Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G38645 Trifolium pratense HOM05D003203 ORTHO05D003526 7.5e-58 226.9 107 100.0
TPR.G22000 Trifolium pratense HOM05D003203 ORTHO05D003526 5.6e-37 157.5 107 77.6
TPR.G14912 Trifolium pratense HOM05D003203 ORTHO05D003526 2.1e-36 155.6 89 84.3
Psat7g223280 Pisum sativum HOM05D003203 ORTHO05D003526 9.0e-35 150.2 82 85.4
Lj3g0012673 Lotus japonicus HOM05D003203 ORTHO05D003526 1.9e-32 142.5 82 79.3
Lj3g0020808 Lotus japonicus HOM05D003203 ORTHO05D003526 1.9e-32 142.5 82 79.3
Ca_19241_v3 Cicer arietinum L. HOM05D003203 ORTHO05D003526 2.4e-32 142.1 82 79.3
Lalb_Chr03g0027111 Lupinus albus HOM05D003203 ORTHO05D003526 3.2e-32 141.7 89 71.9
Medtr4g060795 Medicago truncatula HOM05D003203 ORTHO05D003526 7.1e-32 140.6 82 78.0
Glyma.11G152960 Glycine max HOM05D003203 ORTHO05D003526 1.6e-31 139.4 89 73.0
Phvul.011G072500 Phaseolus vulgaris HOM05D003203 ORTHO05D003526 7.8e-31 137.1 89 70.8
CANSAT54G1869 Cannabis sativa HOM05D003203 ORTHO05D003526 1.1e-29 133.3 106 59.4
arahy.Tifrunner.gnm1.ann1.GJ7521 Arachis hypogaea HOM05D003203 ORTHO05D003526 4.3e-29 131.3 89 68.5
Dinv32789 Davidia involucrata HOM05D003203 ORTHO05D003526 7.3e-29 130.6 89 66.3
Eucgr.B02467 Eucalyptus grandis HOM05D003203 ORTHO05D003526 1.3e-28 129.8 106 59.4
QL01p037166 Quercus lobata HOM05D003203 ORTHO05D003526 2.1e-28 129.0 90 67.8
VMungo1127G1096 Vigna mungo HOM05D003203 ORTHO05D003526 2.1e-28 129.0 82 70.7
arahy.Tifrunner.gnm1.ann1.DWB64P Arachis hypogaea HOM05D003203 ORTHO05D003526 2.8e-28 128.6 89 66.3
TWI31G0332 Tripterygium wilfordii HOM05D003203 ORTHO05D003526 3.6e-28 128.3 89 64.0
Manes.11G141000 Manihot esculenta HOM05D003203 ORTHO05D003526 1.1e-27 126.7 89 60.7
Potri.016G083100 Populus trichocarpa HOM05D003203 ORTHO05D003526 1.1e-27 126.7 82 67.1
Sabra16G0090500 Salix brachista HOM05D003203 ORTHO05D003526 1.4e-27 126.3 82 65.9
CSS0047004 Camellia sinensis var. sinensis HOM05D003203 ORTHO05D003526 1.8e-27 125.9 81 69.1
COL.COLO4_25248 Corchorus olitorius HOM05D003203 ORTHO05D003526 1.8e-27 125.9 89 66.3
Duzib168G0563 Durio zibethinus HOM05D003203 ORTHO05D003526 1.8e-27 125.9 89 67.4
FvH4_4g02320 Fragaria vesca HOM05D003203 ORTHO05D003526 1.8e-27 125.9 82 68.3
MD11G1129800 Malus domestica HOM05D003203 ORTHO05D003526 1.8e-27 125.9 89 64.0
GSVIVG01025133001 Vitis vinifera HOM05D003203 ORTHO05D003526 3.1e-27 125.2 89 65.2
Ciclev10027702m.g Citrus clementina HOM05D003203 ORTHO05D003526 4.0e-27 124.8 89 64.0
CiPaw.13G106900 Carya illinoinensis HOM05D003203 ORTHO05D003526 5.3e-27 124.4 89 65.2
Lj2C1036G7 Lonicera japonica HOM05D003203 ORTHO05D003526 5.3e-27 124.4 89 60.7
TAR636G0568 Trochodendron aralioides HOM05D003203 ORTHO05D003526 5.3e-27 124.4 89 61.8
Thecc.09G260300 Theobroma cacao HOM05D003203 ORTHO05D003526 6.9e-27 124.0 89 65.2
FAN12G0401 Fragaria x ananassa HOM05D003203 ORTHO05D003526 1.2e-26 123.2 82 67.1
FAN16G3448 Fragaria x ananassa HOM05D003203 ORTHO05D003526 1.2e-26 123.2 89 67.4
Peaxi162Scf00389g00932 Petunia axillaris HOM05D003203 ORTHO05D003526 1.5e-26 122.9 106 52.8
Cpa.g.sc139.65 Carica papaya HOM05D003203 ORTHO05D003526 2.0e-26 122.5 89 60.7
Haze_23916 Corylus avellana HOM05D003203 ORTHO05D003526 2.0e-26 122.5 89 60.7
Gohir.D05G077500 Gossypium hirsutum HOM05D003203 ORTHO05D003526 2.0e-26 122.5 89 65.2
Sc15g0001570 Simmondsia chinensis HOM05D003203 ORTHO05D003526 2.0e-26 122.5 89 65.2
MELO3C005030.2 Cucumis melo HOM05D003203 ORTHO05D003526 2.6e-26 122.1 89 65.2
CsaV3_1G013020 Cucumis sativus L. HOM05D003203 ORTHO05D003526 2.6e-26 122.1 89 65.2
HanXRQChr13g0401461 Helianthus annuus HOM05D003203 ORTHO05D003526 2.6e-26 122.1 89 59.6
PGR102G2647 Punica granatum HOM05D003203 ORTHO05D003526 2.6e-26 122.1 89 65.2
AUR62025015 Chenopodium quinoa HOM05D003203 ORTHO05D003526 3.4e-26 121.7 89 62.9
FvH4_3g33360 Fragaria vesca HOM05D003203 ORTHO05D003526 3.4e-26 121.7 89 67.4
FAN11G3892 Fragaria x ananassa HOM05D003203 ORTHO05D003526 3.4e-26 121.7 89 67.4
Aqoxy4G03208 Aquilegia oxysepala HOM05D003203 ORTHO05D003526 5.8e-26 120.9 89 60.7
Migut.D02182 Erythranthe guttata HOM05D003203 ORTHO05D003526 5.8e-26 120.9 89 60.7
Oeu005910.3 Olea europaea HOM05D003203 ORTHO05D003526 5.8e-26 120.9 89 60.7
Solyc11g072430.3 Solanum lycopersicum HOM05D003203 ORTHO05D003526 5.8e-26 120.9 89 59.6
Sopen11g030070 Solanum pennellii HOM05D003203 ORTHO05D003526 5.8e-26 120.9 89 59.6
CAN.G352.40 Capsicum annuum HOM05D003203 ORTHO05D003526 7.6e-26 120.6 106 52.8
Cfa011365 Carpinus fangiana HOM05D003203 ORTHO05D003526 7.6e-26 120.6 89 58.4
ClCG03G002340 Citrullus lanatus HOM05D003203 ORTHO05D003526 7.6e-26 120.6 89 65.2
Gorai.009G078900 Gossypium raimondii HOM05D003203 ORTHO05D003526 7.6e-26 120.6 89 65.2
Nitab4.5_0001802g0140 Nicotiana tabacum HOM05D003203 ORTHO05D003526 9.9e-26 120.2 106 50.9
RcHm_v2.0_Chr5g0060751 Rosa chinensis HOM05D003203 ORTHO05D003526 9.9e-26 120.2 89 62.9
SHI27628 Sapria himalayana HOM05D003203 ORTHO05D003526 9.9e-26 120.2 89 61.8
SGA_v2.0_scaffold97G29171 Striga asiatica HOM05D003203 ORTHO05D003526 9.9e-26 120.2 103 56.3
Atru.chr3.3693 Acer truncatum HOM05D003203 ORTHO05D003526 1.3e-25 119.8 82 62.2
Gohir.A05G074700 Gossypium hirsutum HOM05D003203 ORTHO05D003526 1.3e-25 119.8 89 64.0
Nn2g13009 Nelumbo nucifera HOM05D003203 ORTHO05D003526 1.3e-25 119.8 80 66.2
MSTRG.21144 Avicennia marina HOM05D003203 ORTHO05D003526 1.7e-25 119.4 89 59.6
Lj1C185T11 Lonicera japonica HOM05D003203 ORTHO05D003526 1.7e-25 119.4 89 59.6
Prupe.6G094700 Prunus persica HOM05D003203 ORTHO05D003526 2.2e-25 119.0 90 62.2
BcaC07g41968 Brassica carinata HOM05D003203 ORTHO05D003526 2.9e-25 118.6 82 65.9
C08p50260 Brassica napus HOM05D003203 ORTHO05D003526 2.9e-25 118.6 82 65.9
BolC8t52555H Brassica oleracea HOM05D003203 ORTHO05D003526 2.9e-25 118.6 82 65.9
THA.LOC104815752 Tarenaya hassleriana HOM05D003203 ORTHO05D003526 2.9e-25 118.6 89 58.4
Rhsim01G0220300 Rhododendron simsii HOM05D003203 ORTHO05D003526 3.8e-25 118.2 106 55.7
RcHm_v2.0_Chr4g0389641 Rosa chinensis HOM05D003203 ORTHO05D003526 3.8e-25 118.2 82 63.4
Migut.N02091 Erythranthe guttata HOM05D003203 ORTHO05D003526 4.9e-25 117.9 89 59.6
SpUn0400_0010 Schrenkiella parvula HOM05D003203 ORTHO05D003526 4.9e-25 117.9 82 62.2
A09p66110 Brassica napus HOM05D003203 ORTHO05D003526 6.4e-25 117.5 82 64.6
BraA09t41949Z Brassica rapa HOM05D003203 ORTHO05D003526 6.4e-25 117.5 82 64.6
Nitab4.5_0002129g0110 Nicotiana tabacum HOM05D003203 ORTHO05D003526 6.4e-25 117.5 106 50.0
Cc01_g11550 Coffea canephora HOM05D003203 ORTHO05D003526 8.4e-25 117.1 89 58.4
BcaC07g42504 Brassica carinata HOM05D003203 ORTHO05D003526 1.1e-24 116.7 82 64.6
DCAR_006042 Daucus carota HOM05D003203 ORTHO05D003526 1.1e-24 116.7 89 56.2
TAR633G1300 Trochodendron aralioides HOM05D003203 ORTHO05D003526 1.4e-24 116.3 89 59.6
Lj1A185G36 Lonicera japonica HOM05D003203 ORTHO05D003526 1.9e-24 115.9 89 58.4
HPP92_010183 Vanilla planifolia HOM05D003203 ORTHO05D003526 1.9e-24 115.9 89 60.7
Zm00001eb302520 Zea mays HOM05D003203 ORTHO05D003526 1.9e-24 115.9 89 57.3
Aa31sc36G120 Aethionema arabicum HOM05D003203 ORTHO05D003526 3.2e-24 115.2 82 62.2
Thhalv10006605m.g Eutrema salsugineum HOM05D003203 ORTHO05D003526 4.2e-24 114.8 82 62.2
FAN22G0069 Fragaria x ananassa HOM05D003203 ORTHO05D003526 4.2e-24 114.8 82 63.4
ATR1159G092 Amborella trichopoda HOM05D003203 ORTHO05D003526 5.4e-24 114.4 89 59.6
Sed0015984 Sechium edule HOM05D003203 ORTHO05D003526 5.4e-24 114.4 89 60.7
Lsat_1_v5_gn_6_26241 Lactuca sativa HOM05D003203 ORTHO05D003526 1.2e-23 113.2 89 55.1
Aqoxy3G02869 Aquilegia oxysepala HOM05D003203 ORTHO05D003526 1.6e-23 112.8 89 53.9
EL10Ac9g22449 Beta vulgaris HOM05D003203 ORTHO05D003526 1.6e-23 112.8 89 57.3
AL6G53580 Arabidopsis lyrata HOM05D003203 ORTHO05D003526 2.1e-23 112.5 82 63.4
AUR62006513 Chenopodium quinoa HOM05D003203 ORTHO05D003526 2.1e-23 112.5 89 58.4
PSO063G5461 Papaver somniferum HOM05D003203 ORTHO05D003526 2.1e-23 112.5 106 51.9
AL7G46970 Arabidopsis lyrata HOM05D003203 ORTHO05D003526 2.7e-23 112.1 82 63.4
SalBow3G4618 Salvia bowleyana HOM05D003203 ORTHO05D003526 2.7e-23 112.1 86 59.3
Carub.0001s0725 Capsella rubella HOM05D003203 ORTHO05D003526 4.6e-23 111.3 89 58.4
Lsat_1_v5_gn_1_93381 Lactuca sativa HOM05D003203 ORTHO05D003526 4.6e-23 111.3 89 55.1
BcaB02g06702 Brassica carinata HOM05D003203 ORTHO05D003526 6.0e-23 110.9 82 56.1
A06p05020 Brassica napus HOM05D003203 ORTHO05D003526 7.9e-23 110.5 82 58.5
BraA06t23708Z Brassica rapa HOM05D003203 ORTHO05D003526 7.9e-23 110.5 82 58.5
PSO339G5999 Papaver somniferum HOM05D003203 ORTHO05D003526 7.9e-23 110.5 106 50.0
BcaC05g24708 Brassica carinata HOM05D003203 ORTHO05D003526 1.0e-22 110.2 82 58.5
Carub.0011s0009 Capsella rubella HOM05D003203 ORTHO05D003526 3.0e-22 108.6 89 56.2
SalBow6G0781 Salvia bowleyana HOM05D003203 ORTHO05D003526 3.0e-22 108.6 86 58.1
Os07g0191700 Oryza sativa ssp. japonica HOM05D003203 ORTHO05D003526 3.9e-22 108.2 90 54.4
vmacro14071 Vaccinium macrocarpon HOM05D003203 ORTHO05D003526 6.7e-22 107.5 89 56.2
C05p05960 Brassica napus HOM05D003203 ORTHO05D003526 1.1e-21 106.7 82 57.3
BolC5t29358H Brassica oleracea HOM05D003203 ORTHO05D003526 1.1e-21 106.7 82 57.3
AT1G07910 Arabidopsis thaliana HOM05D003203 ORTHO05D003526 1.5e-21 106.3 82 59.8
DCAR_024905 Daucus carota HOM05D003203 ORTHO05D003526 1.5e-21 106.3 89 52.8
Lsat_1_v5_gn_4_85140 Lactuca sativa HOM05D003203 ORTHO05D003526 3.3e-21 105.1 89 50.6
CARHR007720 Cardamine hirsuta HOM05D003203 ORTHO05D003526 5.6e-21 104.4 82 59.8
Nn2g10680 Nelumbo nucifera HOM05D003203 ORTHO05D003526 1.6e-20 102.8 89 52.8
PSO765G0203 Papaver somniferum HOM05D003203 ORTHO05D003526 2.8e-20 102.1 89 48.3
unitig_736.g22420 Utricularia gibba HOM05D003203 ORTHO05D003526 3.7e-20 101.7 96 52.1
ECA233G2891 Erigeron canadensis HOM05D003203 ORTHO05D003526 1.8e-19 99.4 83 55.4
CDE07G0291 Ceratophyllum demersum HOM05D003203 ORTHO05D003526 3.1e-19 98.6 78 55.1
Nitab4.5_0004347g0030 Nicotiana tabacum HOM05D003203 ORTHO05D003526 2.1e-15 85.9 73 53.4
SEGI_33151 Sequoiadendron giganteum HOM05D003203 ORTHO05D003526 2.7e-15 85.5 106 39.6
QL11p006896 Quercus lobata HOM05D003203 ORTHO05D003526 6.7e-14 80.9 58 65.5
QL11p006401 Quercus lobata HOM05D003203 ORTHO05D003526 1.1e-13 80.1 57 66.7
QL11p006907 Quercus lobata HOM05D003203 ORTHO05D003526 1.1e-13 80.1 58 65.5
vmacro14464 Vaccinium macrocarpon HOM05D003203 ORTHO05D003526 1.5e-13 79.7 54 66.7
RcHm_v2.0_Chr1g0326771 Rosa chinensis HOM05D003203 ORTHO05D003526 4.8e-12 74.7 54 64.8
AL1G18200 Arabidopsis lyrata HOM05D003203 ORTHO05D003526 5.3e-11 71.2 82 45.1
Lsat_1_v5_gn_2_120 Lactuca sativa HOM05D003203 ORTHO05D003526 1.5e-10 69.7 79 43.0
Lsat_1_v5_gn_6_107780 Lactuca sativa HOM05D004503 ORTHO05D003526 1.7e-09 66.2 96 35.4
Pp3c27_2850 Physcomitrium patens HOM05D003203 ORTHO05D003526 1.1e-08 63.5 74 43.2
AagrBONN_evm.TU.Sc2ySwM_244.3 Anthoceros agrestis HOM05D003203 ORTHO05D003526 5.5e-08 61.2 74 37.8
AagrBONN_evm.TU.Sc2ySwM_245.2 Anthoceros agrestis HOM05D003203 ORTHO05D003526 5.5e-08 61.2 74 37.8
AagrBONN_evm.TU.Sc2ySwM_246.1 Anthoceros agrestis HOM05D003203 ORTHO05D003526 5.5e-08 61.2 74 37.8
AagrBONN_evm.TU.Sc2ySwM_341.2 Anthoceros agrestis HOM05D003203 ORTHO05D003526 5.5e-08 61.2 74 37.8
AagrBONN_evm.TU.Sc2ySwM_362.2654 Anthoceros agrestis HOM05D003203 ORTHO05D003526 5.5e-08 61.2 74 37.8
AagrBONN_evm.TU.Sc2ySwM_117.4029 Anthoceros agrestis HOM05D003203 ORTHO05D003526 1.6e-07 59.7 74 37.8
AagrBONN_evm.TU.Sc2ySwM_117.4032 Anthoceros agrestis HOM05D003203 ORTHO05D003526 2.1e-07 59.3 74 36.5
AagrBONN_evm.TU.Sc2ySwM_117.4033 Anthoceros agrestis HOM05D003203 ORTHO05D003526 2.1e-07 59.3 74 36.5
AagrBONN_evm.TU.Sc2ySwM_117.4034 Anthoceros agrestis HOM05D003203 ORTHO05D003526 2.1e-07 59.3 74 36.5
AagrBONN_evm.TU.Sc2ySwM_341.1 Anthoceros agrestis HOM05D003203 ORTHO05D003526 2.1e-07 59.3 74 36.5
Mapoly0005s0012 Marchantia polymorpha HOM05D003203 ORTHO05D003526 7.9e-07 57.4 82 34.1
arahy.Tifrunner.gnm1.ann1.VS5L85 Arachis hypogaea HOM05D003203 ORTHO05D003526 3.0e-06 55.5 35 68.6


User provided reference genes

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