Gene: AT1G33980

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT1G33980
  • Transcript Identifier AT1G33980.1
  • Gene Type Coding gene
  • Location Chr1 : 12351719-12354401 : positive

Gene Family Information

  • ID HOM05D001829
  • #Genes/#Species 358/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT1G33980.1
  • symbol UPF3
  • uniprot Q9FVW4

Descriptions

  • Description Smg-4/UPF3 family protein
  • Computational description UPF3; FUNCTIONS IN: nucleotide binding; INVOLVED IN: nuclear-transcribed mRNA catabolic process, nonsense-mediated decay; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), Regulator of nonsense-mediated decay, UPF3 (InterPro:IPR005120); Has 779 Blast hits to 748 proteins in 191 species: Archae - 0; Bacteria - 17; Metazoa - 416; Fungi - 147; Plants - 73; Viruses - 0; Other Eukaryotes - 126 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000184
IEA
GOA Databasenuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0000184
IMP
IBA
Gene Ontologynuclear-transcribed mRNA catabolic process, nonsense-mediated decay1 2
GO:0000184
IEA
InterPronuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0051028
IEA
GOA DatabasemRNA transport
GO:0006952
IEA
GOA Databasedefense response
GO:0045727
IBA
Gene Ontologypositive regulation of translation2
GO:0048571
IMP
Gene Ontologylong-day photoperiodism3
GO:0009867
IMP
Gene Ontologyjasmonic acid mediated signaling pathway3
GO:0009863
IMP
Gene Ontologysalicylic acid mediated signaling pathway3
GO:0009611
IMP
Gene Ontologyresponse to wounding3
GO:0042742
IMP
Gene Ontologydefense response to bacterium4

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003676
IEA
GOA Databasenucleic acid binding
GO:0003676
IEA
InterPronucleic acid binding
GO:0003723
IEA
GOA DatabaseRNA binding
GO:0003729
IDA
GOA DatabasemRNA binding
GO:0003729
HDA
IBA
Gene OntologymRNA binding2 5

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
HDA
ISM
Gene Ontologynucleus6
GO:0005737
IEA
GOA Databasecytoplasm
GO:0005737
IBA
Gene Ontologycytoplasm2
GO:0005730
IEA
GOA Databasenucleolus
GO:0005730
IDA
IBA
Gene Ontologynucleolus2 7

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR005120 UPF3 domain
IPR035979 RNA-binding domain superfamily
IPR012677 Nucleotide-binding alpha-beta plait domain superfamily
IPR039722 Nonsense-mediated mRNA decay protein 3
Mapman id Description
17.3.2.5 Protein biosynthesis.mRNA quality control.NMD Nonsense-Mediated Decay.co-effector protein (UPF3)