Gene: AL1G48420

General Information

Structural Information

  • Species Arabidopsis lyrata
  • Gene Identifier AL1G48420
  • Transcript Identifier AL1G48420.t1
  • Gene Type Coding gene
  • Location scaffold_1 : 15846329-15849025 : positive

Gene Family Information

  • ID HOM05D001829
  • #Genes/#Species 358/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • id AL1G48420.v2.1
  • synonym fgenesh2_kg.1__3507__AT1G33980.1
  • synonym 473553
  • pacid 35932298

Descriptions

  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000184
IEA
InterPronuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0048571
ISO
PLAZA Integrative Orthologylong-day photoperiodism AT1G33980
GO:0009611
ISO
PLAZA Integrative Orthologyresponse to wounding AT1G33980
GO:0009863
ISO
PLAZA Integrative Orthologysalicylic acid mediated signaling pathway AT1G33980
GO:0042742
ISO
PLAZA Integrative Orthologydefense response to bacterium AT1G33980
GO:0009867
ISO
PLAZA Integrative Orthologyjasmonic acid mediated signaling pathway AT1G33980

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003676
IEA
InterPronucleic acid binding
GO:0003729
ISO
PLAZA Integrative OrthologymRNA binding AT1G33980

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005730
ISO
PLAZA Integrative Orthologynucleolus AT1G33980

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR005120 UPF3 domain
IPR012677 Nucleotide-binding alpha-beta plait domain superfamily
IPR039722 Nonsense-mediated mRNA decay protein 3
IPR035979 RNA-binding domain superfamily
Mapman id Description
17.3.2.5 Protein biosynthesis.mRNA quality control.NMD Nonsense-Mediated Decay.co-effector protein (UPF3)