Gene: Solyc01g103420.4

General Information

Structural Information

  • Species Solanum lycopersicum
  • Gene Identifier Solyc01g103420.4
  • Transcript Identifier Solyc01g103420.4.1
  • Gene Type Coding gene
  • Location SL4.0ch01 : 84313563-84324834 : positive

Gene Family Information

  • ID HOM05D001829
  • #Genes/#Species 358/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Solyc01g103420.4.1
  • uniprot A0A3Q7EQ34
  • gene_id Solyc01g103420

Descriptions

  • Description Regulator of nonsense transcripts UPF3 (AHRD V3.3 *** A0A2I0X275_9ASPA)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000184
IBA
IEA
GOA Databasenuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0000184
IEA
InterPronuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0045727
IBA
GOA Databasepositive regulation of translation

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003676
IEA
GOA Databasenucleic acid binding
GO:0003676
IEA
InterPronucleic acid binding
GO:0003729
IBA
GOA DatabasemRNA binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus
GO:0005730
IBA
GOA Databasenucleolus
GO:0005737
IBA
GOA Databasecytoplasm

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR039722 Nonsense-mediated mRNA decay protein 3
IPR005120 UPF3 domain
IPR035979 RNA-binding domain superfamily
IPR012677 Nucleotide-binding alpha-beta plait domain superfamily
Mapman id Description
17.3.2.5 Protein biosynthesis.mRNA quality control.NMD Nonsense-Mediated Decay.co-effector protein (UPF3)