Gene: MSTRG.1376
General Information
Structural Information
- Species Avicennia marina
- Gene Identifier MSTRG.1376
- Transcript Identifier MSTRG.1376.2
- Gene Type Coding gene
- Location ScioBoG_102833_HRSCAF_103052 : 8860405-8867934 : negative
Gene Family Information
- ID HOM05D001605
- #Genes/#Species 401/100
- Phylogenetic origin
- ID ORTHO05D003014
- #Genes/#Species 248/99
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
Descriptions
- tid MSTRG.1376.2
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006355 | IEA | InterPro | regulation of transcription, DNA-templated | |
| GO:0006357 | IEA | InterPro | regulation of transcription by RNA polymerase II | |
| GO:0032784 | IEA | InterPro | regulation of DNA-templated transcription, elongation | |
| GO:0016458 | ISO | PLAZA Integrative Orthology | gene silencing | AT5G04290 |
| GO:0006306 | ISO | PLAZA Integrative Orthology | DNA methylation | AT5G04290 |
| GO:0080188 | ISO | PLAZA Integrative Orthology | gene silencing by RNA-directed DNA methylation | AT5G04290 |
| GO:0030422 | ISO | PLAZA Integrative Orthology | production of siRNA involved in RNA interference | AT5G04290 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005515 | ISO | PLAZA Integrative Orthology | protein binding | AT5G04290 |
| GO:0003723 | ISO | PLAZA Integrative Orthology | RNA binding | AT5G04290 |
| GO:0003682 | ISO | PLAZA Integrative Orthology | chromatin binding | AT5G04290 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005654 | ISO | PLAZA Integrative Orthology | nucleoplasm | AT5G04290 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR041980 | Spt5, KOW domain repeat 6 |
| IPR006645 | NusG, N-terminal |
| IPR036735 | NusG, N-terminal domain superfamily |
| IPR022581 | Spt5 transcription elongation factor, N-terminal |
| IPR014722 | Ribosomal protein L2, domain 2 |
| IPR039659 | Transcription elongation factor SPT5 |
| IPR041977 | Spt5, KOW domain repeat 4 |
| IPR005824 | KOW |
| IPR008991 | Translation protein SH3-like domain superfamily |
| IPR041973 | Spt5, KOW domain repeat 1 |
| IPR005100 | NGN domain |
| IPR039385 | NGN domain, eukaryotic |
| IPR041978 | Spt5, KOW domain repeat 5 |
| IPR017071 | Transcription elongation factor Spt5, eukaryote |
| IPR041975 | Spt5, KOW domain repeat 2 |
| IPR041976 | Spt5, KOW domain repeat 3 |
| Mapman id | Description |
|---|---|
| 15.3.5.3.2 | RNA biosynthesis.RNA polymerase II-dependent transcription.transcription elongation.SPT4-SPT5 transcription elongation complex.component SPT5 |