Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.02G095400 Theobroma cacao HOM05D006129 ORTHO05D007446 0.0e+00 1654.8 824 100.0
Duzib248G0151 Durio zibethinus HOM05D006129 ORTHO05D007446 0.0e+00 1462.2 823 88.2
Gohir.D01G006000 Gossypium hirsutum HOM05D006129 ORTHO05D007446 0.0e+00 1299.3 829 79.9
Gorai.002G007000 Gossypium raimondii HOM05D006129 ORTHO05D007446 0.0e+00 1293.1 828 79.5
COL.COLO4_11724 Corchorus olitorius HOM05D006129 ORTHO05D007446 0.0e+00 1284.2 743 85.6
Gohir.A01G005900 Gossypium hirsutum HOM05D006129 ORTHO05D007446 0.0e+00 1280.0 829 79.0
Dinv42121 Davidia involucrata HOM05D006129 ORTHO05D007446 0.0e+00 1151.0 799 72.0
QL11p038411 Quercus lobata HOM05D006129 ORTHO05D007446 0.0e+00 1137.9 837 69.1
CiPaw.05G055300 Carya illinoinensis HOM05D006129 ORTHO05D007446 0.0e+00 1136.3 838 69.5
GSVIVG01031785001 Vitis vinifera HOM05D006129 ORTHO05D007446 0.0e+00 1132.9 805 70.7
Cpa.g.sc62.53 Carica papaya HOM05D006129 ORTHO05D007446 0.0e+00 1131.3 855 68.8
TWI31G0609 Tripterygium wilfordii HOM05D006129 ORTHO05D007446 0.0e+00 1130.9 793 70.7
TWI79G0519 Tripterygium wilfordii HOM05D006129 ORTHO05D007446 0.0e+00 1118.2 758 73.2
Haze_01881 Corylus avellana HOM05D006129 ORTHO05D007446 0.0e+00 1113.6 805 68.9
Cfa005424 Carpinus fangiana HOM05D006129 ORTHO05D007446 0.0e+00 1110.5 808 68.9
Atru.BG.82.p Acer truncatum HOM05D006129 ORTHO05D007446 0.0e+00 1106.7 660 79.2
CSS0048591 Camellia sinensis var. sinensis HOM05D006129 ORTHO05D007446 0.0e+00 1101.3 835 68.0
CSS0025307 Camellia sinensis var. sinensis HOM05D006129 ORTHO05D007446 0.0e+00 1100.1 833 68.2
Ciclev10027854m.g Citrus clementina HOM05D006129 ORTHO05D007446 0.0e+00 1098.2 774 70.7
Lj5P206T15 Lonicera japonica HOM05D006129 ORTHO05D007446 0.0e+00 1097.8 804 69.3
Manes.17G094600 Manihot esculenta HOM05D006129 ORTHO05D007446 0.0e+00 1096.6 841 66.9
MD10G1089000 Malus domestica HOM05D006129 ORTHO05D007446 0.0e+00 1085.9 832 66.7
CANSAT25G2181 Cannabis sativa HOM05D006129 ORTHO05D007446 0.0e+00 1082.0 826 66.3
RcHm_v2.0_Chr6g0259211 Rosa chinensis HOM05D006129 ORTHO05D007446 0.0e+00 1076.6 823 65.5
Potri.009G106800 Populus trichocarpa HOM05D006129 ORTHO05D007446 0.0e+00 1075.1 828 66.5
Nn4g23272 Nelumbo nucifera HOM05D006129 ORTHO05D007446 1.2e-309 1066.2 840 65.0
ClCG07G001810 Citrullus lanatus HOM05D006129 ORTHO05D007446 2.4e-305 1052.0 799 66.6
FAN27G0179 Fragaria x ananassa HOM05D006129 ORTHO05D007446 9.2e-305 1050.0 763 67.4
FvH4_2g06900 Fragaria vesca HOM05D006129 ORTHO05D007446 1.6e-304 1049.3 742 68.1
MELO3C026699.2 Cucumis melo HOM05D006129 ORTHO05D007446 3.3e-302 1041.6 788 66.8
Dinv23594 Davidia involucrata HOM05D006129 ORTHO05D007446 5.6e-302 1040.8 754 69.9
FAN24G2628 Fragaria x ananassa HOM05D006129 ORTHO05D007446 7.3e-302 1040.4 742 67.5
Prupe.8G116000 Prunus persica HOM05D006129 ORTHO05D007446 2.8e-301 1038.5 794 66.9
vmacro02172 Vaccinium macrocarpon HOM05D006129 ORTHO05D007446 3.1e-300 1035.0 825 64.8
FAN15G2181 Fragaria x ananassa HOM05D006129 ORTHO05D007446 3.4e-299 1031.6 744 67.2
CsaV3_3G028800 Cucumis sativus L. HOM05D006129 ORTHO05D007446 4.4e-299 1031.2 751 68.2
Sed0004701 Sechium edule HOM05D006129 ORTHO05D007446 9.9e-299 1030.0 817 64.1
Lalb_Chr10g0095451 Lupinus albus HOM05D006129 ORTHO05D007446 4.1e-297 1024.6 715 69.1
Lj2g0010354 Lotus japonicus HOM05D006129 ORTHO05D007446 2.1e-296 1022.3 736 69.2
Rhsim11G0169300 Rhododendron simsii HOM05D006129 ORTHO05D007446 3.0e-295 1018.5 721 69.5
Aqoxy3G03484 Aquilegia oxysepala HOM05D006129 ORTHO05D007446 8.6e-295 1016.9 709 69.5
Ca_13480_v3 Cicer arietinum L. HOM05D006129 ORTHO05D007446 8.6e-295 1016.9 705 69.4
Medtr1g026035 Medicago truncatula HOM05D006129 ORTHO05D007446 1.8e-292 1009.2 707 67.9
TAR371G0476 Trochodendron aralioides HOM05D006129 ORTHO05D007446 1.8e-292 1009.2 769 67.0
THA.LOC104807348 Tarenaya hassleriana HOM05D006129 ORTHO05D007446 2.4e-292 1008.8 819 62.3
Glyma.20G009700 Glycine max HOM05D006129 ORTHO05D007446 3.1e-292 1008.4 680 69.9
Glyma.07G178800 Glycine max HOM05D006129 ORTHO05D007446 3.8e-290 1001.5 688 68.6
Eucgr.L01320 Eucalyptus grandis HOM05D006129 ORTHO05D007446 2.1e-288 995.7 776 64.6
TPR.G26422 Trifolium pratense HOM05D006129 ORTHO05D007446 2.3e-287 992.3 730 65.9
AL3G47590 Arabidopsis lyrata HOM05D006129 ORTHO05D007446 3.3e-286 988.4 744 65.6
Carub.0003s2972 Capsella rubella HOM05D006129 ORTHO05D007446 5.6e-286 987.6 831 62.1
VMungo0464G0688 Vigna mungo HOM05D006129 ORTHO05D007446 2.1e-285 985.7 749 63.7
Actinidia12976 Actinidia chinensis HOM05D006129 ORTHO05D007446 6.2e-285 984.2 830 62.8
DCAR_003623 Daucus carota HOM05D006129 ORTHO05D007446 8.1e-285 983.8 752 66.0
CARHR106180 Cardamine hirsuta HOM05D006129 ORTHO05D007446 1.4e-284 983.0 767 64.5
Thhalv10022548m.g Eutrema salsugineum HOM05D006129 ORTHO05D007446 1.8e-284 982.6 829 61.4
Phvul.002G308800 Phaseolus vulgaris HOM05D006129 ORTHO05D007446 2.4e-284 982.2 690 68.0
PGR042G1055 Punica granatum HOM05D006129 ORTHO05D007446 2.4e-284 982.2 818 61.5
Sp3g29130 Schrenkiella parvula HOM05D006129 ORTHO05D007446 6.9e-284 980.7 725 66.5
Peaxi162Scf00789g00530 Petunia axillaris HOM05D006129 ORTHO05D007446 7.6e-283 977.2 777 64.1
Oeu057674.1 Olea europaea HOM05D006129 ORTHO05D007446 3.2e-281 971.8 803 61.8
Sc08g0000140 Simmondsia chinensis HOM05D006129 ORTHO05D007446 1.5e-278 963.0 779 63.5
AT2G15820 Arabidopsis thaliana HOM05D006129 ORTHO05D007446 2.5e-278 962.2 826 59.4
A07p04960 Brassica napus HOM05D006129 ORTHO05D007446 4.3e-278 961.4 761 62.2
arahy.Tifrunner.gnm1.ann1.769PPM Arachis hypogaea HOM05D006129 ORTHO05D007446 8.1e-277 957.2 750 64.1
ECA234G4125 Erigeron canadensis HOM05D006129 ORTHO05D007446 9.0e-276 953.7 787 62.4
Nitab4.5_0007303g0010 Nicotiana tabacum HOM05D006129 ORTHO05D007446 2.6e-275 952.2 775 63.1
BcaC06g36090 Brassica carinata HOM05D006129 ORTHO05D007446 3.4e-275 951.8 814 59.8
C07p07940 Brassica napus HOM05D006129 ORTHO05D007446 3.4e-275 951.8 814 59.8
BolC7t41212H Brassica oleracea HOM05D006129 ORTHO05D007446 3.4e-275 951.8 814 59.8
Lsat_1_v5_gn_5_113460 Lactuca sativa HOM05D006129 ORTHO05D007446 7.6e-275 950.7 827 59.9
Nitab4.5_0001453g0090 Nicotiana tabacum HOM05D006129 ORTHO05D007446 2.2e-274 949.1 761 63.5
HanXRQChr10g0303221 Helianthus annuus HOM05D006129 ORTHO05D007446 2.9e-274 948.7 835 59.5
BraA07t28289Z Brassica rapa HOM05D006129 ORTHO05D007446 1.9e-273 946.0 781 60.3
Solyc11g066850.3 Solanum lycopersicum HOM05D006129 ORTHO05D007446 1.2e-272 943.3 768 62.1
CAN.G644.34 Capsicum annuum HOM05D006129 ORTHO05D007446 2.7e-272 942.2 702 66.2
BcaB03g16332 Brassica carinata HOM05D006129 ORTHO05D007446 1.5e-270 936.4 777 60.6
Aa31LG8G13380 Aethionema arabicum HOM05D006129 ORTHO05D007446 3.3e-270 935.3 819 59.2
MSTRG.20134 Avicennia marina HOM05D006129 ORTHO05D007446 3.0e-263 912.1 746 60.7
Migut.B00306 Erythranthe guttata HOM05D006129 ORTHO05D007446 2.1e-261 906.0 767 58.3
EL10Ac9g21818 Beta vulgaris HOM05D006129 ORTHO05D007446 9.0e-260 900.6 797 57.2
PGSC0003DMG400026525 Solanum tuberosum HOM05D006129 ORTHO05D007446 5.5e-257 891.3 656 66.3
Sopen11g026560 Solanum pennellii HOM05D006129 ORTHO05D007446 1.5e-254 883.2 661 66.1
AUR62011424 Chenopodium quinoa HOM05D006129 ORTHO05D007446 5.7e-254 881.3 713 60.7
FAN20G2787 Fragaria x ananassa HOM05D006129 ORTHO05D007446 5.3e-252 874.8 620 68.2
Sabra09G0081600 Salix brachista HOM05D006129 ORTHO05D007446 4.2e-249 865.1 584 72.4
unitig_744.g24241 Utricularia gibba HOM05D006129 ORTHO05D007446 2.5e-246 855.9 746 56.2
Ah.01g006750 Amaranthus hybridus HOM05D006129 ORTHO05D007446 1.3e-245 853.6 802 54.0
ATR0665G475 Amborella trichopoda HOM05D006129 ORTHO05D007446 2.0e-243 846.3 693 59.3
TAR629G1168 Trochodendron aralioides HOM05D006129 ORTHO05D007446 5.1e-239 831.6 546 73.3
SGA_v2.0_scaffold58G20604 Striga asiatica HOM05D006129 ORTHO05D007446 8.8e-239 830.9 797 53.5
AUR62016636 Chenopodium quinoa HOM05D006129 ORTHO05D007446 2.6e-235 819.3 647 62.4
Os02g0702000 Oryza sativa ssp. japonica HOM05D006129 ORTHO05D007446 7.7e-235 817.8 686 56.0
Medtr0381s0010 Medicago truncatula HOM05D006129 ORTHO05D007446 1.6e-232 810.1 608 64.6
Zm00001eb251880 Zea mays HOM05D006129 ORTHO05D007446 6.7e-231 804.7 750 52.7
HPP92_022045 Vanilla planifolia HOM05D006129 ORTHO05D007446 1.5e-230 803.5 759 53.5
Eucgr.G01504 Eucalyptus grandis HOM05D006129 ORTHO05D007446 3.7e-221 772.3 791 52.8
Eucgr.L00820 Eucalyptus grandis HOM05D006129 ORTHO05D007446 1.7e-189 667.2 591 60.1
SEGI_31419 Sequoiadendron giganteum HOM05D006129 ORTHO05D007446 5.1e-186 655.6 679 47.7
Psat6g001360 Pisum sativum HOM05D006129 ORTHO05D007446 3.3e-185 652.9 717 48.5
CDE04G1903 Ceratophyllum demersum HOM05D006129 ORTHO05D007446 1.5e-182 644.0 641 50.5
Cc02_g18440 Coffea canephora HOM05D006129 ORTHO05D007446 1.1e-167 594.7 468 64.7
Hund00318 Selenicereus undatus HOM05D006129 ORTHO05D007446 2.5e-148 530.4 427 60.4
Atru.chr5.2887 Acer truncatum HOM05D006129 ORTHO05D007446 5.5e-140 502.7 540 51.9
TAR371G0992 Trochodendron aralioides HOM05D006129 ORTHO05D007446 3.9e-130 469.9 748 40.6
Atru.chr5.2823 Acer truncatum HOM05D006129 ORTHO05D007446 1.8e-119 434.5 494 50.0
QL11p038542 Quercus lobata HOM05D006129 ORTHO05D007446 1.8e-114 417.9 304 68.8
TAR371G0058 Trochodendron aralioides HOM05D006129 ORTHO05D007446 4.1e-103 380.2 411 53.8
Pp3c25_10050 Physcomitrium patens HOM05D006129 ORTHO05D007446 7.7e-94 349.4 717 32.4
Atru.chr5.2826 Acer truncatum HOM05D006129 ORTHO05D007446 2.8e-91 340.9 354 55.4
Atru.chr5.2881 Acer truncatum HOM05D006129 ORTHO05D007446 1.4e-90 338.6 289 60.6
AagrBONN_evm.TU.Sc2ySwM_344.1734 Anthoceros agrestis HOM05D006129 ORTHO05D007446 1.2e-75 288.9 646 28.9
SMO356G0628 Selaginella moellendorffii HOM05D006129 ORTHO05D007446 3.2e-71 274.2 705 27.0
Mapoly0036s0055 Marchantia polymorpha HOM05D006129 ORTHO05D007446 1.7e-64 251.9 714 26.2
AagrBONN_evm.TU.Sc2ySwM_344.5085 Anthoceros agrestis HOM05D006129 ORTHO05D007446 1.2e-59 235.7 672 26.3
TAR629G1760 Trochodendron aralioides HOM05D006129 ORTHO05D007446 3.2e-55 221.1 229 54.1
arahy.Tifrunner.gnm1.ann1.SUMB0F Arachis hypogaea HOM05D006129 ORTHO05D007446 1.3e-48 199.1 173 62.4
Pp3c16_23700 Physcomitrium patens HOM05D006129 ORTHO05D007446 2.9e-48 198.0 733 25.4
Cc02_g18430 Coffea canephora HOM05D006129 ORTHO05D007446 2.0e-41 175.3 207 48.3
Atru.chr5.2882 Acer truncatum HOM05D006129 ORTHO05D007446 2.7e-38 164.9 200 47.0
QL11p038477 Quercus lobata HOM05D006129 ORTHO05D007446 1.6e-30 139.0 205 46.8
Atru.chr5.2820 Acer truncatum HOM05D006129 ORTHO05D007446 1.5e-17 95.9 82 57.3
RcHm_v2.0_Chr6g0302241 Rosa chinensis HOM05D006129 ORTHO05D007446 3.8e-16 91.3 53 73.6
CBR_g19584 Chara braunii HOM05D006129 ORTHO05D007446 6.5e-16 90.5 621 19.5
RcHm_v2.0_Chr1g0376021 Rosa chinensis HOM05D006129 ORTHO05D007446 4.6e-14 84.3 77 55.8
RcHm_v2.0_Chr2g0152801 Rosa chinensis HOM05D006129 ORTHO05D007446 1.8e-13 82.4 62 62.9
CBR_g8924 Chara braunii HOM05D006129 ORTHO05D007446 2.2e-11 75.5 731 18.9
TAR371G0388 Trochodendron aralioides HOM05D001464 ORTHO05D002836 1.8e-10 72.4 56 64.3
AagrBONN_evm.TU.Sc2ySwM_362.870 Anthoceros agrestis HOM05D000001 ORTHO05D000003 1.9e-07 62.4 340 22.4
FAN17G1880 Fragaria x ananassa HOM05D006414 ORTHO05D007780 3.2e-07 61.6 103 32.0
CsaV3_7G026080 Cucumis sativus L. HOM05D001779 ORTHO05D001753 4.2e-07 61.2 201 24.9
Pp3c2_12230 Physcomitrium patens HOM05D000001 ORTHO05D000003 4.2e-07 61.2 334 21.6
GSVIVG01000864001 Vitis vinifera HOM05D005973 ORTHO05D007285 1.6e-06 59.3 162 24.1
Cfa002578 Carpinus fangiana HOM05D001779 ORTHO05D001753 2.1e-06 58.9 284 21.5
MSTRG.20673 Avicennia marina HOM05D000300 ORTHO05D000383 2.7e-06 58.5 186 25.3
Peaxi162Scf00853g00422 Petunia axillaris HOM05D000300 ORTHO05D000383 2.7e-06 58.5 156 26.3
Solyc01g089870.3 Solanum lycopersicum HOM05D000300 ORTHO05D000383 2.7e-06 58.5 174 24.7
AagrBONN_evm.TU.Sc2ySwM_117.4077 Anthoceros agrestis HOM05D000001 ORTHO05D000003 3.6e-06 58.2 234 22.2
CiPaw.04G104900 Carya illinoinensis HOM05D001779 ORTHO05D001753 3.6e-06 58.2 273 22.7
MELO3C021027.2 Cucumis melo HOM05D001779 ORTHO05D001753 3.6e-06 58.2 201 23.9
ClCG09G008970 Citrullus lanatus HOM05D001779 ORTHO05D001753 6.1e-06 57.4 197 24.9
DCAR_017247 Daucus carota HOM05D000891 ORTHO05D000761 6.1e-06 57.4 278 22.3
Sopen01g035710 Solanum pennellii HOM05D000300 ORTHO05D000383 6.1e-06 57.4 174 24.7
Cc01_g12860 Coffea canephora HOM05D006354 ORTHO05D007773 7.9e-06 57.0 536 20.0


User provided reference genes

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