Gene: Solyc11g072430.3

General Information

Structural Information

  • Species Solanum lycopersicum
  • Gene Identifier Solyc11g072430.3
  • Transcript Identifier Solyc11g072430.3.1
  • Gene Type Coding gene
  • Location SL4.0ch11 : 53658162-53677156 : negative

Gene Family Information

  • ID HOM05D003203
  • #Genes/#Species 213/97
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Solyc11g072430.3.1
  • uniprot A0A3Q7J1E5
  • gene_id Solyc11g072430

Descriptions

  • Description RNAligase (AHRD V3.3 *** AT1G07910.2)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006388
IEA
GOA DatabasetRNA splicing, via endonucleolytic cleavage and ligation
GO:0006388
IEA
InterProtRNA splicing, via endonucleolytic cleavage and ligation
GO:0010928
ISO
PLAZA Integrative Orthologyregulation of auxin mediated signaling pathway AT1G07910
GO:0030968
ISO
PLAZA Integrative Orthologyendoplasmic reticulum unfolded protein response AT1G07910
GO:0042245
ISO
PLAZA Integrative OrthologyRNA repair AT1G07910

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003972
IEA
GOA DatabaseRNA ligase (ATP) activity
GO:0003972
IEA
InterProRNA ligase (ATP) activity
GO:0051731
ISO
PLAZA Integrative Orthologypolynucleotide 5'-hydroxyl-kinase activity AT1G07910
GO:0003729
ISO
PLAZA Integrative OrthologymRNA binding AT1G07910
GO:0004113
ISO
PLAZA Integrative Orthology2',3'-cyclic-nucleotide 3'-phosphodiesterase activity AT1G07910

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005844
ISO
PLAZA Integrative Orthologypolysome AT1G07910
GO:0005737
ISO
PLAZA Integrative Orthologycytoplasm AT1G07910

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR038837 tRNA ligase 1
Mapman id Description
35.1 not assigned.annotated