Gene: Zm00001eb373500

General Information

Structural Information

  • Species Zea mays
  • Gene Identifier Zm00001eb373500
  • Transcript Identifier Zm00001eb373500_T001
  • Gene Type Coding gene
  • Location 9 : 10292048-10304860 : positive

Gene Family Information

  • ID HOM05D001605
  • #Genes/#Species 401/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Zm00001eb373500_T001
  • pid Zm00001eb373500_P001
  • uniprot A0A1D6NSH0
  • uniprot K7W575
  • uniprot A0A1D6NSG9
  • uniprot A0A1D6NSG8
  • uniprot A0A1D6NSG7
  • uniprot A0A1D6NSH8
  • uniprot A0A1D6NSG6
  • uniprot A0A1D6NSH7
  • uniprot A0A1D6NSH5
  • uniprot A0A1D6NSH3
  • entrez 103637903
  • refseq XM_008660913.1
  • refseq XP_008659135.1
  • V4_identifier Zm00001d044971

Descriptions

  • Description Zm00001e036210
  • Description Putative transcription elongation factor SPT5 homolog 1
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006414
IEA
GOA Databasetranslational elongation
GO:0006355
IEA
GOA Databaseregulation of transcription, DNA-templated
GO:0006355
IEA
InterProregulation of transcription, DNA-templated
GO:0006357
IBA
IEA
GOA Databaseregulation of transcription by RNA polymerase II
GO:0006357
IEA
InterProregulation of transcription by RNA polymerase II
GO:0006412
IEA
GOA Databasetranslation
GO:0032784
IEA
GOA Databaseregulation of DNA-templated transcription, elongation
GO:0032784
IEA
InterProregulation of DNA-templated transcription, elongation
GO:0006368
IBA
GOA Databasetranscription elongation from RNA polymerase II promoter

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003746
IEA
GOA Databasetranslation elongation factor activity
GO:0003735
IEA
GOA Databasestructural constituent of ribosome
GO:0003729
IBA
GOA DatabasemRNA binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus
GO:0005840
IEA
GOA Databaseribosome
GO:0032044
IBA
GOA DatabaseDSIF complex

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR014722 Ribosomal protein L2, domain 2
IPR006645 NusG, N-terminal
IPR041975 Spt5, KOW domain repeat 2
IPR041980 Spt5, KOW domain repeat 6
IPR041976 Spt5, KOW domain repeat 3
IPR005100 NGN domain
IPR022581 Spt5 transcription elongation factor, N-terminal
IPR036735 NusG, N-terminal domain superfamily
IPR008991 Translation protein SH3-like domain superfamily
IPR039385 NGN domain, eukaryotic
IPR041978 Spt5, KOW domain repeat 5
IPR017071 Transcription elongation factor Spt5, eukaryote
IPR005824 KOW
IPR041977 Spt5, KOW domain repeat 4
IPR041973 Spt5, KOW domain repeat 1
IPR039659 Transcription elongation factor SPT5
Mapman id Description
15.3.5.3.2 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription elongation.SPT4-SPT5 transcription elongation complex.component SPT5