Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb064930 Zea mays HOM05D004484 ORTHO05D005370 0.0e+00 1318.5 665 100.0
Nitab4.5_0000457g0330 Nicotiana tabacum HOM05D004484 ORTHO05D005370 7.1e-231 804.3 674 59.5
CAN.G388.13 Capsicum annuum HOM05D004484 ORTHO05D005370 6.2e-227 791.2 673 59.3
Dinv32377 Davidia involucrata HOM05D004484 ORTHO05D005370 1.4e-226 790.0 675 59.6
Nn1g01233 Nelumbo nucifera HOM05D004484 ORTHO05D005370 1.8e-226 789.6 666 59.2
Peaxi162Scf00021g01723 Petunia axillaris HOM05D004484 ORTHO05D005370 2.0e-225 786.2 674 59.5
MBI12_g10758_MAGBIO Magnolia biondii HOM05D004484 ORTHO05D005370 7.6e-225 784.3 707 57.4
Oeu055487.1 Olea europaea HOM05D004484 ORTHO05D005370 1.7e-224 783.1 670 58.4
PGSC0003DMG400012761 Solanum tuberosum HOM05D004484 ORTHO05D005370 2.9e-224 782.3 673 58.7
GSVIVG01027610001 Vitis vinifera HOM05D004484 ORTHO05D005370 6.4e-224 781.2 671 59.6
Cc02_g36700 Coffea canephora HOM05D004484 ORTHO05D005370 3.2e-223 778.9 675 58.5
MD07G1121000 Malus domestica HOM05D004484 ORTHO05D005370 1.6e-222 776.5 664 59.9
Nitab4.5_0005372g0070 Nicotiana tabacum HOM05D004484 ORTHO05D005370 1.6e-222 776.5 701 56.8
PSO478G5008 Papaver somniferum HOM05D004484 ORTHO05D005370 1.6e-222 776.5 672 58.6
Solyc01g091350.4 Solanum lycopersicum HOM05D004484 ORTHO05D005370 2.1e-222 776.2 673 58.4
Sopen01g037090 Solanum pennellii HOM05D004484 ORTHO05D005370 6.0e-222 774.6 672 57.7
Lj7A528T57 Lonicera japonica HOM05D004484 ORTHO05D005370 3.9e-221 771.9 687 58.1
Manes.01G265900 Manihot esculenta HOM05D004484 ORTHO05D005370 6.7e-221 771.2 669 57.7
HanXRQChr16g0520161 Helianthus annuus HOM05D004484 ORTHO05D005370 8.7e-221 770.8 668 57.9
Eucgr.E01418 Eucalyptus grandis HOM05D004484 ORTHO05D005370 1.9e-220 769.6 670 57.5
Potri.014G069700 Populus trichocarpa HOM05D004484 ORTHO05D005370 2.5e-220 769.2 664 58.6
Prupe.2G145600 Prunus persica HOM05D004484 ORTHO05D005370 4.3e-220 768.5 665 57.9
ECA234G1700 Erigeron canadensis HOM05D004484 ORTHO05D005370 5.6e-220 768.1 671 57.2
Aqoxy5G00403 Aquilegia oxysepala HOM05D004484 ORTHO05D005370 2.1e-219 766.1 674 58.2
EL10Ac1g00900 Beta vulgaris HOM05D004484 ORTHO05D005370 1.1e-218 763.8 688 56.1
CiPaw.01G262000 Carya illinoinensis HOM05D004484 ORTHO05D005370 1.1e-218 763.8 667 57.7
Hma1.2p1_0086F.1_g044870 Hydrangea macrophylla HOM05D004484 ORTHO05D005370 9.0e-218 760.8 677 57.6
Atru.chr5.309 Acer truncatum HOM05D004484 ORTHO05D005370 1.2e-217 760.4 671 58.0
MSTRG.20748 Avicennia marina HOM05D004484 ORTHO05D005370 2.0e-217 759.6 665 57.3
Ca_19886_v3 Cicer arietinum L. HOM05D004484 ORTHO05D005370 2.0e-217 759.6 666 58.9
TAR629G2468 Trochodendron aralioides HOM05D004484 ORTHO05D005370 5.8e-217 758.1 654 59.0
ClCG05G002220 Citrullus lanatus HOM05D004484 ORTHO05D005370 1.3e-216 756.9 669 58.0
TWI23G0227 Tripterygium wilfordii HOM05D004484 ORTHO05D005370 1.7e-216 756.5 669 57.7
CSS0036976 Camellia sinensis var. sinensis HOM05D004484 ORTHO05D005370 2.2e-216 756.1 671 59.3
DCAR_015907 Daucus carota HOM05D004484 ORTHO05D005370 3.8e-216 755.4 672 57.0
Medtr4g023560 Medicago truncatula HOM05D004484 ORTHO05D005370 3.8e-216 755.4 664 58.1
Lj3g0013484 Lotus japonicus HOM05D004484 ORTHO05D005370 8.4e-216 754.2 666 58.6
CsaV3_3G009680 Cucumis sativus L. HOM05D004484 ORTHO05D005370 4.2e-215 751.9 675 56.7
Psat7g233440 Pisum sativum HOM05D004484 ORTHO05D005370 5.5e-215 751.5 664 57.8
Sc02g0002590 Simmondsia chinensis HOM05D004484 ORTHO05D005370 5.5e-215 751.5 657 57.7
QL08p052472 Quercus lobata HOM05D004484 ORTHO05D005370 7.1e-215 751.1 671 57.2
Ciclev10019016m.g Citrus clementina HOM05D004484 ORTHO05D005370 9.3e-215 750.7 669 58.0
Sed0020955 Sechium edule HOM05D004484 ORTHO05D005370 2.7e-214 749.2 668 56.9
PGR042G0667 Punica granatum HOM05D004484 ORTHO05D005370 3.0e-213 745.7 675 55.4
Glyma.05G125700 Glycine max HOM05D004484 ORTHO05D005370 3.9e-213 745.3 666 56.5
Lsat_1_v5_gn_4_43240 Lactuca sativa HOM05D004484 ORTHO05D005370 6.7e-213 744.6 670 57.5
FvH4_7g11900 Fragaria vesca HOM05D004484 ORTHO05D005370 1.9e-212 743.0 667 55.5
Migut.B01635 Erythranthe guttata HOM05D004484 ORTHO05D005370 4.3e-212 741.9 671 57.2
CANSAT56G4533 Cannabis sativa HOM05D004484 ORTHO05D005370 5.6e-212 741.5 670 55.8
Ca_27059_v3 Cicer arietinum L. HOM05D004484 ORTHO05D005370 7.4e-212 741.1 666 58.3
MELO3C006188.2 Cucumis melo HOM05D004484 ORTHO05D005370 1.3e-211 740.3 655 57.1
FAN01G0628 Fragaria x ananassa HOM05D004484 ORTHO05D005370 2.8e-211 739.2 667 55.2
SGA_v2.0_scaffold153G37012 Striga asiatica HOM05D004484 ORTHO05D005370 4.8e-211 738.4 673 56.9
Thecc.01G376200 Theobroma cacao HOM05D004484 ORTHO05D005370 2.4e-210 736.1 671 56.9
Lalb_Chr13g0291731 Lupinus albus HOM05D004484 ORTHO05D005370 3.1e-210 735.7 669 56.2
CANSAT56G1200 Cannabis sativa HOM05D004484 ORTHO05D005370 6.9e-210 734.6 670 55.4
FAN10G1483 Fragaria x ananassa HOM05D004484 ORTHO05D005370 6.9e-210 734.6 667 55.2
Ah.13g073490 Amaranthus hybridus HOM05D004484 ORTHO05D005370 2.0e-209 733.0 693 54.8
FAN06G3319 Fragaria x ananassa HOM05D004484 ORTHO05D005370 3.4e-209 732.3 667 54.9
AUR62004221 Chenopodium quinoa HOM05D004484 ORTHO05D005370 4.5e-209 731.9 699 53.9
FAN06G1787 Fragaria x ananassa HOM05D004484 ORTHO05D005370 5.8e-209 731.5 667 54.9
FAN10G2369 Fragaria x ananassa HOM05D004484 ORTHO05D005370 7.6e-209 731.1 667 55.0
Cpa.g.sc18.115 Carica papaya HOM05D004484 ORTHO05D005370 1.0e-208 730.7 671 55.6
vmacro13399 Vaccinium macrocarpon HOM05D004484 ORTHO05D005370 6.5e-208 728.0 672 55.5
arahy.Tifrunner.gnm1.ann1.Q9SWB6 Arachis hypogaea HOM05D004484 ORTHO05D005370 7.1e-207 724.5 668 57.2
Haze_16815 Corylus avellana HOM05D004484 ORTHO05D005370 7.1e-207 724.5 724 51.8
arahy.Tifrunner.gnm1.ann1.6K85L9 Arachis hypogaea HOM05D004484 ORTHO05D005370 9.3e-207 724.2 669 57.2
arahy.Tifrunner.gnm1.ann1.HW1IVJ Arachis hypogaea HOM05D004484 ORTHO05D005370 9.3e-207 724.2 669 57.2
Gohir.A11G080700 Gossypium hirsutum HOM05D004484 ORTHO05D005370 9.3e-207 724.2 673 55.4
Gorai.007G091100 Gossypium raimondii HOM05D004484 ORTHO05D005370 9.3e-207 724.2 671 55.4
Phvul.002G205800 Phaseolus vulgaris HOM05D004484 ORTHO05D005370 1.6e-206 723.4 676 55.5
arahy.Tifrunner.gnm1.ann1.V1M046 Arachis hypogaea HOM05D004484 ORTHO05D005370 7.9e-206 721.1 667 56.8
Gohir.D11G085300 Gossypium hirsutum HOM05D004484 ORTHO05D005370 1.3e-205 720.3 671 55.3
Sabra14G0049400 Salix brachista HOM05D004484 ORTHO05D005370 2.3e-205 719.5 686 54.4
VMungo0251G1206 Vigna mungo HOM05D004484 ORTHO05D005370 1.9e-204 716.5 664 55.4
Aqoxy3G02138 Aquilegia oxysepala HOM05D004484 ORTHO05D005370 2.8e-203 712.6 667 54.6
BraSC267t45947Z Brassica rapa HOM05D004484 ORTHO05D005370 2.2e-200 703.0 664 53.5
Lalb_Chr12g0208261 Lupinus albus HOM05D004484 ORTHO05D005370 2.2e-200 703.0 670 55.1
GSVIVG01027609001 Vitis vinifera HOM05D004484 ORTHO05D005370 8.5e-200 701.0 652 56.4
AL1G54570 Arabidopsis lyrata HOM05D004484 ORTHO05D005370 1.1e-199 700.7 664 52.7
AT1G48050 Arabidopsis thaliana HOM05D004484 ORTHO05D005370 4.2e-199 698.7 665 53.2
C08p05620 Brassica napus HOM05D004484 ORTHO05D005370 2.1e-198 696.4 664 53.2
BolC8t47375H Brassica oleracea HOM05D004484 ORTHO05D005370 2.7e-198 696.0 664 53.2
Carub.0001s3716 Capsella rubella HOM05D004484 ORTHO05D005370 2.7e-198 696.0 665 53.1
BcaC07g37180 Brassica carinata HOM05D004484 ORTHO05D005370 6.1e-198 694.9 665 53.2
BcaB04g17469 Brassica carinata HOM05D004484 ORTHO05D005370 2.3e-197 693.0 665 53.2
THA.LOC104817247 Tarenaya hassleriana HOM05D004484 ORTHO05D005370 8.8e-197 691.0 664 54.7
Sp1g35020 Schrenkiella parvula HOM05D004484 ORTHO05D005370 1.5e-196 690.3 656 52.7
A08p05330 Brassica napus HOM05D004484 ORTHO05D005370 6.3e-195 684.9 656 53.0
HPP92_027818 Vanilla planifolia HOM05D004484 ORTHO05D005370 8.2e-195 684.5 672 53.9
CARHR037700 Cardamine hirsuta HOM05D004484 ORTHO05D005370 9.1e-194 681.0 665 52.0
TPR.G9845 Trifolium pratense HOM05D004484 ORTHO05D005370 1.2e-190 670.6 701 51.4
FAN03G1897 Fragaria x ananassa HOM05D004484 ORTHO05D005370 2.0e-188 663.3 669 52.2
SHI13523 Sapria himalayana HOM05D004484 ORTHO05D005370 2.0e-188 663.3 645 53.6
AUR62013627 Chenopodium quinoa HOM05D004484 ORTHO05D005370 7.7e-185 651.4 688 51.2
Cfa001721 Carpinus fangiana HOM05D004484 ORTHO05D005370 7.2e-183 644.8 586 55.8
Hund27347 Selenicereus undatus HOM05D004484 ORTHO05D005370 1.2e-182 644.0 606 55.0
COL.COLO4_07018 Corchorus olitorius HOM05D004484 ORTHO05D005370 9.7e-172 607.8 505 59.8
unitig_749.g13780 Utricularia gibba HOM05D004484 ORTHO05D005370 1.9e-159 567.0 561 54.4
ATR0049G077 Amborella trichopoda HOM05D004484 ORTHO05D005370 5.5e-159 565.5 445 60.7
arahy.Tifrunner.gnm1.ann1.5WGS6V Arachis hypogaea HOM05D004484 ORTHO05D005370 2.1e-158 563.5 628 49.8
arahy.Tifrunner.gnm1.ann1.03ZR4A Arachis hypogaea HOM05D004484 ORTHO05D005370 4.7e-158 562.4 689 46.9
Pp3c22_11100 Physcomitrium patens HOM05D004484 ORTHO05D005370 6.1e-158 562.0 669 45.4
Potri.002G148200 Populus trichocarpa HOM05D004484 ORTHO05D005370 1.2e-156 557.8 486 58.8
Lj9C569T11 Lonicera japonica HOM05D004484 ORTHO05D005370 3.4e-156 556.2 468 59.8
CDE04G3156 Ceratophyllum demersum HOM05D004484 ORTHO05D005370 2.2e-155 553.5 672 45.4
COL.COLO4_12548 Corchorus olitorius HOM05D004484 ORTHO05D005370 3.7e-155 552.7 694 44.1
Hma1.2p1_0086F.1_g044880 Hydrangea macrophylla HOM05D004484 ORTHO05D005370 1.7e-152 543.9 450 60.7
arahy.Tifrunner.gnm1.ann1.5492A7 Arachis hypogaea HOM05D004484 ORTHO05D005370 1.0e-149 534.6 590 50.5
Mapoly0129s0012 Marchantia polymorpha HOM05D004484 ORTHO05D005370 2.3e-149 533.5 621 45.1
SMO367G0514 Selaginella moellendorffii HOM05D004484 ORTHO05D005370 2.3e-149 533.5 667 43.5
arahy.Tifrunner.gnm1.ann1.T9R8PC Arachis hypogaea HOM05D004484 ORTHO05D005370 2.2e-147 526.9 659 46.4
Aa31LG10G5650 Aethionema arabicum HOM05D004484 ORTHO05D005370 2.9e-147 526.6 577 50.8
Thhalv10011351m.g Eutrema salsugineum HOM05D004484 ORTHO05D005370 1.4e-138 497.7 617 44.6
PGR119G1536 Punica granatum HOM05D004484 ORTHO05D005370 1.1e-135 488.0 501 51.1
AagrBONN_evm.TU.Sc2ySwM_368.3373 Anthoceros agrestis HOM05D004484 ORTHO05D005370 2.0e-132 477.2 662 39.1
RcHm_v2.0_Chr1g0350581 Rosa chinensis HOM05D004484 ORTHO05D005370 1.7e-128 464.2 364 62.1
CBR_g30081 Chara braunii HOM05D004484 ORTHO05D005370 5.6e-111 406.0 471 44.4
SHI38996 Sapria himalayana HOM05D004484 ORTHO05D005370 7.4e-79 299.3 203 70.4
RcHm_v2.0_Chr1g0350571 Rosa chinensis HOM05D004484 ORTHO05D005370 2.3e-72 277.7 290 49.0
SHI38095 Sapria himalayana HOM05D004484 ORTHO05D005370 6.7e-72 276.2 190 69.5
Hma1.2p1_0701F.1_g205850 Hydrangea macrophylla HOM05D004484 ORTHO05D005370 6.3e-70 269.6 268 54.5
Glyma.06G243967 Glycine max HOM05D004484 ORTHO05D005370 3.4e-55 220.7 142 71.8
Glyma.01G142851 Glycine max HOM05D004484 ORTHO05D005370 4.5e-44 183.7 164 57.9
Carub.0004s0917 Capsella rubella HOM05D004484 ORTHO05D005370 7.5e-39 166.4 248 41.5
MCO15G158 Micromonas commoda HOM05D004484 ORTHO05D005370 3.7e-38 164.1 531 27.9
SEGI_29754 Sequoiadendron giganteum HOM05D004484 ORTHO05D005370 1.4e-37 162.2 116 69.0
SHI38094 Sapria himalayana HOM05D004484 ORTHO05D005370 2.4e-37 161.4 198 42.9
Glyma.17G005802 Glycine max HOM05D004484 ORTHO05D005370 5.4e-37 160.2 190 50.0
arahy.Tifrunner.gnm1.ann1.47H85H Arachis hypogaea HOM05D004484 ORTHO05D005370 1.5e-34 152.1 325 34.2
SEGI_20047 Sequoiadendron giganteum HOM05D004484 ORTHO05D005370 2.5e-34 151.4 261 36.4
Hma1.2p1_0170F.1_g075250 Hydrangea macrophylla HOM05D004484 ORTHO05D005370 2.1e-33 148.3 202 44.6
CAN.G594.7 Capsicum annuum HOM05D004484 ORTHO05D005370 1.4e-32 145.6 105 69.5
TPR.G22633 Trifolium pratense HOM05D004484 ORTHO05D005370 2.4e-29 134.8 92 70.7
SGA_v2.0_scaffold65G22170 Striga asiatica HOM05D004484 ORTHO05D005370 3.2e-29 134.4 201 41.8
Os03g0856200 Oryza sativa ssp. japonica HOM05D004484 ORTHO05D005370 2.7e-28 131.3 80 76.2
CAN.G205.22 Capsicum annuum HOM05D004484 ORTHO05D005370 7.8e-28 129.8 89 71.9
SHI38995 Sapria himalayana HOM05D004484 ORTHO05D005370 6.8e-24 116.7 113 50.4
Eucgr.I00725 Eucalyptus grandis HOM05D004484 ORTHO05D005370 5.8e-23 113.6 82 69.5
CAN.G279.6 Capsicum annuum HOM05D004484 ORTHO05D005370 3.3e-18 97.8 72 66.7
Aa31LG10G5660 Aethionema arabicum HOM05D004484 ORTHO05D005370 4.0e-16 90.9 80 51.2
SGA_v2.0_scaffold10G05342 Striga asiatica HOM05D004484 ORTHO05D005370 4.0e-16 90.9 185 36.8
SGA_v2.0_scaffold172G39032 Striga asiatica HOM05D004484 ORTHO05D005370 2.0e-15 88.6 185 36.8
PRCOL_00002704 Prasinoderma coloniale HOM05D004484 ORTHO05D005370 3.4e-15 87.8 262 30.5
Solyc01g091430.2 Solanum lycopersicum HOM05D004484 ORTHO05D005370 9.9e-15 86.3 99 45.5
SGA_v2.0_scaffold29G12247 Striga asiatica HOM05D004484 ORTHO05D005370 1.7e-14 85.5 187 36.4
Solyc01g091440.4 Solanum lycopersicum HOM05D004484 ORTHO05D005370 4.1e-13 80.9 132 37.1
QL08p052505 Quercus lobata HOM05D004484 ORTHO05D005370 5.4e-13 80.5 176 33.0
CAN.G388.14 Capsicum annuum HOM05D004484 ORTHO05D005370 7.8e-12 76.6 74 48.6
CAN.G321.48 Capsicum annuum HOM05D001267 ORTHO05D002376 2.5e-10 71.6 53 67.9
TPR.G9848 Trifolium pratense HOM05D000164 ORTHO05D000096 9.6e-10 69.7 55 58.2
Glyma.06G243934 Glycine max HOM05D004484 ORTHO05D005370 2.8e-09 68.2 78 47.4
Glyma.06G244302 Glycine max HOM05D004484 ORTHO05D005370 1.8e-08 65.5 114 38.6
Cre10.g423800 Chlamydomonas reinhardtii HOM05D004484 ORTHO05D005370 3.1e-08 64.7 520 22.1
AagrBONN_evm.TU.Sc2ySwM_368.3370 Anthoceros agrestis HOM05D004484 ORTHO05D005370 8.9e-08 63.2 111 33.3
Eucgr.E01421 Eucalyptus grandis HOM05D004484 ORTHO05D005370 6.4e-06 57.0 62 46.8


User provided reference genes

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