac1g01660 Beta vulgaris
EL10Ac6g14763 Beta vulgaris
Eucgr.G00236 Eucalyptus grandis
Eucgr.I02778 Eucalyptus grandis
FAN08G2186 Fragaria x ananassa
FAN13G0664 Fragaria x ananassa
FAN18G1334 Fragaria x ananassa
FAN18G3448 Fragaria x ananassa
FvH4_5g28280 Fragaria vesca
FvH4_5g32510 Fragaria vesca
Glyma.04G257000 Glycine max
Glyma.06G324500 Glycine max
Glyma.07G273600 Glycine max
Glyma.12G165900 Glycine max
Glyma.16G002300 Glycine max
Glyma.17G001302 Glycine max
Gohir.A01G184800 Gossypium hirsutum
Gohir.A03G215600 Gossypium hirsutum
Gohir.A06G188800 Gossypium hirsutum
Gohir.A12G044600 Gossypium hirsutum
Gohir.D01G175700 Gossypium hirsutum
Gohir.D02G237100 Gossypium hirsutum
Gohir.D06G197400 Gossypium hirsutum
Gohir.D11G271033 Gossypium hirsutum
Gohir.D12G043600 Gossypium hirsutum
Gorai.001G243500 Gossypium raimondii
Gorai.002G218000 Gossypium raimondii
Gorai.005G265700 Gossypium raimondii
Gorai.008G045900 Gossypium raimondii
Gorai.010G229700 Gossypium raimondii
GSVIVG01023232001 Vitis vinifera
GSVIVG01023233001 Vitis vinifera
GSVIVG01034834001 Vitis vinifera
GSVIVG01034840001 Vitis vinifera
HanXRQChr03g0067961 Helianthus annuus
HanXRQChr06g0182771 Helianthus annuus
HanXRQChr06g0182781 Helianthus annuus
HanXRQChr09g0249081 Helianthus annuus
Haze_10033 Corylus avellana
Haze_10034 Corylus avellana
Haze_13907 Corylus avellana
Hma1.2p1_0633F.1_g192740 Hydrangea macrophylla
Hma1.2p1_0884F.1_g232370 Hydrangea macrophylla
Hma1.2p1_0884F.1_g232380 Hydrangea macrophylla
Hma1.2p1_0884F.1_g232390 Hydrangea macrophylla
HPP92_004463 Vanilla planifolia
HPP92_004491 Vanilla planifolia
HPP92_012687 Vanilla planifolia
HPP92_012700 Vanilla planifolia
Hund17550 Selenicereus undatus
Hund19648 Selenicereus undatus
Lalb_Chr07g0176781 Lupinus albus
Lalb_Chr15g0090791 Lupinus albus
Lalb_Chr18g0061071 Lupinus albus
Lj3g0019264 Lotus japonicus
Lj4g0003814 Lotus japonicus
Lj5C267G12 Lonicera japonica
Lj5C270G4 Lonicera japonica
Lj6g0013339 Lotus japonicus
Lj9A298T75 Lonicera japonica
Lsat_1_v5_gn_1_48220 Lactuca sativa
Lsat_1_v5_gn_7_76760 Lactuca sativa
Lsat_1_v5_gn_7_76780 Lactuca sativa
Lsat_1_v5_gn_9_119700 Lactuca sativa
Manes.07G025600 Manihot esculenta
Manes.07G025700 Manihot esculenta
Manes.10G116400 Manihot esculenta
Mapoly0005s0048 Marchantia polymorpha
Mapoly0071s0093 Marchantia polymorpha
Mapoly0102s0041 Marchantia polymorpha
MBI03_g01214_MAGBIO Magnolia biondii
MCO01G655 Micromonas commoda
MCO01G763 Micromonas commoda
MCO06G043 Micromonas commoda
MCO12G341 Micromonas commoda
MCO16G032 Micromonas commoda
MCO16G681 Micromonas commoda
MD08G1216600 Malus domestica
MD08G1243700 Malus domestica
MD08G1243800 Malus domestica
MD15G1403800 Malus domestica
MD15G1438000 Malus domestica
Medtr2g005600 Medicago truncatula
Medtr3g005510 Medicago truncatula
Medtr4g134780 Medicago truncatula
MELO3C016495.2 Cucumis melo
MELO3C022210.2 Cucumis melo
Migut.B00679 Erythranthe guttata
Migut.B00752 Erythranthe guttata
Migut.B00762 Erythranthe guttata
Migut.N00848 Erythranthe guttata
MSTRG.16485 Avicennia marina
MSTRG.27868 Avicennia marina
Nitab4.5_0000121g0180 Nicotiana tabacum
Nitab4.5_0000667g0010 Nicotiana tabacum
Nitab4.5_0000787g0020 Nicotiana tabacum
Nitab4.5_0001144g0040 Nicotiana tabacum
Nitab4.5_0005169g0060 Nicotiana tabacum
Nitab4.5_0008269g0010 Nicotiana tabacum
Nitab4.5_0022329g0010 Nicotiana tabacum
Nn5g27484 Nelumbo nucifera
Nn5g27486 Nelumbo nucifera
Nn5g27503 Nelumbo nucifera
Oeu030852.1 Olea europaea
Oeu043625.3 Olea europaea
Oeu043626.1 Olea europaea
Oeu045913.1 Olea europaea
Oeu056804.1 Olea europaea
Os03g0841900 Oryza sativa ssp. japonica
Os04g0440100 Oryza sativa ssp. japonica
Peaxi162Scf00011g01537 Petunia axillaris
Peaxi162Scf00150g01711 Petunia axillaris
Peaxi162Scf00152g01537 Petunia axillaris
Peaxi162Scf00152g01538 Petunia axillaris
PGR042G0783 Punica granatum
PGR042G1265 Punica granatum
PGR042G1417 Punica granatum
PGSC0003DMG400024884 Solanum tuberosum
PGSC0003DMG400025098 Solanum tuberosum
Phvul.003G075100 Phaseolus vulgaris
Phvul.005G000800 Phaseolus vulgaris
Phvul.006G219800 Phaseolus vulgaris
Potri.003G005700 Populus trichocarpa
Potri.003G005800 Populus trichocarpa
Potri.004G225800 Populus trichocarpa
Potri.013G104501 Populus trichocarpa
Potri.013G104601 Populus trichocarpa
Potri.019G077500 Populus trichocarpa
Pp3c12_4230 Physcomitrium patens
Pp3c2_2830 Physcomitrium patens
Pp3c4_15540 Physcomitrium patens
Pp3c5_6330 Physcomitrium patens
Pp3c8_1640 Physcomitrium patens
PRCOL_00001338 Prasinoderma coloniale
PRCOL_00002421 Prasinoderma coloniale
PRCOL_00004227 Prasinoderma coloniale
PRCOL_00006678 Prasinoderma coloniale
Prupe.1G550000 Prunus persica
Prupe.1G581000 Prunus persica
Prupe.1G581100 Prunus persica
Psat1g000720 Pisum sativum
Psat1g222920 Pisum sativum
Psat4g000880 Pisum sativum
PSO017G6510 Papaver somniferum
PSO170G4495 Papaver somniferum
PSO170G5852 Papaver somniferum
PSO782G2303 Papaver somniferum
QL02p100897 Quercus lobata
QL02p100929 Quercus lobata
QL09p004825 Quercus lobata
QL10p004648 Quercus lobata
RcHm_v2.0_Chr3g0485591 Rosa chinensis
RcHm_v2.0_Chr6g0271031 Rosa chinensis
RcHm_v2.0_Chr7g0220531 Rosa chinensis
RcHm_v2.0_Chr7g0229091 Rosa chinensis
Rhsim05G0113200 Rhododendron simsii
Rhsim11G0121900 Rhododendron simsii
Rhsim11G0122000 Rhododendron simsii
Sabra01G0171500 Salix brachista
Sabra03G0002900 Salix brachista
Sabra19G0088600 Salix brachista
SalBow7G4033 Salvia bowleyana
Sc03g0004940 Simmondsia chinensis
Sc03g0004950 Simmondsia chinensis
Sc12g0008710 Simmondsia chinensis
Sc20g0003300 Simmondsia chinensis
Sed0001549 Sechium edule
Sed0004336 Sechium edule
Sed0012355 Sechium edule
SEGI_02389 Sequoiadendron giganteum
SEGI_13151 Sequoiadendron giganteum
SEGI_14492 Sequoiadendron giganteum
SEGI_33958 Sequoiadendron giganteum
SGA_v2.0_scaffold249G44937 Striga asiatica
SGA_v2.0_scaffold249G44938 Striga asiatica
SGA_v2.0_scaffold42G15901 Striga asiatica
SHI42178 Sapria himalayana
SHI42179 Sapria himalayana
SMO134G0008 Selaginella moellendorffii
SMO244G0002 Selaginella moellendorffii
Solyc01g103420.4 Solanum lycopersicum
Solyc05g010180.4 Solanum lycopersicum
Solyc07g021640.2 Solanum lycopersicum
Solyc10g044450.3 Solanum lycopersicum
Sopen01g045770 Solanum pennellii
Sopen05g005960 Solanum pennellii
Sopen10g009260 Solanum pennellii
Sp1g29240 Schrenkiella parvula
Sp2g05740 Schrenkiella parvula
TAR376G0250 Trochodendron aralioides
TAR376G1141 Trochodendron aralioides
TAR381G0284 Trochodendron aralioides
TAR628G0621 Trochodendron aralioides
TAR633G2580 Trochodendron aralioides
TAR636G0664 Trochodendron aralioides
THA.LOC104806760 Tarenaya hassleriana
THA.LOC104815973 Tarenaya hassleriana
THA.LOC104823701 Tarenaya hassleriana
Thecc.02G016800 Theobroma cacao
Thecc.02G017000 Theobroma cacao
Thecc.06G095900 Theobroma cacao
Thhalv10007455m.g Eutrema salsugineum
Thhalv10023380m.g Eutrema salsugineum
TPR.G20672 Trifolium pratense
TPR.G2074 Trifolium pratense
TPR.G2078 Trifolium pratense
TPR.G25505 Trifolium pratense
TPR.G29252 Trifolium pratense
TPR.G5984 Trifolium pratense
TWI14G0679 Tripterygium wilfordii
TWI23G1244 Tripterygium wilfordii
TWI59G0266 Tripterygium wilfordii
TWI59G1485 Tripterygium wilfordii
unitig_578.g15958 Utricularia gibba
unitig_748.g8352 Utricularia gibba
unitig_8.g4545 Utricularia gibba
vmacro01706 Vaccinium macrocarpon
vmacro01707 Vaccinium macrocarpon
vmacro19858 Vaccinium macrocarpon
VMungo0540G0490 Vigna mungo
VMungo1080G1494 Vigna mungo
VMungo1215G2408 Vigna mungo
Zm00001eb082220 Zea mays
Zm00001eb210950 Zea mays
Zm00001eb422950 Zea mays

User provided reference genes

Program Settings