Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G819 Trifolium pratense HOM05D001605 ORTHO05D003014 1.7e-70 269.2 137 100.0
Phvul.009G134600 Phaseolus vulgaris HOM05D001605 ORTHO05D003014 1.3e-62 243.0 153 83.0
VMungo1309G2477 Vigna mungo HOM05D001605 ORTHO05D003014 1.3e-62 243.0 151 84.1
Psat5g080840 Pisum sativum HOM05D001605 ORTHO05D003014 2.9e-62 241.9 150 84.0
Ca_16648_v3 Cicer arietinum L. HOM05D001605 ORTHO05D003014 8.4e-62 240.4 151 84.1
Glyma.06G122500 Glycine max HOM05D001605 ORTHO05D003014 1.9e-61 239.2 151 81.5
arahy.Tifrunner.gnm1.ann1.SUKE0C Arachis hypogaea HOM05D001605 ORTHO05D003014 4.2e-61 238.0 151 83.4
arahy.Tifrunner.gnm1.ann1.XKFQ8F Arachis hypogaea HOM05D001605 ORTHO05D003014 4.2e-61 238.0 151 83.4
Glyma.04G240900 Glycine max HOM05D001605 ORTHO05D003014 9.3e-61 236.9 151 81.5
Lj1g0017948 Lotus japonicus HOM05D001605 ORTHO05D003014 1.1e-58 229.9 151 78.8
Lalb_Chr23g0271331 Lupinus albus HOM05D001605 ORTHO05D003014 1.5e-58 229.6 153 78.4
Lalb_Chr11g0066411 Lupinus albus HOM05D001605 ORTHO05D003014 3.3e-58 228.4 153 78.4
Lalb_Chr08g0240791 Lupinus albus HOM05D001605 ORTHO05D003014 5.6e-58 227.6 153 78.4
MD10G1013600 Malus domestica HOM05D001605 ORTHO05D003014 1.3e-57 226.5 153 74.5
Medtr1g023870 Medicago truncatula HOM05D001605 ORTHO05D003014 2.4e-56 222.2 135 85.2
MD05G1013100 Malus domestica HOM05D001605 ORTHO05D003014 9.0e-56 220.3 153 73.2
ClCG08G006430 Citrullus lanatus HOM05D001605 ORTHO05D003014 1.2e-55 219.9 152 75.0
CsaV3_6G031000 Cucumis sativus L. HOM05D001605 ORTHO05D003014 1.2e-55 219.9 152 75.0
Prupe.8G018000 Prunus persica HOM05D001605 ORTHO05D003014 1.2e-55 219.9 151 74.8
Medtr3g089910 Medicago truncatula HOM05D001605 ORTHO05D003014 2.6e-55 218.8 136 84.6
Sed0025518 Sechium edule HOM05D001605 ORTHO05D003014 1.0e-54 216.9 153 73.2
Manes.02G174700 Manihot esculenta HOM05D001605 ORTHO05D003014 1.3e-54 216.5 154 76.0
Sed0025239 Sechium edule HOM05D001605 ORTHO05D003014 1.7e-54 216.1 153 72.5
Oeu001561.1 Olea europaea HOM05D001605 ORTHO05D003014 2.2e-54 215.7 154 72.7
RcHm_v2.0_Chr6g0277331 Rosa chinensis HOM05D001605 ORTHO05D003014 4.9e-54 214.5 153 71.2
arahy.Tifrunner.gnm1.ann1.E7CKP3 Arachis hypogaea HOM05D001605 ORTHO05D003014 7.1e-53 210.7 128 84.4
Manes.18G086700 Manihot esculenta HOM05D001605 ORTHO05D003014 7.1e-53 210.7 151 74.8
MBI04_g13672_MAGBIO Magnolia biondii HOM05D001605 ORTHO05D003014 1.2e-52 209.9 135 78.5
QL02p025489 Quercus lobata HOM05D001605 ORTHO05D003014 2.7e-52 208.8 152 71.7
TWI60G0151 Tripterygium wilfordii HOM05D001605 ORTHO05D003014 2.7e-52 208.8 151 70.2
Potri.009G124200 Populus trichocarpa HOM05D001605 ORTHO05D003014 3.5e-52 208.4 152 73.0
Cfa018371 Carpinus fangiana HOM05D001605 ORTHO05D003014 4.6e-52 208.0 152 73.0
Haze_17697 Corylus avellana HOM05D001605 ORTHO05D003014 6.0e-52 207.6 152 72.4
FvH4_2g14770 Fragaria vesca HOM05D001605 ORTHO05D003014 7.9e-52 207.2 152 69.7
FAN15G1258 Fragaria x ananassa HOM05D001605 ORTHO05D003014 7.9e-52 207.2 152 69.7
FAN24G3135 Fragaria x ananassa HOM05D001605 ORTHO05D003014 7.9e-52 207.2 152 69.7
Dinv41129 Davidia involucrata HOM05D001605 ORTHO05D003014 1.0e-51 206.8 152 71.1
FAN20G0370 Fragaria x ananassa HOM05D001605 ORTHO05D003014 1.0e-51 206.8 152 69.7
Hma1.2p1_0107F.1_g051400 Hydrangea macrophylla HOM05D001605 ORTHO05D003014 1.0e-51 206.8 151 71.5
Lj4C691T3 Lonicera japonica HOM05D001605 ORTHO05D003014 1.0e-51 206.8 154 70.8
Potri.004G162500 Populus trichocarpa HOM05D001605 ORTHO05D003014 1.0e-51 206.8 152 71.1
Hund26733 Selenicereus undatus HOM05D001605 ORTHO05D003014 1.0e-51 206.8 138 74.6
COL.COLO4_08860 Corchorus olitorius HOM05D001605 ORTHO05D003014 1.3e-51 206.5 149 70.5
TWI34G1926 Tripterygium wilfordii HOM05D001605 ORTHO05D003014 3.0e-51 205.3 153 68.6
Dinv25801 Davidia involucrata HOM05D001605 ORTHO05D003014 3.9e-51 204.9 152 70.4
DCAR_010233 Daucus carota HOM05D001605 ORTHO05D003014 5.1e-51 204.5 151 70.2
Migut.C01045 Erythranthe guttata HOM05D001605 ORTHO05D003014 5.1e-51 204.5 154 70.1
Thecc.08G143700 Theobroma cacao HOM05D001605 ORTHO05D003014 8.7e-51 203.8 149 69.8
Duzib116G0915 Durio zibethinus HOM05D001605 ORTHO05D003014 1.1e-50 203.4 149 69.1
SGA_v2.0_scaffold48G17942 Striga asiatica HOM05D001605 ORTHO05D003014 1.5e-50 203.0 149 69.8
SalBow7G2351 Salvia bowleyana HOM05D001605 ORTHO05D003014 1.9e-50 202.6 154 67.5
Cpa.g.sc188.8 Carica papaya HOM05D001605 ORTHO05D003014 2.5e-50 202.2 152 69.1
Nn5g28614 Nelumbo nucifera HOM05D001605 ORTHO05D003014 3.3e-50 201.8 152 69.7
Gorai.009G284500 Gossypium raimondii HOM05D001605 ORTHO05D003014 4.3e-50 201.4 149 67.8
Gorai.005G082600 Gossypium raimondii HOM05D001605 ORTHO05D003014 9.7e-50 200.3 148 68.9
Gorai.009G252200 Gossypium raimondii HOM05D001605 ORTHO05D003014 9.7e-50 200.3 149 67.8
Gohir.A02G067000 Gossypium hirsutum HOM05D001605 ORTHO05D003014 1.3e-49 199.9 148 68.9
PSO063G1730 Papaver somniferum HOM05D001605 ORTHO05D003014 1.3e-49 199.9 138 73.2
PSO782G0565 Papaver somniferum HOM05D001605 ORTHO05D003014 1.3e-49 199.9 138 73.2
CANSAT25G3051 Cannabis sativa HOM05D001605 ORTHO05D003014 1.6e-49 199.5 154 68.8
HanXRQChr04g0125191 Helianthus annuus HOM05D001605 ORTHO05D003014 2.2e-49 199.1 130 76.9
Gohir.A05G269500 Gossypium hirsutum HOM05D001605 ORTHO05D003014 2.8e-49 198.7 149 67.1
Gohir.D05G271600 Gossypium hirsutum HOM05D001605 ORTHO05D003014 2.8e-49 198.7 149 67.1
Solyc04g064700.4 Solanum lycopersicum HOM05D001605 ORTHO05D003014 3.7e-49 198.4 154 67.5
Sopen04g026660 Solanum pennellii HOM05D001605 ORTHO05D003014 3.7e-49 198.4 154 67.5
PGSC0003DMG402024850 Solanum tuberosum HOM05D001605 ORTHO05D003014 3.7e-49 198.4 154 67.5
Duzib041G0436 Durio zibethinus HOM05D001605 ORTHO05D003014 6.3e-49 197.6 149 67.8
Nitab4.5_0000445g0150 Nicotiana tabacum HOM05D001605 ORTHO05D003014 6.3e-49 197.6 154 68.2
Atru.chr13.1705 Acer truncatum HOM05D001605 ORTHO05D003014 1.1e-48 196.8 154 69.5
MSTRG.1376 Avicennia marina HOM05D001605 ORTHO05D003014 1.1e-48 196.8 153 69.9
AUR62026789 Chenopodium quinoa HOM05D001605 ORTHO05D003014 1.4e-48 196.4 134 74.6
Gohir.D05G242900 Gossypium hirsutum HOM05D001605 ORTHO05D003014 1.4e-48 196.4 149 67.1
Gohir.D02G073200 Gossypium hirsutum HOM05D001605 ORTHO05D003014 1.8e-48 196.1 148 68.2
Sabra09G0095400 Salix brachista HOM05D001605 ORTHO05D003014 1.8e-48 196.1 175 63.4
THA.LOC104806843 Tarenaya hassleriana HOM05D001605 ORTHO05D003014 2.4e-48 195.7 138 71.7
Peaxi162Scf00263g00122 Petunia axillaris HOM05D001605 ORTHO05D003014 3.1e-48 195.3 154 66.2
AUR62013483 Chenopodium quinoa HOM05D001605 ORTHO05D003014 4.1e-48 194.9 134 73.1
Ciclev10000121m.g Citrus clementina HOM05D001605 ORTHO05D003014 4.1e-48 194.9 152 71.1
unitig_748.g7696 Utricularia gibba HOM05D001605 ORTHO05D003014 4.1e-48 194.9 154 65.6
GSVIVG01010022001 Vitis vinifera HOM05D001605 ORTHO05D003014 5.3e-48 194.5 151 67.5
ATR0665G314 Amborella trichopoda HOM05D001605 ORTHO05D003014 6.9e-48 194.1 151 67.5
TAR381G0699 Trochodendron aralioides HOM05D001605 ORTHO05D003014 6.9e-48 194.1 153 67.3
CSS0028371 Camellia sinensis var. sinensis HOM05D001605 ORTHO05D003014 9.0e-48 193.7 152 66.4
Aqoxy3G04296 Aquilegia oxysepala HOM05D001605 ORTHO05D003014 1.2e-47 193.4 152 68.4
THA.LOC104798874 Tarenaya hassleriana HOM05D001605 ORTHO05D003014 3.4e-47 191.8 134 73.1
Cc10_g12970 Coffea canephora HOM05D001605 ORTHO05D003014 4.5e-47 191.4 150 68.0
MELO3C008414.2 Cucumis melo HOM05D001605 ORTHO05D003014 4.5e-47 191.4 141 73.0
Ah.05g167510 Amaranthus hybridus HOM05D001605 ORTHO05D003014 2.2e-46 189.1 154 66.2
AL6G42110 Arabidopsis lyrata HOM05D001605 ORTHO05D003014 3.8e-46 188.3 136 71.3
Carub.0006s2691 Capsella rubella HOM05D001605 ORTHO05D003014 3.8e-46 188.3 136 71.3
Lsat_1_v5_gn_3_132801 Lactuca sativa HOM05D001605 ORTHO05D003014 3.8e-46 188.3 151 68.2
TAR625G1035 Trochodendron aralioides HOM05D001605 ORTHO05D003014 5.0e-46 188.0 155 65.2
Nitab4.5_0009413g0010 Nicotiana tabacum HOM05D001605 ORTHO05D003014 6.5e-46 187.6 148 67.6
AT4G08350 Arabidopsis thaliana HOM05D001605 ORTHO05D003014 1.1e-45 186.8 136 70.6
Rhsim06G0090800 Rhododendron simsii HOM05D001605 ORTHO05D003014 1.1e-45 186.8 154 63.0
Thhalv10028382m.g Eutrema salsugineum HOM05D001605 ORTHO05D003014 1.9e-45 186.0 138 69.6
Actinidia16593 Actinidia chinensis HOM05D001605 ORTHO05D003014 3.2e-45 185.3 150 64.0
CiPaw.16G018200 Carya illinoinensis HOM05D001605 ORTHO05D003014 3.2e-45 185.3 152 68.4
CDE07G1070 Ceratophyllum demersum HOM05D001605 ORTHO05D003014 5.5e-45 184.5 135 68.9
Sp6g09600 Schrenkiella parvula HOM05D001605 ORTHO05D003014 5.5e-45 184.5 136 69.9
vmacro21127 Vaccinium macrocarpon HOM05D001605 ORTHO05D003014 5.5e-45 184.5 154 62.3
BcaB01g02866 Brassica carinata HOM05D001605 ORTHO05D003014 7.2e-45 184.1 136 69.9
CARHR259450 Cardamine hirsuta HOM05D001605 ORTHO05D003014 9.4e-45 183.7 136 70.6
BcaB01g01341 Brassica carinata HOM05D001605 ORTHO05D003014 1.2e-44 183.3 136 69.1
BcaC01g04775 Brassica carinata HOM05D001605 ORTHO05D003014 1.2e-44 183.3 136 69.9
C03p33860 Brassica napus HOM05D001605 ORTHO05D003014 1.2e-44 183.3 136 69.9
BolC3t15701H Brassica oleracea HOM05D001605 ORTHO05D003014 1.2e-44 183.3 136 69.9
A03p27980 Brassica napus HOM05D001605 ORTHO05D003014 2.7e-44 182.2 136 69.1
BraA03t12015Z Brassica rapa HOM05D001605 ORTHO05D003014 2.7e-44 182.2 136 69.1
A09p30220 Brassica napus HOM05D001605 ORTHO05D003014 1.4e-43 179.9 136 67.6
BcaC04g20905 Brassica carinata HOM05D001605 ORTHO05D003014 5.1e-43 177.9 136 66.9
C09p38130 Brassica napus HOM05D001605 ORTHO05D003014 5.1e-43 177.9 136 66.9
BolC9t56650H Brassica oleracea HOM05D001605 ORTHO05D003014 5.1e-43 177.9 136 66.9
Os06g0208300 Oryza sativa ssp. japonica HOM05D001605 ORTHO05D003014 6.7e-43 177.6 150 60.0
Aa31LG9G14140 Aethionema arabicum HOM05D001605 ORTHO05D003014 2.0e-42 176.0 136 67.6
DCAR_001109 Daucus carota HOM05D001605 ORTHO05D003014 3.3e-42 175.3 151 62.9
ECA247G0063 Erigeron canadensis HOM05D001605 ORTHO05D003014 5.7e-42 174.5 134 67.9
Eucgr.F02745 Eucalyptus grandis HOM05D001605 ORTHO05D003014 7.4e-42 174.1 134 69.4
Nitab4.5_0010232g0010 Nicotiana tabacum HOM05D001605 ORTHO05D003014 9.7e-42 173.7 144 64.6
QL07p038796 Quercus lobata HOM05D001605 ORTHO05D003014 1.4e-40 169.9 123 69.9
QL07p039046 Quercus lobata HOM05D001605 ORTHO05D003014 1.4e-40 169.9 123 69.9
PGR042G1363 Punica granatum HOM05D001605 ORTHO05D003014 6.9e-40 167.5 147 60.5
HPP92_021877 Vanilla planifolia HOM05D001605 ORTHO05D003014 6.9e-40 167.5 151 60.3
EL10Ac1g01470 Beta vulgaris HOM05D001605 ORTHO05D003014 1.5e-39 166.4 175 55.4
vmacro01512 Vaccinium macrocarpon HOM05D001605 ORTHO05D003014 3.4e-39 165.2 153 56.9
Zm00001eb373500 Zea mays HOM05D001605 ORTHO05D003014 3.4e-39 165.2 150 55.3
Lsat_1_v5_gn_2_107160 Lactuca sativa HOM05D001605 ORTHO05D003014 4.5e-39 164.9 118 69.5
BcaC01g05804 Brassica carinata HOM05D001605 ORTHO05D003014 1.0e-38 163.7 139 62.6
C03p22230 Brassica napus HOM05D001605 ORTHO05D003014 1.0e-38 163.7 139 62.6
BolC3t14607H Brassica oleracea HOM05D001605 ORTHO05D003014 1.0e-38 163.7 139 62.6
BcaB01g03900 Brassica carinata HOM05D001605 ORTHO05D003014 1.4e-37 159.8 137 61.3
A03p19040 Brassica napus HOM05D001605 ORTHO05D003014 1.9e-37 159.5 134 61.9
CAN.G1045.24 Capsicum annuum HOM05D001605 ORTHO05D003014 1.9e-37 159.5 143 62.2
arahy.Tifrunner.gnm1.ann1.0IUR8P Arachis hypogaea HOM05D001605 ORTHO05D003014 5.5e-37 157.9 87 87.4
arahy.Tifrunner.gnm1.ann1.XYB1GT Arachis hypogaea HOM05D001605 ORTHO05D003014 5.5e-37 157.9 87 87.4
ECA240G4004 Erigeron canadensis HOM05D001605 ORTHO05D003014 5.5e-37 157.9 138 62.3
BraA03t11162Z Brassica rapa HOM05D001605 ORTHO05D003014 9.4e-37 157.1 137 60.6
Actinidia15162 Actinidia chinensis HOM05D001605 ORTHO05D003014 3.6e-36 155.2 154 55.8
Lsat_1_v5_gn_7_47540 Lactuca sativa HOM05D001605 ORTHO05D003014 5.1e-35 151.4 146 58.9
Rhsim12G0009500 Rhododendron simsii HOM05D001605 ORTHO05D003014 6.7e-35 151.0 141 58.9
Pp3c16_360 Physcomitrium patens HOM05D001605 ORTHO05D003014 3.3e-34 148.7 156 50.6
SEGI_21526 Sequoiadendron giganteum HOM05D001605 ORTHO05D003014 1.3e-33 146.7 122 61.5
AL4G30140 Arabidopsis lyrata HOM05D001605 ORTHO05D003014 3.7e-33 145.2 137 59.9
BraA09t38589Z Brassica rapa HOM05D001605 ORTHO05D003014 4.8e-33 144.8 114 64.0
AT2G34210 Arabidopsis thaliana HOM05D001605 ORTHO05D003014 1.8e-32 142.9 137 58.4
Sp4g16520 Schrenkiella parvula HOM05D001605 ORTHO05D003014 3.1e-32 142.1 116 61.2
Pp3c25_8110 Physcomitrium patens HOM05D001605 ORTHO05D003014 4.1e-32 141.7 156 48.7
Gohir.A05G241600 Gossypium hirsutum HOM05D001605 ORTHO05D003014 7.0e-32 141.0 115 60.9
Carub.0004s1584 Capsella rubella HOM05D001605 ORTHO05D003014 1.5e-31 139.8 134 58.2
Mapoly0027s0102 Marchantia polymorpha HOM05D001605 ORTHO05D003014 7.7e-31 137.5 158 48.1
AagrBONN_evm.TU.Sc2ySwM_369.275 Anthoceros agrestis HOM05D001605 ORTHO05D003014 8.0e-28 127.5 155 46.5
CBR_g27949 Chara braunii HOM05D001605 ORTHO05D003014 1.0e-27 127.1 137 47.4
QL12p037358 Quercus lobata HOM05D001605 ORTHO05D003014 1.2e-23 113.6 95 61.1
AT4G08360 Arabidopsis thaliana HOM05D001605 ORTHO05D003014 1.6e-23 113.2 105 59.0
CDE06G0467 Ceratophyllum demersum HOM05D001605 ORTHO05D003014 6.5e-22 107.8 92 58.7
Sc23g0005020 Simmondsia chinensis HOM05D001605 ORTHO05D003014 1.2e-20 103.6 104 51.9
SMO137G0201 Selaginella moellendorffii HOM05D001605 ORTHO05D003014 1.8e-19 99.8 125 43.2
SMO162G0003 Selaginella moellendorffii HOM05D001605 ORTHO05D003014 5.2e-19 98.2 128 42.2
Hma1.2p1_1530F.1_g289170 Hydrangea macrophylla HOM05D001605 ORTHO05D003014 8.8e-19 97.4 119 44.5
TPR.G18764 Trifolium pratense HOM05D001605 ORTHO05D003014 2.7e-12 75.9 54 68.5
Mapoly0084s0047 Marchantia polymorpha HOM05D001605 ORTHO05D003014 7.5e-10 67.8 105 33.3
MCO11G543 Micromonas commoda HOM05D001605 ORTHO05D003014 7.7e-07 57.8 96 36.5


User provided reference genes

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