Gene: Pp3c4_15540

General Information

Structural Information

  • Species Physcomitrium patens
  • Gene Identifier Pp3c4_15540
  • Transcript Identifier Pp3c4_15540V3.1
  • Gene Type Coding gene
  • Location Chr04 : 10769752-10775764 : positive

Gene Family Information

  • ID HOM05D001829
  • #Genes/#Species 358/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • name Pp3c4_15540V3.1
  • pacid 32920679
  • alias Phpat.004G056600
  • alias Phypa_159550
  • alias Pp1s13_385V6
  • uniprot A0A2K1KNM2

Descriptions

  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000184
IBA
IEA
GOA Databasenuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0000184
IEA
InterPronuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0045727
IBA
GOA Databasepositive regulation of translation
GO:0048571
ISO
PLAZA Integrative Orthologylong-day photoperiodism AT1G33980
GO:0009611
ISO
PLAZA Integrative Orthologyresponse to wounding AT1G33980
GO:0009863
ISO
PLAZA Integrative Orthologysalicylic acid mediated signaling pathway AT1G33980
GO:0042742
ISO
PLAZA Integrative Orthologydefense response to bacterium AT1G33980
GO:0009867
ISO
PLAZA Integrative Orthologyjasmonic acid mediated signaling pathway AT1G33980

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003676
IEA
GOA Databasenucleic acid binding
GO:0003676
IEA
InterPronucleic acid binding
GO:0003729
IBA
GOA DatabasemRNA binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus
GO:0005730
IBA
GOA Databasenucleolus
GO:0005737
IBA
GOA Databasecytoplasm

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR005120 UPF3 domain
IPR012677 Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 RNA-binding domain superfamily
IPR039722 Nonsense-mediated mRNA decay protein 3
Mapman id Description
17.3.2.5 Protein biosynthesis.mRNA quality control.NMD Nonsense-Mediated Decay.co-effector protein (UPF3)