Gene: AT2G34210

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT2G34210
  • Transcript Identifier AT2G34210.2
  • Gene Type Coding gene
  • Location Chr2 : 14445938-14450522 : positive

Gene Family Information

  • ID HOM05D001605
  • #Genes/#Species 401/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT2G34210.2
  • Alias SPT5-1
  • uniprot O80770

Descriptions

  • Description Transcription elongation factor Spt5
  • Computational description Transcription elongation factor Spt5; FUNCTIONS IN: transcription elongation regulator activity, structural constituent of ribosome, transcription initiation factor activity; INVOLVED IN: regulation of transcription from RNA polymerase II promoter, translation, positive regulation of RNA elongation from RNA polymerase II promoter; LOCATED IN: ribosome, intracellular; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: Translation protein SH3-like (InterPro:IPR008991), Transcription antitermination protein, NusG, N-terminal (InterPro:IPR006645), Transcription elongation factor Spt5 (InterPro:IPR017071), KOW (InterPro:IPR005824), Ribosomal protein L24/L26, conserved site (InterPro:IPR005825), Transcription elongation factor Spt5, NGN domain (InterPro:IPR005100); BEST Arabidopsis thaliana protein match is: global transcription factor group A2 (TAIR:AT4G08350.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006357
IBA
IEA
Gene Ontologyregulation of transcription by RNA polymerase II1
GO:0006357
IEA
InterProregulation of transcription by RNA polymerase II
GO:0006412
IEA
Gene Ontologytranslation
GO:0032784
IEA
Gene Ontologyregulation of DNA-templated transcription, elongation
GO:0032784
IEA
InterProregulation of DNA-templated transcription, elongation
GO:0006368
IBA
Gene Ontologytranscription elongation from RNA polymerase II promoter1
GO:0006355
IEA
GOA Databaseregulation of transcription, DNA-templated
GO:0006355
IEA
InterProregulation of transcription, DNA-templated

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003735
IEA
Gene Ontologystructural constituent of ribosome
GO:0003729
IBA
Gene OntologymRNA binding1

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
ISM
Gene Ontologynucleus
GO:0005840
IEA
Gene Ontologyribosome
GO:0032044
IBA
Gene OntologyDSIF complex1

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR022581 Spt5 transcription elongation factor, N-terminal
IPR036735 NusG, N-terminal domain superfamily
IPR008991 Translation protein SH3-like domain superfamily
IPR041976 Spt5, KOW domain repeat 3
IPR005824 KOW
IPR041975 Spt5, KOW domain repeat 2
IPR014722 Ribosomal protein L2, domain 2
IPR039659 Transcription elongation factor SPT5
IPR041973 Spt5, KOW domain repeat 1
IPR041980 Spt5, KOW domain repeat 6
IPR017071 Transcription elongation factor Spt5, eukaryote
IPR005100 NGN domain
IPR039385 NGN domain, eukaryotic
IPR006645 NusG, N-terminal
IPR041977 Spt5, KOW domain repeat 4
Mapman id Description
15.3.5.3.2 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription elongation.SPT4-SPT5 transcription elongation complex.component SPT5