Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro02172 Vaccinium macrocarpon HOM05D006129 ORTHO05D007446 0.0e+00 1545.4 778 100.0
Rhsim11G0169300 Rhododendron simsii HOM05D006129 ORTHO05D007446 0.0e+00 1284.2 791 83.3
CSS0048591 Camellia sinensis var. sinensis HOM05D006129 ORTHO05D007446 0.0e+00 1147.9 777 75.0
CSS0025307 Camellia sinensis var. sinensis HOM05D006129 ORTHO05D007446 0.0e+00 1146.0 777 74.9
Dinv42121 Davidia involucrata HOM05D006129 ORTHO05D007446 0.0e+00 1119.0 787 72.8
GSVIVG01031785001 Vitis vinifera HOM05D006129 ORTHO05D007446 1.8e-310 1068.9 769 68.9
QL11p038411 Quercus lobata HOM05D006129 ORTHO05D007446 1.3e-305 1052.7 785 67.4
Actinidia12976 Actinidia chinensis HOM05D006129 ORTHO05D007446 2.5e-304 1048.5 765 71.8
CiPaw.05G055300 Carya illinoinensis HOM05D006129 ORTHO05D007446 6.9e-302 1040.4 826 65.1
Thecc.02G095400 Theobroma cacao HOM05D006129 ORTHO05D007446 9.0e-302 1040.0 825 64.8
Dinv23594 Davidia involucrata HOM05D006129 ORTHO05D007446 3.4e-301 1038.1 768 69.5
Duzib248G0151 Durio zibethinus HOM05D006129 ORTHO05D007446 7.6e-301 1036.9 767 67.9
Lj5P206T15 Lonicera japonica HOM05D006129 ORTHO05D007446 1.7e-300 1035.8 780 67.6
Haze_01881 Corylus avellana HOM05D006129 ORTHO05D007446 1.0e-297 1026.5 693 71.4
Cfa005424 Carpinus fangiana HOM05D006129 ORTHO05D007446 3.9e-297 1024.6 709 70.1
TWI79G0519 Tripterygium wilfordii HOM05D006129 ORTHO05D007446 2.5e-296 1021.9 768 67.2
TWI31G0609 Tripterygium wilfordii HOM05D006129 ORTHO05D007446 7.6e-293 1010.4 768 66.1
COL.COLO4_11724 Corchorus olitorius HOM05D006129 ORTHO05D007446 1.3e-289 999.6 725 67.9
Atru.BG.82.p Acer truncatum HOM05D006129 ORTHO05D007446 4.3e-288 994.6 658 72.0
Nn4g23272 Nelumbo nucifera HOM05D006129 ORTHO05D007446 4.3e-288 994.6 716 68.3
Cpa.g.sc62.53 Carica papaya HOM05D006129 ORTHO05D007446 7.4e-288 993.8 694 69.7
MD10G1089000 Malus domestica HOM05D006129 ORTHO05D007446 2.8e-287 991.9 802 64.0
RcHm_v2.0_Chr6g0259211 Rosa chinensis HOM05D006129 ORTHO05D007446 4.1e-286 988.0 767 64.3
CANSAT25G2181 Cannabis sativa HOM05D006129 ORTHO05D007446 5.3e-286 987.6 776 62.0
DCAR_003623 Daucus carota HOM05D006129 ORTHO05D007446 8.5e-284 980.3 727 66.9
FAN27G0179 Fragaria x ananassa HOM05D006129 ORTHO05D007446 1.4e-283 979.5 777 62.9
Manes.17G094600 Manihot esculenta HOM05D006129 ORTHO05D007446 1.9e-283 979.2 781 64.1
FvH4_2g06900 Fragaria vesca HOM05D006129 ORTHO05D007446 2.3e-281 972.2 732 64.5
Oeu057674.1 Olea europaea HOM05D006129 ORTHO05D007446 3.9e-281 971.5 767 63.5
Potri.009G106800 Populus trichocarpa HOM05D006129 ORTHO05D007446 6.7e-281 970.7 788 63.2
Ciclev10027854m.g Citrus clementina HOM05D006129 ORTHO05D007446 8.7e-281 970.3 785 62.8
Sc08g0000140 Simmondsia chinensis HOM05D006129 ORTHO05D007446 7.4e-280 967.2 771 64.3
Gohir.D01G006000 Gossypium hirsutum HOM05D006129 ORTHO05D007446 1.6e-279 966.1 791 62.7
MELO3C026699.2 Cucumis melo HOM05D006129 ORTHO05D007446 3.7e-279 964.9 768 63.2
FAN24G2628 Fragaria x ananassa HOM05D006129 ORTHO05D007446 1.8e-278 962.6 748 63.2
ClCG07G001810 Citrullus lanatus HOM05D006129 ORTHO05D007446 2.4e-278 962.2 758 64.9
Gorai.002G007000 Gossypium raimondii HOM05D006129 ORTHO05D007446 3.1e-278 961.8 793 62.4
Gohir.A01G005900 Gossypium hirsutum HOM05D006129 ORTHO05D007446 4.5e-277 958.0 712 66.2
FAN15G2181 Fragaria x ananassa HOM05D006129 ORTHO05D007446 5.9e-277 957.6 751 63.0
TAR371G0476 Trochodendron aralioides HOM05D006129 ORTHO05D007446 1.3e-276 956.4 708 68.8
Lalb_Chr10g0095451 Lupinus albus HOM05D006129 ORTHO05D007446 3.2e-275 951.8 766 61.7
Prupe.8G116000 Prunus persica HOM05D006129 ORTHO05D007446 5.5e-275 951.0 761 63.3
CsaV3_3G028800 Cucumis sativus L. HOM05D006129 ORTHO05D007446 9.4e-275 950.3 714 65.4
Nitab4.5_0001453g0090 Nicotiana tabacum HOM05D006129 ORTHO05D007446 6.1e-274 947.6 814 60.6
Aqoxy3G03484 Aquilegia oxysepala HOM05D006129 ORTHO05D007446 7.9e-274 947.2 793 61.8
Eucgr.L01320 Eucalyptus grandis HOM05D006129 ORTHO05D007446 1.4e-273 946.4 741 65.0
Nitab4.5_0007303g0010 Nicotiana tabacum HOM05D006129 ORTHO05D007446 3.0e-273 945.3 791 61.8
Peaxi162Scf00789g00530 Petunia axillaris HOM05D006129 ORTHO05D007446 3.9e-273 944.9 779 61.9
Sed0004701 Sechium edule HOM05D006129 ORTHO05D007446 5.1e-273 944.5 702 65.8
Lj2g0010354 Lotus japonicus HOM05D006129 ORTHO05D007446 1.7e-271 939.5 753 62.0
Solyc11g066850.3 Solanum lycopersicum HOM05D006129 ORTHO05D007446 4.1e-270 934.9 782 60.2
CAN.G644.34 Capsicum annuum HOM05D006129 ORTHO05D007446 9.1e-270 933.7 706 65.2
PGR042G1055 Punica granatum HOM05D006129 ORTHO05D007446 4.5e-269 931.4 759 62.5
Medtr1g026035 Medicago truncatula HOM05D006129 ORTHO05D007446 2.9e-268 928.7 755 60.0
Glyma.20G009700 Glycine max HOM05D006129 ORTHO05D007446 3.2e-267 925.2 680 64.9
Ca_13480_v3 Cicer arietinum L. HOM05D006129 ORTHO05D007446 5.5e-267 924.5 755 60.9
VMungo0464G0688 Vigna mungo HOM05D006129 ORTHO05D007446 2.7e-266 922.2 749 60.6
Phvul.002G308800 Phaseolus vulgaris HOM05D006129 ORTHO05D007446 6.1e-266 921.0 744 61.4
Lsat_1_v5_gn_5_113460 Lactuca sativa HOM05D006129 ORTHO05D007446 3.9e-265 918.3 813 58.5
HanXRQChr10g0303221 Helianthus annuus HOM05D006129 ORTHO05D007446 5.2e-265 917.9 816 58.0
Glyma.07G178800 Glycine max HOM05D006129 ORTHO05D007446 9.7e-264 913.7 766 59.7
TPR.G26422 Trifolium pratense HOM05D006129 ORTHO05D007446 2.2e-263 912.5 758 59.9
ECA234G4125 Erigeron canadensis HOM05D006129 ORTHO05D007446 2.8e-263 912.1 718 61.1
THA.LOC104807348 Tarenaya hassleriana HOM05D006129 ORTHO05D007446 4.2e-259 898.3 727 61.6
AL3G47590 Arabidopsis lyrata HOM05D006129 ORTHO05D007446 5.5e-259 897.9 751 59.9
Migut.B00306 Erythranthe guttata HOM05D006129 ORTHO05D007446 1.6e-258 896.3 759 58.9
CARHR106180 Cardamine hirsuta HOM05D006129 ORTHO05D007446 2.1e-258 896.0 743 59.9
Sp3g29130 Schrenkiella parvula HOM05D006129 ORTHO05D007446 8.0e-258 894.0 737 60.1
MSTRG.20134 Avicennia marina HOM05D006129 ORTHO05D007446 2.3e-257 892.5 754 59.4
Carub.0003s2972 Capsella rubella HOM05D006129 ORTHO05D007446 3.3e-256 888.6 748 59.6
Thhalv10022548m.g Eutrema salsugineum HOM05D006129 ORTHO05D007446 4.4e-256 888.3 775 58.1
AT2G15820 Arabidopsis thaliana HOM05D006129 ORTHO05D007446 1.8e-254 882.9 779 57.5
A07p04960 Brassica napus HOM05D006129 ORTHO05D007446 2.0e-253 879.4 731 59.9
EL10Ac9g21818 Beta vulgaris HOM05D006129 ORTHO05D007446 3.5e-253 878.6 779 57.6
arahy.Tifrunner.gnm1.ann1.769PPM Arachis hypogaea HOM05D006129 ORTHO05D007446 5.0e-252 874.8 750 60.0
BcaC06g36090 Brassica carinata HOM05D006129 ORTHO05D007446 2.5e-251 872.5 696 60.9
C07p07940 Brassica napus HOM05D006129 ORTHO05D007446 2.5e-251 872.5 696 60.9
BolC7t41212H Brassica oleracea HOM05D006129 ORTHO05D007446 2.5e-251 872.5 696 60.9
Sopen11g026560 Solanum pennellii HOM05D006129 ORTHO05D007446 4.2e-251 871.7 662 64.8
PGSC0003DMG400026525 Solanum tuberosum HOM05D006129 ORTHO05D007446 4.2e-251 871.7 654 64.7
BraA07t28289Z Brassica rapa HOM05D006129 ORTHO05D007446 3.6e-250 868.6 731 59.2
BcaB03g16332 Brassica carinata HOM05D006129 ORTHO05D007446 6.1e-250 867.8 696 61.1
AUR62011424 Chenopodium quinoa HOM05D006129 ORTHO05D007446 4.4e-248 861.7 773 57.1
unitig_744.g24241 Utricularia gibba HOM05D006129 ORTHO05D007446 4.2e-243 845.1 739 56.2
Aa31LG8G13380 Aethionema arabicum HOM05D006129 ORTHO05D007446 6.8e-241 837.8 752 57.0
Ah.01g006750 Amaranthus hybridus HOM05D006129 ORTHO05D007446 3.3e-235 818.9 723 56.6
ATR0665G475 Amborella trichopoda HOM05D006129 ORTHO05D007446 2.8e-234 815.8 698 56.9
FAN20G2787 Fragaria x ananassa HOM05D006129 ORTHO05D007446 4.7e-234 815.1 622 64.6
Zm00001eb251880 Zea mays HOM05D006129 ORTHO05D007446 4.4e-232 808.5 724 55.2
Os02g0702000 Oryza sativa ssp. japonica HOM05D006129 ORTHO05D007446 4.9e-231 805.1 671 57.4
AUR62016636 Chenopodium quinoa HOM05D006129 ORTHO05D007446 2.4e-230 802.7 669 59.5
SGA_v2.0_scaffold58G20604 Striga asiatica HOM05D006129 ORTHO05D007446 2.4e-230 802.7 793 52.8
HPP92_022045 Vanilla planifolia HOM05D006129 ORTHO05D007446 2.3e-225 786.2 661 56.7
Sabra09G0081600 Salix brachista HOM05D006129 ORTHO05D007446 4.0e-225 785.4 563 68.7
TAR629G1168 Trochodendron aralioides HOM05D006129 ORTHO05D007446 2.0e-224 783.1 546 70.3
Medtr0381s0010 Medicago truncatula HOM05D006129 ORTHO05D007446 6.6e-212 741.5 608 59.0
Eucgr.G01504 Eucalyptus grandis HOM05D006129 ORTHO05D007446 1.4e-209 733.8 757 53.5
Eucgr.L00820 Eucalyptus grandis HOM05D006129 ORTHO05D007446 2.7e-181 639.8 516 63.2
SEGI_31419 Sequoiadendron giganteum HOM05D006129 ORTHO05D007446 7.9e-181 638.3 663 48.0
CDE04G1903 Ceratophyllum demersum HOM05D006129 ORTHO05D007446 1.8e-180 637.1 715 48.5
Psat6g001360 Pisum sativum HOM05D006129 ORTHO05D007446 6.1e-165 585.5 755 43.7
Hund00318 Selenicereus undatus HOM05D006129 ORTHO05D007446 4.8e-154 549.3 420 63.1
Cc02_g18440 Coffea canephora HOM05D006129 ORTHO05D007446 2.9e-151 540.0 466 58.2
Atru.chr5.2887 Acer truncatum HOM05D006129 ORTHO05D007446 2.8e-125 453.8 527 48.4
TAR371G0992 Trochodendron aralioides HOM05D006129 ORTHO05D007446 1.8e-124 451.1 612 44.3
QL11p038542 Quercus lobata HOM05D006129 ORTHO05D007446 6.2e-109 399.4 304 66.8
Atru.chr5.2823 Acer truncatum HOM05D006129 ORTHO05D007446 2.3e-108 397.5 485 48.2
TAR371G0058 Trochodendron aralioides HOM05D006129 ORTHO05D007446 1.4e-92 345.1 349 55.3
Pp3c25_10050 Physcomitrium patens HOM05D006129 ORTHO05D007446 3.4e-91 340.5 658 31.8
Atru.chr5.2881 Acer truncatum HOM05D006129 ORTHO05D007446 6.9e-84 316.2 308 54.2
Atru.chr5.2826 Acer truncatum HOM05D006129 ORTHO05D007446 2.4e-81 307.8 369 51.5
AagrBONN_evm.TU.Sc2ySwM_344.1734 Anthoceros agrestis HOM05D006129 ORTHO05D007446 6.2e-77 293.1 681 29.7
SMO356G0628 Selaginella moellendorffii HOM05D006129 ORTHO05D007446 1.3e-74 285.4 729 26.6
Mapoly0036s0055 Marchantia polymorpha HOM05D006129 ORTHO05D007446 8.7e-63 246.1 677 26.7
TAR629G1760 Trochodendron aralioides HOM05D006129 ORTHO05D007446 5.1e-55 220.3 233 52.4
AagrBONN_evm.TU.Sc2ySwM_344.5085 Anthoceros agrestis HOM05D006129 ORTHO05D007446 1.3e-53 215.7 692 24.4
arahy.Tifrunner.gnm1.ann1.SUMB0F Arachis hypogaea HOM05D006129 ORTHO05D007446 6.3e-45 186.8 173 59.5
Pp3c16_23700 Physcomitrium patens HOM05D006129 ORTHO05D007446 1.1e-44 186.0 653 24.3
Cc02_g18430 Coffea canephora HOM05D006129 ORTHO05D007446 1.3e-42 179.1 178 53.4
Atru.chr5.2882 Acer truncatum HOM05D006129 ORTHO05D007446 6.5e-34 150.2 198 45.5
QL11p038477 Quercus lobata HOM05D006129 ORTHO05D007446 8.0e-24 116.7 189 42.9
RcHm_v2.0_Chr6g0302241 Rosa chinensis HOM05D006129 ORTHO05D007446 3.6e-16 91.3 65 63.1
Atru.chr5.2820 Acer truncatum HOM05D006129 ORTHO05D007446 3.0e-15 88.2 79 55.7
RcHm_v2.0_Chr1g0376021 Rosa chinensis HOM05D006129 ORTHO05D007446 3.4e-14 84.7 56 67.9
CBR_g8924 Chara braunii HOM05D006129 ORTHO05D007446 4.4e-14 84.3 720 17.9
RcHm_v2.0_Chr2g0152801 Rosa chinensis HOM05D006129 ORTHO05D007446 8.3e-13 80.1 55 69.1
CBR_g19584 Chara braunii HOM05D006129 ORTHO05D007446 7.7e-11 73.6 659 18.1
Eucgr.J00110 Eucalyptus grandis HOM05D000001 ORTHO05D000003 3.3e-09 68.2 371 21.6
Peaxi162Scf00092g00003 Petunia axillaris HOM05D000001 ORTHO05D000003 1.2e-08 66.2 175 29.7
AagrBONN_evm.TU.Sc2ySwM_368.3189 Anthoceros agrestis HOM05D000001 ORTHO05D000003 4.7e-08 64.3 447 23.0
arahy.Tifrunner.gnm1.ann1.CUF5YV Arachis hypogaea HOM05D002479 ORTHO05D002675 6.1e-08 63.9 364 23.1
AagrBONN_evm.TU.Sc2ySwM_228.1156 Anthoceros agrestis HOM05D000001 ORTHO05D000003 8.0e-08 63.5 268 22.0
AagrBONN_evm.TU.Sc2ySwM_362.2733 Anthoceros agrestis HOM05D000001 ORTHO05D000003 8.0e-08 63.5 395 23.0
Lalb_Chr21g0317161 Lupinus albus HOM05D000001 ORTHO05D000003 1.4e-07 62.8 345 20.0
PSO782G2072 Papaver somniferum HOM05D000001 ORTHO05D000003 1.4e-07 62.8 403 20.6
AagrBONN_evm.TU.Sc2ySwM_117.4077 Anthoceros agrestis HOM05D000001 ORTHO05D000003 1.8e-07 62.4 235 23.0
PSO170G2610 Papaver somniferum HOM05D000001 ORTHO05D000003 2.3e-07 62.0 316 21.8
AagrBONN_evm.TU.Sc2ySwM_362.870 Anthoceros agrestis HOM05D000001 ORTHO05D000003 5.2e-07 60.8 324 22.5
TAR626G1324 Trochodendron aralioides HOM05D000001 ORTHO05D000003 5.2e-07 60.8 397 20.7
AagrBONN_evm.TU.Sc2ySwM_362.237 Anthoceros agrestis HOM05D000001 ORTHO05D000003 6.8e-07 60.5 218 24.8
Migut.G01112 Erythranthe guttata HOM05D000001 ORTHO05D000003 8.9e-07 60.1 339 23.3
Migut.G01148 Erythranthe guttata HOM05D000001 ORTHO05D000003 8.9e-07 60.1 339 23.3
AagrBONN_evm.TU.Sc2ySwM_369.112 Anthoceros agrestis HOM05D000001 ORTHO05D000003 1.2e-06 59.7 354 22.9
TPR.G9130 Trifolium pratense HOM05D000300 ORTHO05D000383 1.2e-06 59.7 346 23.1
AagrBONN_evm.TU.Sc2ySwM_368.592 Anthoceros agrestis HOM05D000001 ORTHO05D000003 1.5e-06 59.3 236 25.0
Lsat_1_v5_gn_5_185321 Lactuca sativa HOM05D000001 ORTHO05D000003 2.0e-06 58.9 229 26.6
Lj8P324T45 Lonicera japonica HOM05D000001 ORTHO05D000003 2.6e-06 58.5 247 20.6
AagrBONN_evm.TU.Sc2ySwM_344.4894__4895 Anthoceros agrestis HOM05D000001 ORTHO05D000003 3.4e-06 58.2 238 21.8
GSVIVG01006104001 Vitis vinifera HOM05D000001 ORTHO05D000003 3.4e-06 58.2 334 21.6
AagrBONN_evm.TU.Sc2ySwM_117.3815__3816 Anthoceros agrestis HOM05D000001 ORTHO05D000003 4.4e-06 57.8 347 18.4
Aqoxy1G02530 Aquilegia oxysepala HOM05D000001 ORTHO05D000003 4.4e-06 57.8 303 21.5
Aqoxy1G02533 Aquilegia oxysepala HOM05D000001 ORTHO05D000003 4.4e-06 57.8 303 21.5
Actinidia39730 Actinidia chinensis HOM05D000001 ORTHO05D000003 5.7e-06 57.4 222 23.9
Aa31LG11G1530 Aethionema arabicum HOM05D005764 ORTHO05D006600 5.7e-06 57.4 154 29.2
AagrBONN_evm.TU.Sc2ySwM_228.411 Anthoceros agrestis HOM05D000001 ORTHO05D000003 5.7e-06 57.4 234 23.5
Nitab4.5_0009385g0040 Nicotiana tabacum HOM05D000001 ORTHO05D000003 5.7e-06 57.4 380 18.9
SGA_v2.0_scaffold44G16784 Striga asiatica HOM05D000001 ORTHO05D000003 5.7e-06 57.4 209 25.4
CiPaw.13G152100 Carya illinoinensis HOM05D000001 ORTHO05D000003 7.5e-06 57.0 336 20.5
Thhalv10002816m.g Eutrema salsugineum HOM05D000001 ORTHO05D000003 7.5e-06 57.0 354 22.9
Lsat_1_v5_gn_6_71420 Lactuca sativa HOM05D001779 ORTHO05D001753 7.5e-06 57.0 151 27.8
QL01p017408 Quercus lobata HOM05D000001 ORTHO05D000003 7.5e-06 57.0 236 25.0
SMO364G0400 Selaginella moellendorffii HOM05D000001 ORTHO05D000003 7.5e-06 57.0 258 23.3
GSVIVG01006121001 Vitis vinifera HOM05D000001 ORTHO05D000003 7.5e-06 57.0 334 21.6
CARHR084060 Cardamine hirsuta HOM05D000855 ORTHO05D008530 9.8e-06 56.6 268 21.3
Cfa009843 Carpinus fangiana HOM05D000001 ORTHO05D000003 9.8e-06 56.6 231 22.5


User provided reference genes

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