Gene: Pp3c16_360

General Information

Structural Information

  • Species Physcomitrium patens
  • Gene Identifier Pp3c16_360
  • Transcript Identifier Pp3c16_360V3.4
  • Gene Type Coding gene
  • Location Chr16 : 171543-179982 : negative

Gene Family Information

  • ID HOM05D001605
  • #Genes/#Species 401/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • name Pp3c16_360V3.4
  • pacid 32984824
  • alias Phpat.016G001700
  • alias Pp1s144_35V6
  • alias Phypa_138209
  • uniprot A0A2K1J6J1

Descriptions

  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006357
IBA
IEA
GOA Databaseregulation of transcription by RNA polymerase II
GO:0006357
IEA
InterProregulation of transcription by RNA polymerase II
GO:0030422
ISO
PLAZA Integrative Orthologyproduction of siRNA involved in RNA interference AT5G04290
GO:0080188
ISO
PLAZA Integrative Orthologygene silencing by RNA-directed DNA methylation AT5G04290
GO:0006306
ISO
PLAZA Integrative OrthologyDNA methylation AT5G04290
GO:0016458
ISO
PLAZA Integrative Orthologygene silencing AT5G04290
GO:0006355
IEA
GOA Databaseregulation of transcription, DNA-templated
GO:0006355
IEA
InterProregulation of transcription, DNA-templated
GO:0006368
IBA
GOA Databasetranscription elongation from RNA polymerase II promoter
GO:0032784
IEA
GOA Databaseregulation of DNA-templated transcription, elongation
GO:0032784
IEA
InterProregulation of DNA-templated transcription, elongation
GO:0006412
IEA
GOA Databasetranslation

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003682
ISO
PLAZA Integrative Orthologychromatin binding AT5G04290
GO:0003723
ISO
PLAZA Integrative OrthologyRNA binding AT5G04290
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT5G04290
GO:0003729
IBA
GOA DatabasemRNA binding
GO:0003735
IEA
GOA Databasestructural constituent of ribosome

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005654
ISO
PLAZA Integrative Orthologynucleoplasm AT5G04290
GO:0032044
IBA
GOA DatabaseDSIF complex
GO:0005840
IEA
GOA Databaseribosome
GO:0005634
IEA
GOA Databasenucleus

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR005824 KOW
IPR036735 NusG, N-terminal domain superfamily
IPR041980 Spt5, KOW domain repeat 6
IPR014722 Ribosomal protein L2, domain 2
IPR041978 Spt5, KOW domain repeat 5
IPR005100 NGN domain
IPR041973 Spt5, KOW domain repeat 1
IPR039385 NGN domain, eukaryotic
IPR039659 Transcription elongation factor SPT5
IPR041976 Spt5, KOW domain repeat 3
IPR041975 Spt5, KOW domain repeat 2
IPR017071 Transcription elongation factor Spt5, eukaryote
IPR022581 Spt5 transcription elongation factor, N-terminal
IPR041977 Spt5, KOW domain repeat 4
IPR008991 Translation protein SH3-like domain superfamily
IPR006645 NusG, N-terminal
Mapman id Description
15.3.5.3.2 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription elongation.SPT4-SPT5 transcription elongation complex.component SPT5