Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G9845 Trifolium pratense HOM05D004484 ORTHO05D005370 0.0e+00 1273.5 696 100.0
Medtr4g023560 Medicago truncatula HOM05D004484 ORTHO05D005370 0.0e+00 1184.9 715 84.6
Ca_19886_v3 Cicer arietinum L. HOM05D004484 ORTHO05D005370 0.0e+00 1152.5 716 82.0
Psat7g233440 Pisum sativum HOM05D004484 ORTHO05D005370 0.0e+00 1142.1 715 81.3
Ca_27059_v3 Cicer arietinum L. HOM05D004484 ORTHO05D005370 0.0e+00 1127.9 716 80.3
Lj3g0013484 Lotus japonicus HOM05D004484 ORTHO05D005370 1.2e-302 1042.7 714 74.8
Lalb_Chr13g0291731 Lupinus albus HOM05D004484 ORTHO05D005370 1.4e-298 1029.2 720 73.5
Phvul.002G205800 Phaseolus vulgaris HOM05D004484 ORTHO05D005370 1.2e-292 1009.6 713 72.5
Glyma.05G125700 Glycine max HOM05D004484 ORTHO05D005370 8.3e-291 1003.4 719 72.6
Lalb_Chr12g0208261 Lupinus albus HOM05D004484 ORTHO05D005370 6.0e-281 970.7 720 69.3
VMungo0251G1206 Vigna mungo HOM05D004484 ORTHO05D005370 1.5e-279 966.1 711 69.3
arahy.Tifrunner.gnm1.ann1.V1M046 Arachis hypogaea HOM05D004484 ORTHO05D005370 1.9e-279 965.7 717 70.0
arahy.Tifrunner.gnm1.ann1.6K85L9 Arachis hypogaea HOM05D004484 ORTHO05D005370 3.6e-278 961.4 717 69.7
arahy.Tifrunner.gnm1.ann1.HW1IVJ Arachis hypogaea HOM05D004484 ORTHO05D005370 3.6e-278 961.4 717 69.7
arahy.Tifrunner.gnm1.ann1.Q9SWB6 Arachis hypogaea HOM05D004484 ORTHO05D005370 1.1e-277 959.9 717 69.3
QL08p052472 Quercus lobata HOM05D004484 ORTHO05D005370 3.4e-268 928.3 719 66.2
CiPaw.01G262000 Carya illinoinensis HOM05D004484 ORTHO05D005370 1.7e-267 926.0 721 65.3
Prupe.2G145600 Prunus persica HOM05D004484 ORTHO05D005370 1.1e-266 923.3 719 66.2
Dinv32377 Davidia involucrata HOM05D004484 ORTHO05D005370 1.9e-266 922.5 720 65.8
Potri.014G069700 Populus trichocarpa HOM05D004484 ORTHO05D005370 9.0e-261 903.7 717 64.3
Haze_16815 Corylus avellana HOM05D004484 ORTHO05D005370 4.5e-260 901.4 777 61.3
MD07G1121000 Malus domestica HOM05D004484 ORTHO05D005370 4.5e-260 901.4 715 65.3
Eucgr.E01418 Eucalyptus grandis HOM05D004484 ORTHO05D005370 2.3e-256 889.0 720 62.2
Lj7A528T57 Lonicera japonica HOM05D004484 ORTHO05D005370 1.3e-254 883.2 729 63.1
Sed0020955 Sechium edule HOM05D004484 ORTHO05D005370 1.3e-254 883.2 718 62.8
Manes.01G265900 Manihot esculenta HOM05D004484 ORTHO05D005370 3.7e-254 881.7 725 62.6
TWI23G0227 Tripterygium wilfordii HOM05D004484 ORTHO05D005370 4.0e-253 878.2 717 63.5
Cc02_g36700 Coffea canephora HOM05D004484 ORTHO05D005370 1.5e-252 876.3 718 62.0
Thecc.01G376200 Theobroma cacao HOM05D004484 ORTHO05D005370 2.6e-252 875.5 719 62.0
Atru.chr5.309 Acer truncatum HOM05D004484 ORTHO05D005370 5.8e-252 874.4 715 62.8
Hma1.2p1_0086F.1_g044870 Hydrangea macrophylla HOM05D004484 ORTHO05D005370 5.8e-252 874.4 715 63.1
Oeu055487.1 Olea europaea HOM05D004484 ORTHO05D005370 1.3e-251 873.2 719 62.3
CANSAT56G4533 Cannabis sativa HOM05D004484 ORTHO05D005370 3.8e-251 871.7 718 63.0
Aqoxy5G00403 Aquilegia oxysepala HOM05D004484 ORTHO05D005370 1.4e-250 869.8 717 62.9
FvH4_7g11900 Fragaria vesca HOM05D004484 ORTHO05D005370 5.5e-250 867.8 720 61.5
PSO478G5008 Papaver somniferum HOM05D004484 ORTHO05D005370 1.2e-249 866.7 723 61.4
FAN01G0628 Fragaria x ananassa HOM05D004484 ORTHO05D005370 1.6e-249 866.3 720 61.2
Nitab4.5_0000457g0330 Nicotiana tabacum HOM05D004484 ORTHO05D005370 1.6e-249 866.3 721 60.9
GSVIVG01027610001 Vitis vinifera HOM05D004484 ORTHO05D005370 1.8e-248 862.8 705 62.8
CANSAT56G1200 Cannabis sativa HOM05D004484 ORTHO05D005370 8.7e-248 860.5 718 62.3
ClCG05G002220 Citrullus lanatus HOM05D004484 ORTHO05D005370 3.3e-247 858.6 718 61.7
CsaV3_3G009680 Cucumis sativus L. HOM05D004484 ORTHO05D005370 1.3e-246 856.7 720 60.4
FAN06G3319 Fragaria x ananassa HOM05D004484 ORTHO05D005370 1.3e-246 856.7 720 61.0
FAN10G1483 Fragaria x ananassa HOM05D004484 ORTHO05D005370 2.8e-246 855.5 720 61.0
Nn1g01233 Nelumbo nucifera HOM05D004484 ORTHO05D005370 2.8e-246 855.5 715 61.0
TAR629G2468 Trochodendron aralioides HOM05D004484 ORTHO05D005370 3.7e-246 855.1 701 63.6
FAN06G1787 Fragaria x ananassa HOM05D004484 ORTHO05D005370 1.1e-245 853.6 720 60.8
Sabra14G0049400 Salix brachista HOM05D004484 ORTHO05D005370 1.8e-245 852.8 730 60.1
PGR042G0667 Punica granatum HOM05D004484 ORTHO05D005370 5.3e-245 851.3 723 60.7
FAN10G2369 Fragaria x ananassa HOM05D004484 ORTHO05D005370 6.9e-245 850.9 720 60.7
ECA234G1700 Erigeron canadensis HOM05D004484 ORTHO05D005370 1.5e-244 849.7 719 59.8
DCAR_015907 Daucus carota HOM05D004484 ORTHO05D005370 2.6e-244 849.0 721 61.0
MSTRG.20748 Avicennia marina HOM05D004484 ORTHO05D005370 3.4e-244 848.6 712 61.0
PGSC0003DMG400012761 Solanum tuberosum HOM05D004484 ORTHO05D005370 2.5e-242 842.4 720 58.9
MBI12_g10758_MAGBIO Magnolia biondii HOM05D004484 ORTHO05D005370 3.2e-242 842.0 751 58.7
CAN.G388.13 Capsicum annuum HOM05D004484 ORTHO05D005370 4.2e-242 841.6 716 59.4
Peaxi162Scf00021g01723 Petunia axillaris HOM05D004484 ORTHO05D005370 4.2e-242 841.6 721 59.4
CSS0036976 Camellia sinensis var. sinensis HOM05D004484 ORTHO05D005370 7.2e-242 840.9 722 62.2
Cpa.g.sc18.115 Carica papaya HOM05D004484 ORTHO05D005370 2.1e-241 839.3 718 60.4
MELO3C006188.2 Cucumis melo HOM05D004484 ORTHO05D005370 6.1e-241 837.8 653 63.4
HanXRQChr16g0520161 Helianthus annuus HOM05D004484 ORTHO05D005370 1.0e-240 837.0 716 58.9
Ciclev10019016m.g Citrus clementina HOM05D004484 ORTHO05D005370 5.1e-240 834.7 721 59.6
Sc02g0002590 Simmondsia chinensis HOM05D004484 ORTHO05D005370 1.1e-239 833.6 703 60.5
Nitab4.5_0005372g0070 Nicotiana tabacum HOM05D004484 ORTHO05D005370 5.3e-237 824.7 731 58.1
Migut.B01635 Erythranthe guttata HOM05D004484 ORTHO05D005370 6.9e-237 824.3 718 59.1
Solyc01g091350.4 Solanum lycopersicum HOM05D004484 ORTHO05D005370 1.0e-235 820.5 720 57.5
Sopen01g037090 Solanum pennellii HOM05D004484 ORTHO05D005370 1.0e-235 820.5 720 57.1
EL10Ac1g00900 Beta vulgaris HOM05D004484 ORTHO05D005370 1.7e-235 819.7 741 56.4
Gorai.007G091100 Gossypium raimondii HOM05D004484 ORTHO05D005370 2.9e-235 818.9 717 58.9
vmacro13399 Vaccinium macrocarpon HOM05D004484 ORTHO05D005370 8.5e-235 817.4 722 59.6
Lsat_1_v5_gn_4_43240 Lactuca sativa HOM05D004484 ORTHO05D005370 3.2e-234 815.5 716 58.0
Gohir.D11G085300 Gossypium hirsutum HOM05D004484 ORTHO05D005370 4.2e-234 815.1 717 58.9
Gohir.A11G080700 Gossypium hirsutum HOM05D004484 ORTHO05D005370 4.7e-233 811.6 717 58.4
SGA_v2.0_scaffold153G37012 Striga asiatica HOM05D004484 ORTHO05D005370 4.7e-233 811.6 720 58.5
AUR62004221 Chenopodium quinoa HOM05D004484 ORTHO05D005370 1.2e-228 797.0 752 55.7
Aqoxy3G02138 Aquilegia oxysepala HOM05D004484 ORTHO05D005370 7.7e-228 794.3 720 56.9
FAN03G1897 Fragaria x ananassa HOM05D004484 ORTHO05D005370 3.2e-226 788.9 721 58.1
Cfa001721 Carpinus fangiana HOM05D004484 ORTHO05D005370 9.7e-223 777.3 584 67.3
Ah.13g073490 Amaranthus hybridus HOM05D004484 ORTHO05D005370 4.1e-221 771.9 749 54.2
THA.LOC104817247 Tarenaya hassleriana HOM05D004484 ORTHO05D005370 4.7e-217 758.4 719 55.6
GSVIVG01027609001 Vitis vinifera HOM05D004484 ORTHO05D005370 1.0e-216 757.3 649 59.9
SHI13523 Sapria himalayana HOM05D004484 ORTHO05D005370 1.9e-210 736.5 688 56.7
AT1G48050 Arabidopsis thaliana HOM05D004484 ORTHO05D005370 2.5e-210 736.1 716 53.2
BcaB04g17469 Brassica carinata HOM05D004484 ORTHO05D005370 3.2e-210 735.7 717 52.7
Carub.0001s3716 Capsella rubella HOM05D004484 ORTHO05D005370 3.2e-210 735.7 715 53.3
Sp1g35020 Schrenkiella parvula HOM05D004484 ORTHO05D005370 1.2e-209 733.8 717 52.4
CARHR037700 Cardamine hirsuta HOM05D004484 ORTHO05D005370 1.0e-208 730.7 711 53.0
arahy.Tifrunner.gnm1.ann1.03ZR4A Arachis hypogaea HOM05D004484 ORTHO05D005370 1.4e-208 730.3 707 56.7
BcaC07g37180 Brassica carinata HOM05D004484 ORTHO05D005370 1.4e-208 730.3 718 52.9
BraSC267t45947Z Brassica rapa HOM05D004484 ORTHO05D005370 8.8e-208 727.6 712 52.2
C08p05620 Brassica napus HOM05D004484 ORTHO05D005370 2.2e-206 723.0 712 52.4
BolC8t47375H Brassica oleracea HOM05D004484 ORTHO05D005370 2.2e-206 723.0 712 52.4
arahy.Tifrunner.gnm1.ann1.5WGS6V Arachis hypogaea HOM05D004484 ORTHO05D005370 1.2e-204 717.2 687 57.5
AL1G54570 Arabidopsis lyrata HOM05D004484 ORTHO05D005370 2.3e-203 713.0 698 53.2
AUR62013627 Chenopodium quinoa HOM05D004484 ORTHO05D005370 3.0e-200 702.6 736 51.8
A08p05330 Brassica napus HOM05D004484 ORTHO05D005370 1.5e-199 700.3 696 51.9
COL.COLO4_12548 Corchorus olitorius HOM05D004484 ORTHO05D005370 4.9e-198 695.3 722 51.9
Hund27347 Selenicereus undatus HOM05D004484 ORTHO05D005370 3.5e-196 689.1 606 58.9
arahy.Tifrunner.gnm1.ann1.5492A7 Arachis hypogaea HOM05D004484 ORTHO05D005370 4.7e-193 678.7 718 54.3
Zm00001eb064930 Zea mays HOM05D004484 ORTHO05D005370 2.6e-191 672.9 701 51.4
HPP92_027818 Vanilla planifolia HOM05D004484 ORTHO05D005370 1.3e-187 660.6 719 50.2
arahy.Tifrunner.gnm1.ann1.T9R8PC Arachis hypogaea HOM05D004484 ORTHO05D005370 3.9e-187 659.1 705 53.8
COL.COLO4_07018 Corchorus olitorius HOM05D004484 ORTHO05D005370 5.8e-183 645.2 565 57.5
Potri.002G148200 Populus trichocarpa HOM05D004484 ORTHO05D005370 5.6e-170 602.1 489 63.0
unitig_749.g13780 Utricularia gibba HOM05D004484 ORTHO05D005370 4.0e-168 595.9 565 56.1
Hma1.2p1_0086F.1_g044880 Hydrangea macrophylla HOM05D004484 ORTHO05D005370 2.1e-161 573.5 450 65.1
Aa31LG10G5650 Aethionema arabicum HOM05D004484 ORTHO05D005370 2.3e-155 553.5 578 51.4
Lj9C569T11 Lonicera japonica HOM05D004484 ORTHO05D005370 4.3e-154 549.3 466 59.2
Pp3c22_11100 Physcomitrium patens HOM05D004484 ORTHO05D005370 7.3e-154 548.5 722 41.3
Thhalv10011351m.g Eutrema salsugineum HOM05D004484 ORTHO05D005370 4.8e-153 545.8 679 45.4
SMO367G0514 Selaginella moellendorffii HOM05D004484 ORTHO05D005370 1.4e-149 534.3 715 42.4
CDE04G3156 Ceratophyllum demersum HOM05D004484 ORTHO05D005370 3.5e-148 529.6 706 43.2
ATR0049G077 Amborella trichopoda HOM05D004484 ORTHO05D005370 3.3e-146 523.1 488 54.3
RcHm_v2.0_Chr1g0350581 Rosa chinensis HOM05D004484 ORTHO05D005370 7.6e-143 511.9 386 65.8
Mapoly0129s0012 Marchantia polymorpha HOM05D004484 ORTHO05D005370 1.9e-138 497.3 683 40.7
PGR119G1536 Punica granatum HOM05D004484 ORTHO05D005370 8.4e-134 481.9 543 47.7
AagrBONN_evm.TU.Sc2ySwM_368.3373 Anthoceros agrestis HOM05D004484 ORTHO05D005370 5.0e-118 429.5 714 36.0
RcHm_v2.0_Chr1g0350571 Rosa chinensis HOM05D004484 ORTHO05D005370 2.7e-108 397.1 298 67.4
CBR_g30081 Chara braunii HOM05D004484 ORTHO05D005370 8.0e-92 342.4 634 33.0
Glyma.01G142851 Glycine max HOM05D004484 ORTHO05D005370 2.2e-65 254.6 164 79.3
SHI38094 Sapria himalayana HOM05D004484 ORTHO05D005370 6.6e-62 243.0 242 54.5
SHI38996 Sapria himalayana HOM05D004484 ORTHO05D005370 1.1e-59 235.7 228 55.3
arahy.Tifrunner.gnm1.ann1.47H85H Arachis hypogaea HOM05D004484 ORTHO05D005370 1.2e-55 222.2 324 44.1
SHI38095 Sapria himalayana HOM05D004484 ORTHO05D005370 5.6e-53 213.4 190 58.9
Hma1.2p1_0701F.1_g205850 Hydrangea macrophylla HOM05D004484 ORTHO05D005370 2.0e-50 204.9 263 46.4
SEGI_20047 Sequoiadendron giganteum HOM05D004484 ORTHO05D005370 3.8e-49 200.7 225 47.6
Glyma.06G243967 Glycine max HOM05D004484 ORTHO05D005370 2.0e-42 178.3 109 74.3
QL08p052505 Quercus lobata HOM05D004484 ORTHO05D005370 6.4e-41 173.3 156 60.3
Hma1.2p1_0170F.1_g075250 Hydrangea macrophylla HOM05D004484 ORTHO05D005370 1.1e-40 172.6 183 51.4
Carub.0004s0917 Capsella rubella HOM05D004484 ORTHO05D005370 5.4e-40 170.2 239 42.3
SHI38995 Sapria himalayana HOM05D004484 ORTHO05D005370 4.5e-34 150.6 157 52.9
Glyma.17G005802 Glycine max HOM05D004484 ORTHO05D005370 8.4e-33 146.4 175 49.7
SGA_v2.0_scaffold65G22170 Striga asiatica HOM05D004484 ORTHO05D005370 1.3e-28 132.5 182 39.6
Glyma.06G243934 Glycine max HOM05D004484 ORTHO05D005370 1.5e-26 125.6 81 79.0
MCO15G158 Micromonas commoda HOM05D004484 ORTHO05D005370 2.0e-26 125.2 421 26.4
Solyc01g091430.2 Solanum lycopersicum HOM05D004484 ORTHO05D005370 5.8e-26 123.6 98 63.3
Glyma.06G244302 Glycine max HOM05D004484 ORTHO05D005370 1.3e-25 122.5 117 60.7
Os03g0856200 Oryza sativa ssp. japonica HOM05D004484 ORTHO05D005370 2.9e-25 121.3 128 51.6
CAN.G388.14 Capsicum annuum HOM05D004484 ORTHO05D005370 1.0e-22 112.8 76 67.1
Aa31LG10G5660 Aethionema arabicum HOM05D004484 ORTHO05D005370 3.9e-22 110.9 125 46.4
Eucgr.I00725 Eucalyptus grandis HOM05D004484 ORTHO05D005370 3.3e-21 107.8 69 72.5
TPR.G9848 Trifolium pratense HOM05D000164 ORTHO05D000096 2.1e-20 105.1 54 94.4
Eucgr.E01421 Eucalyptus grandis HOM05D004484 ORTHO05D005370 6.5e-17 93.6 67 68.7
CAN.G594.7 Capsicum annuum HOM05D004484 ORTHO05D005370 1.1e-16 92.8 68 64.7
TPR.G22633 Trifolium pratense HOM05D004484 ORTHO05D005370 3.2e-16 91.3 93 58.1
SGA_v2.0_scaffold172G39032 Striga asiatica HOM05D004484 ORTHO05D005370 4.2e-16 90.9 165 33.9
SGA_v2.0_scaffold10G05342 Striga asiatica HOM05D004484 ORTHO05D005370 9.3e-16 89.7 165 33.9
SEGI_29754 Sequoiadendron giganteum HOM05D004484 ORTHO05D005370 3.5e-15 87.8 67 59.7
Eucgr.L02075 Eucalyptus grandis HOM05D004484 ORTHO05D005370 1.8e-14 85.5 67 65.7
SGA_v2.0_scaffold29G12247 Striga asiatica HOM05D004484 ORTHO05D005370 1.1e-13 82.8 169 34.3
PRCOL_00002704 Prasinoderma coloniale HOM05D004484 ORTHO05D005370 2.4e-11 75.1 146 37.7
Solyc01g091440.4 Solanum lycopersicum HOM05D004484 ORTHO05D005370 3.1e-11 74.7 45 75.6
CAN.G321.48 Capsicum annuum HOM05D001267 ORTHO05D002376 2.2e-09 68.6 86 46.5
Oeu032522.1 Olea europaea HOM05D004484 ORTHO05D005370 1.9e-08 65.5 63 54.0
arahy.Tifrunner.gnm1.ann1.0F06NC Arachis hypogaea HOM05D004484 ORTHO05D005370 6.1e-07 60.5 79 44.3
CAN.G205.22 Capsicum annuum HOM05D004484 ORTHO05D005370 6.1e-07 60.5 93 39.8


User provided reference genes

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