Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.6K85L9 Arachis hypogaea HOM05D004484 ORTHO05D005370 0.0e+00 1339.7 683 100.0
arahy.Tifrunner.gnm1.ann1.HW1IVJ Arachis hypogaea HOM05D004484 ORTHO05D005370 0.0e+00 1339.7 683 100.0
arahy.Tifrunner.gnm1.ann1.V1M046 Arachis hypogaea HOM05D004484 ORTHO05D005370 0.0e+00 1333.9 683 99.4
arahy.Tifrunner.gnm1.ann1.Q9SWB6 Arachis hypogaea HOM05D004484 ORTHO05D005370 0.0e+00 1322.8 683 98.4
Lalb_Chr13g0291731 Lupinus albus HOM05D004484 ORTHO05D005370 3.3e-311 1071.2 687 79.3
Medtr4g023560 Medicago truncatula HOM05D004484 ORTHO05D005370 2.6e-305 1051.6 686 77.1
Lj3g0013484 Lotus japonicus HOM05D004484 ORTHO05D005370 1.0e-304 1049.7 684 78.1
Ca_19886_v3 Cicer arietinum L. HOM05D004484 ORTHO05D005370 5.5e-303 1043.9 686 77.3
Psat7g233440 Pisum sativum HOM05D004484 ORTHO05D005370 9.3e-303 1043.1 686 76.4
Ca_27059_v3 Cicer arietinum L. HOM05D004484 ORTHO05D005370 2.5e-295 1018.5 686 75.2
Lalb_Chr12g0208261 Lupinus albus HOM05D004484 ORTHO05D005370 2.1e-294 1015.4 687 75.0
Glyma.05G125700 Glycine max HOM05D004484 ORTHO05D005370 1.3e-293 1012.7 688 76.2
Phvul.002G205800 Phaseolus vulgaris HOM05D004484 ORTHO05D005370 1.4e-290 1002.7 683 75.8
Dinv32377 Davidia involucrata HOM05D004484 ORTHO05D005370 2.6e-284 981.9 690 72.0
QL08p052472 Quercus lobata HOM05D004484 ORTHO05D005370 1.7e-283 979.2 687 72.5
VMungo0251G1206 Vigna mungo HOM05D004484 ORTHO05D005370 4.8e-283 977.6 683 73.1
CiPaw.01G262000 Carya illinoinensis HOM05D004484 ORTHO05D005370 9.1e-282 973.4 688 71.1
Prupe.2G145600 Prunus persica HOM05D004484 ORTHO05D005370 4.5e-281 971.1 689 71.8
MD07G1121000 Malus domestica HOM05D004484 ORTHO05D005370 3.6e-278 961.4 691 71.9
Hma1.2p1_0086F.1_g044870 Hydrangea macrophylla HOM05D004484 ORTHO05D005370 1.4e-277 959.5 683 71.3
Haze_16815 Corylus avellana HOM05D004484 ORTHO05D005370 3.0e-277 958.4 744 66.3
Lj7A528T57 Lonicera japonica HOM05D004484 ORTHO05D005370 1.1e-276 956.4 696 70.0
GSVIVG01027610001 Vitis vinifera HOM05D004484 ORTHO05D005370 2.8e-275 951.8 672 71.3
ClCG05G002220 Citrullus lanatus HOM05D004484 ORTHO05D005370 3.7e-275 951.4 686 69.5
TPR.G9845 Trifolium pratense HOM05D004484 ORTHO05D005370 8.2e-275 950.3 717 69.7
Cc02_g36700 Coffea canephora HOM05D004484 ORTHO05D005370 9.1e-274 946.8 687 69.9
Potri.014G069700 Populus trichocarpa HOM05D004484 ORTHO05D005370 2.0e-273 945.7 686 69.5
Nitab4.5_0000457g0330 Nicotiana tabacum HOM05D004484 ORTHO05D005370 1.0e-272 943.3 689 68.8
Sed0020955 Sechium edule HOM05D004484 ORTHO05D005370 5.0e-272 941.0 688 68.8
Eucgr.E01418 Eucalyptus grandis HOM05D004484 ORTHO05D005370 1.1e-271 939.9 687 68.1
TWI23G0227 Tripterygium wilfordii HOM05D004484 ORTHO05D005370 7.2e-271 937.2 687 69.1
Manes.01G265900 Manihot esculenta HOM05D004484 ORTHO05D005370 1.6e-270 936.0 688 68.6
Peaxi162Scf00021g01723 Petunia axillaris HOM05D004484 ORTHO05D005370 3.6e-270 934.9 685 68.2
PSO478G5008 Papaver somniferum HOM05D004484 ORTHO05D005370 1.2e-268 929.9 692 68.1
FAN06G1787 Fragaria x ananassa HOM05D004484 ORTHO05D005370 1.5e-268 929.5 686 67.5
Thecc.01G376200 Theobroma cacao HOM05D004484 ORTHO05D005370 2.6e-268 928.7 688 68.0
FAN10G1483 Fragaria x ananassa HOM05D004484 ORTHO05D005370 3.3e-268 928.3 686 67.3
Oeu055487.1 Olea europaea HOM05D004484 ORTHO05D005370 3.3e-268 928.3 687 67.8
FAN06G3319 Fragaria x ananassa HOM05D004484 ORTHO05D005370 1.7e-267 926.0 686 67.1
Atru.chr5.309 Acer truncatum HOM05D004484 ORTHO05D005370 2.2e-267 925.6 684 68.0
CsaV3_3G009680 Cucumis sativus L. HOM05D004484 ORTHO05D005370 2.8e-267 925.2 687 67.7
CANSAT56G4533 Cannabis sativa HOM05D004484 ORTHO05D005370 6.3e-267 924.1 689 68.4
FAN10G2369 Fragaria x ananassa HOM05D004484 ORTHO05D005370 8.2e-267 923.7 686 67.1
PGSC0003DMG400012761 Solanum tuberosum HOM05D004484 ORTHO05D005370 1.1e-266 923.3 686 67.5
Aqoxy5G00403 Aquilegia oxysepala HOM05D004484 ORTHO05D005370 1.4e-266 922.9 687 69.0
DCAR_015907 Daucus carota HOM05D004484 ORTHO05D005370 1.8e-266 922.5 689 68.1
CAN.G388.13 Capsicum annuum HOM05D004484 ORTHO05D005370 3.1e-266 921.8 682 67.6
CSS0036976 Camellia sinensis var. sinensis HOM05D004484 ORTHO05D005370 9.1e-266 920.2 692 68.9
ECA234G1700 Erigeron canadensis HOM05D004484 ORTHO05D005370 1.6e-265 919.5 686 67.3
FvH4_7g11900 Fragaria vesca HOM05D004484 ORTHO05D005370 2.0e-265 919.1 689 67.1
CANSAT56G1200 Cannabis sativa HOM05D004484 ORTHO05D005370 2.2e-264 915.6 689 67.9
FAN01G0628 Fragaria x ananassa HOM05D004484 ORTHO05D005370 8.5e-264 913.7 689 66.6
MSTRG.20748 Avicennia marina HOM05D004484 ORTHO05D005370 5.5e-263 911.0 687 67.0
MBI12_g10758_MAGBIO Magnolia biondii HOM05D004484 ORTHO05D005370 5.5e-263 911.0 717 66.4
Nn1g01233 Nelumbo nucifera HOM05D004484 ORTHO05D005370 3.6e-262 908.3 684 67.5
Sc02g0002590 Simmondsia chinensis HOM05D004484 ORTHO05D005370 6.1e-262 907.5 673 68.4
Solyc01g091350.4 Solanum lycopersicum HOM05D004484 ORTHO05D005370 1.4e-261 906.4 688 66.1
Sopen01g037090 Solanum pennellii HOM05D004484 ORTHO05D005370 6.8e-261 904.0 688 65.7
Nitab4.5_0005372g0070 Nicotiana tabacum HOM05D004484 ORTHO05D005370 3.4e-260 901.7 699 65.7
Sabra14G0049400 Salix brachista HOM05D004484 ORTHO05D005370 1.3e-259 899.8 702 66.0
HanXRQChr16g0520161 Helianthus annuus HOM05D004484 ORTHO05D005370 2.2e-259 899.0 687 65.8
TAR629G2468 Trochodendron aralioides HOM05D004484 ORTHO05D005370 2.2e-259 899.0 670 69.7
Ciclev10019016m.g Citrus clementina HOM05D004484 ORTHO05D005370 2.4e-258 895.6 688 66.3
EL10Ac1g00900 Beta vulgaris HOM05D004484 ORTHO05D005370 5.4e-258 894.4 708 63.1
PGR042G0667 Punica granatum HOM05D004484 ORTHO05D005370 4.5e-257 891.3 689 65.6
MELO3C006188.2 Cucumis melo HOM05D004484 ORTHO05D005370 6.5e-256 887.5 652 67.9
Migut.B01635 Erythranthe guttata HOM05D004484 ORTHO05D005370 6.5e-256 887.5 686 65.2
Cpa.g.sc18.115 Carica papaya HOM05D004484 ORTHO05D005370 1.1e-255 886.7 687 64.6
Lsat_1_v5_gn_4_43240 Lactuca sativa HOM05D004484 ORTHO05D005370 1.5e-255 886.3 685 65.5
SGA_v2.0_scaffold153G37012 Striga asiatica HOM05D004484 ORTHO05D005370 1.5e-255 886.3 686 65.2
vmacro13399 Vaccinium macrocarpon HOM05D004484 ORTHO05D005370 8.0e-254 880.6 686 65.7
Gohir.A11G080700 Gossypium hirsutum HOM05D004484 ORTHO05D005370 3.5e-249 865.1 688 64.1
Gorai.007G091100 Gossypium raimondii HOM05D004484 ORTHO05D005370 4.5e-249 864.8 688 64.2
AUR62004221 Chenopodium quinoa HOM05D004484 ORTHO05D005370 1.0e-248 863.6 719 61.8
Gohir.D11G085300 Gossypium hirsutum HOM05D004484 ORTHO05D005370 5.0e-248 861.3 688 64.2
Ah.13g073490 Amaranthus hybridus HOM05D004484 ORTHO05D005370 6.4e-243 844.3 713 61.3
FAN03G1897 Fragaria x ananassa HOM05D004484 ORTHO05D005370 2.4e-242 842.4 691 63.4
Cfa001721 Carpinus fangiana HOM05D004484 ORTHO05D005370 5.0e-240 834.7 582 71.5
THA.LOC104817247 Tarenaya hassleriana HOM05D004484 ORTHO05D005370 1.9e-239 832.8 686 63.0
Aqoxy3G02138 Aquilegia oxysepala HOM05D004484 ORTHO05D005370 3.6e-238 828.6 685 61.8
SHI13523 Sapria himalayana HOM05D004484 ORTHO05D005370 9.2e-234 813.9 661 63.5
BcaB04g17469 Brassica carinata HOM05D004484 ORTHO05D005370 2.3e-232 809.3 689 58.1
arahy.Tifrunner.gnm1.ann1.03ZR4A Arachis hypogaea HOM05D004484 ORTHO05D005370 5.0e-232 808.1 675 64.7
Sp1g35020 Schrenkiella parvula HOM05D004484 ORTHO05D005370 8.6e-232 807.4 677 58.8
GSVIVG01027609001 Vitis vinifera HOM05D004484 ORTHO05D005370 2.1e-230 802.7 655 63.2
BraSC267t45947Z Brassica rapa HOM05D004484 ORTHO05D005370 1.1e-229 800.4 684 57.5
AUR62013627 Chenopodium quinoa HOM05D004484 ORTHO05D005370 4.0e-229 798.5 701 59.5
BcaC07g37180 Brassica carinata HOM05D004484 ORTHO05D005370 6.8e-229 797.7 688 57.7
arahy.Tifrunner.gnm1.ann1.5WGS6V Arachis hypogaea HOM05D004484 ORTHO05D005370 3.4e-228 795.4 655 66.1
AT1G48050 Arabidopsis thaliana HOM05D004484 ORTHO05D005370 4.4e-228 795.0 686 57.6
C08p05620 Brassica napus HOM05D004484 ORTHO05D005370 4.4e-228 795.0 684 57.7
BolC8t47375H Brassica oleracea HOM05D004484 ORTHO05D005370 5.8e-228 794.7 684 57.7
Carub.0001s3716 Capsella rubella HOM05D004484 ORTHO05D005370 7.5e-228 794.3 690 57.4
CARHR037700 Cardamine hirsuta HOM05D004484 ORTHO05D005370 7.1e-226 787.7 685 57.5
A08p05330 Brassica napus HOM05D004484 ORTHO05D005370 8.1e-222 774.2 665 57.6
AL1G54570 Arabidopsis lyrata HOM05D004484 ORTHO05D005370 2.3e-221 772.7 672 56.7
arahy.Tifrunner.gnm1.ann1.5492A7 Arachis hypogaea HOM05D004484 ORTHO05D005370 2.0e-220 769.6 682 63.2
arahy.Tifrunner.gnm1.ann1.T9R8PC Arachis hypogaea HOM05D004484 ORTHO05D005370 1.4e-218 763.5 683 62.7
Hund27347 Selenicereus undatus HOM05D004484 ORTHO05D005370 1.6e-217 760.0 603 64.5
Zm00001eb064930 Zea mays HOM05D004484 ORTHO05D005370 2.0e-204 716.5 669 57.2
COL.COLO4_07018 Corchorus olitorius HOM05D004484 ORTHO05D005370 7.6e-204 714.5 545 64.8
HPP92_027818 Vanilla planifolia HOM05D004484 ORTHO05D005370 3.1e-197 692.6 687 53.7
COL.COLO4_12548 Corchorus olitorius HOM05D004484 ORTHO05D005370 4.3e-191 672.2 710 51.8
Potri.002G148200 Populus trichocarpa HOM05D004484 ORTHO05D005370 1.0e-187 661.0 490 69.0
unitig_749.g13780 Utricularia gibba HOM05D004484 ORTHO05D005370 2.4e-181 639.8 571 58.5
Hma1.2p1_0086F.1_g044880 Hydrangea macrophylla HOM05D004484 ORTHO05D005370 2.7e-177 626.3 456 70.2
Thhalv10011351m.g Eutrema salsugineum HOM05D004484 ORTHO05D005370 1.1e-175 620.9 668 50.1
Lj9C569T11 Lonicera japonica HOM05D004484 ORTHO05D005370 7.7e-172 608.2 466 65.7
Aa31LG10G5650 Aethionema arabicum HOM05D004484 ORTHO05D005370 2.9e-171 606.3 583 53.9
Pp3c22_11100 Physcomitrium patens HOM05D004484 ORTHO05D005370 2.9e-171 606.3 692 46.5
ATR0049G077 Amborella trichopoda HOM05D004484 ORTHO05D005370 3.0e-168 596.3 455 64.2
CDE04G3156 Ceratophyllum demersum HOM05D004484 ORTHO05D005370 8.2e-166 588.2 670 49.0
SMO367G0514 Selaginella moellendorffii HOM05D004484 ORTHO05D005370 3.1e-165 586.3 689 46.7
PGR119G1536 Punica granatum HOM05D004484 ORTHO05D005370 2.3e-160 570.1 513 57.7
Mapoly0129s0012 Marchantia polymorpha HOM05D004484 ORTHO05D005370 1.1e-157 561.2 632 46.8
RcHm_v2.0_Chr1g0350581 Rosa chinensis HOM05D004484 ORTHO05D005370 2.1e-153 547.0 382 70.4
AagrBONN_evm.TU.Sc2ySwM_368.3373 Anthoceros agrestis HOM05D004484 ORTHO05D005370 1.7e-139 500.7 691 40.4
CBR_g30081 Chara braunii HOM05D004484 ORTHO05D005370 5.1e-107 392.9 490 43.1
arahy.Tifrunner.gnm1.ann1.47H85H Arachis hypogaea HOM05D004484 ORTHO05D005370 2.6e-103 380.6 335 63.0
RcHm_v2.0_Chr1g0350571 Rosa chinensis HOM05D004484 ORTHO05D005370 1.9e-101 374.4 296 66.2
SHI38996 Sapria himalayana HOM05D004484 ORTHO05D005370 1.2e-79 302.0 228 64.0
SHI38095 Sapria himalayana HOM05D004484 ORTHO05D005370 4.0e-72 276.9 190 69.5
Hma1.2p1_0701F.1_g205850 Hydrangea macrophylla HOM05D004484 ORTHO05D005370 3.4e-71 273.9 268 57.8
SHI38094 Sapria himalayana HOM05D004484 ORTHO05D005370 5.1e-67 260.0 211 63.5
Glyma.01G142851 Glycine max HOM05D004484 ORTHO05D005370 3.8e-62 243.8 164 76.2
Glyma.06G243967 Glycine max HOM05D004484 ORTHO05D005370 6.9e-56 223.0 144 74.3
SEGI_20047 Sequoiadendron giganteum HOM05D004484 ORTHO05D005370 4.5e-47 193.7 221 46.2
Glyma.17G005802 Glycine max HOM05D004484 ORTHO05D005370 7.2e-45 186.4 195 59.0
Carub.0004s0917 Capsella rubella HOM05D004484 ORTHO05D005370 9.7e-42 176.0 252 41.7
MCO15G158 Micromonas commoda HOM05D004484 ORTHO05D005370 1.0e-38 166.0 521 27.8
SHI38995 Sapria himalayana HOM05D004484 ORTHO05D005370 3.8e-38 164.1 126 66.7
Hma1.2p1_0170F.1_g075250 Hydrangea macrophylla HOM05D004484 ORTHO05D005370 5.5e-37 160.2 202 48.0
TPR.G22633 Trifolium pratense HOM05D004484 ORTHO05D005370 9.4e-37 159.5 92 82.6
CAN.G594.7 Capsicum annuum HOM05D004484 ORTHO05D005370 2.6e-34 151.4 108 67.6
QL08p052505 Quercus lobata HOM05D004484 ORTHO05D005370 1.3e-33 149.1 174 48.3
SEGI_29754 Sequoiadendron giganteum HOM05D004484 ORTHO05D005370 2.2e-33 148.3 113 62.8
CAN.G205.22 Capsicum annuum HOM05D004484 ORTHO05D005370 1.6e-31 142.1 96 69.8
Os03g0856200 Oryza sativa ssp. japonica HOM05D004484 ORTHO05D005370 4.7e-28 130.6 94 64.9
SGA_v2.0_scaffold65G22170 Striga asiatica HOM05D004484 ORTHO05D005370 4.7e-28 130.6 236 37.7
Eucgr.I00725 Eucalyptus grandis HOM05D004484 ORTHO05D005370 1.7e-25 122.1 79 70.9
Aa31LG10G5660 Aethionema arabicum HOM05D004484 ORTHO05D005370 2.8e-25 121.3 89 59.6
Glyma.06G243934 Glycine max HOM05D004484 ORTHO05D005370 8.6e-22 109.8 81 67.9
CAN.G279.6 Capsicum annuum HOM05D004484 ORTHO05D005370 4.2e-21 107.5 72 69.4
Glyma.06G244302 Glycine max HOM05D004484 ORTHO05D005370 4.2e-21 107.5 129 50.4
Solyc01g091430.2 Solanum lycopersicum HOM05D004484 ORTHO05D005370 7.2e-21 106.7 95 61.1
CAN.G388.14 Capsicum annuum HOM05D004484 ORTHO05D005370 2.0e-18 98.6 94 52.1
TPR.G9848 Trifolium pratense HOM05D000164 ORTHO05D000096 2.8e-17 94.7 55 83.6
SGA_v2.0_scaffold10G05342 Striga asiatica HOM05D004484 ORTHO05D005370 3.1e-16 91.3 182 34.6
Eucgr.E01421 Eucalyptus grandis HOM05D004484 ORTHO05D005370 1.2e-15 89.4 62 67.7
SGA_v2.0_scaffold172G39032 Striga asiatica HOM05D004484 ORTHO05D005370 1.2e-15 89.4 182 35.2
Solyc01g091440.4 Solanum lycopersicum HOM05D004484 ORTHO05D005370 1.3e-14 85.9 133 42.1
SGA_v2.0_scaffold29G12247 Striga asiatica HOM05D004484 ORTHO05D005370 2.3e-14 85.1 188 34.0
Eucgr.L02075 Eucalyptus grandis HOM05D004484 ORTHO05D005370 4.3e-13 80.9 62 62.9
arahy.Tifrunner.gnm1.ann1.0F06NC Arachis hypogaea HOM05D004484 ORTHO05D005370 3.6e-12 77.8 48 79.2
PRCOL_00002704 Prasinoderma coloniale HOM05D004484 ORTHO05D005370 4.7e-12 77.4 240 31.2
Cre10.g423800 Chlamydomonas reinhardtii HOM05D004484 ORTHO05D005370 2.3e-11 75.1 549 22.2
CAN.G321.48 Capsicum annuum HOM05D001267 ORTHO05D002376 1.3e-09 69.3 59 59.3
Hma1.2p1_1470F.1_g285600 Hydrangea macrophylla HOM05D000467 ORTHO05D011800 3.7e-09 67.8 53 69.8
AagrBONN_evm.TU.Sc2ySwM_368.3370 Anthoceros agrestis HOM05D004484 ORTHO05D005370 3.2e-08 64.7 111 32.4
Oeu032522.1 Olea europaea HOM05D004484 ORTHO05D005370 8.6e-06 56.6 64 48.4


User provided reference genes

Program Settings