Gene: Potri.004G162500
General Information
Structural Information
- Species Populus trichocarpa
- Gene Identifier Potri.004G162500
- Transcript Identifier Potri.004G162500.2
- Gene Type Coding gene
- Location Chr04 : 18227334-18234666 : positive
Gene Family Information
- ID HOM05D001605
- #Genes/#Species 401/100
- Phylogenetic origin
- ID ORTHO05D003014
- #Genes/#Species 248/99
- Phylogenetic origin
Gene Duplication Information
- Block Duplication Block duplicate
Labels
Identifiers
- id Potri.004G162500.v4.1
- pacid 42794611
- synonym POPTR_0004s16940
Descriptions
- Description K15172 - transcription elongation factor SPT5 (SUPT5H, SPT5)
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006357 | IEA | InterPro | regulation of transcription by RNA polymerase II | |
| GO:0032784 | IEA | InterPro | regulation of DNA-templated transcription, elongation | |
| GO:0006355 | IEA | InterPro | regulation of transcription, DNA-templated |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR041978 | Spt5, KOW domain repeat 5 |
| IPR039659 | Transcription elongation factor SPT5 |
| IPR041975 | Spt5, KOW domain repeat 2 |
| IPR014722 | Ribosomal protein L2, domain 2 |
| IPR041976 | Spt5, KOW domain repeat 3 |
| IPR006645 | NusG, N-terminal |
| IPR041973 | Spt5, KOW domain repeat 1 |
| IPR022581 | Spt5 transcription elongation factor, N-terminal |
| IPR036735 | NusG, N-terminal domain superfamily |
| IPR005824 | KOW |
| IPR008991 | Translation protein SH3-like domain superfamily |
| IPR017071 | Transcription elongation factor Spt5, eukaryote |
| IPR041977 | Spt5, KOW domain repeat 4 |
| IPR039385 | NGN domain, eukaryotic |
| IPR041980 | Spt5, KOW domain repeat 6 |
| IPR005100 | NGN domain |
| Mapman id | Description |
|---|---|
| 15.3.5.3.2 | RNA biosynthesis.RNA polymerase II-dependent transcription.transcription elongation.SPT4-SPT5 transcription elongation complex.component SPT5 |