Gene: Solyc11g072430.3
General Information
Structural Information
- Species Solanum lycopersicum
- Gene Identifier Solyc11g072430.3
- Transcript Identifier Solyc11g072430.3.1
- Gene Type Coding gene
- Location SL4.0ch11 : 53658162-53677156 : negative
Gene Family Information
- ID HOM05D003203
- #Genes/#Species 213/97
- Phylogenetic origin
- ID ORTHO05D003526
- #Genes/#Species 218/97
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid Solyc11g072430.3.1
- uniprot A0A3Q7J1E5
- gene_id Solyc11g072430
Descriptions
- Description RNAligase (AHRD V3.3 *** AT1G07910.2)
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
GO term | Evidence(s) | Provider(s) | Description | Source(s) |
---|---|---|---|---|
GO:0006388 | IEA | GOA Database | tRNA splicing, via endonucleolytic cleavage and ligation | |
GO:0006388 | IEA | InterPro | tRNA splicing, via endonucleolytic cleavage and ligation | |
GO:0010928 | ISO | PLAZA Integrative Orthology | regulation of auxin mediated signaling pathway | AT1G07910 |
GO:0030968 | ISO | PLAZA Integrative Orthology | endoplasmic reticulum unfolded protein response | AT1G07910 |
GO:0042245 | ISO | PLAZA Integrative Orthology | RNA repair | AT1G07910 |
Molecular Function
GO term | Evidence(s) | Provider(s) | Description | Source(s) |
---|---|---|---|---|
GO:0003972 | IEA | GOA Database | RNA ligase (ATP) activity | |
GO:0003972 | IEA | InterPro | RNA ligase (ATP) activity | |
GO:0051731 | ISO | PLAZA Integrative Orthology | polynucleotide 5'-hydroxyl-kinase activity | AT1G07910 |
GO:0003729 | ISO | PLAZA Integrative Orthology | mRNA binding | AT1G07910 |
GO:0004113 | ISO | PLAZA Integrative Orthology | 2',3'-cyclic-nucleotide 3'-phosphodiesterase activity | AT1G07910 |
Cellular Component
GO term | Evidence(s) | Provider(s) | Description | Source(s) |
---|---|---|---|---|
GO:0005844 | ISO | PLAZA Integrative Orthology | polysome | AT1G07910 |
GO:0005737 | ISO | PLAZA Integrative Orthology | cytoplasm | AT1G07910 |
Color Legend
Experimental Evidence |
Computational Reviewed Evidence |
Electronic Evidence |
InterPro | Description |
---|---|
IPR038837 | tRNA ligase 1 |
Mapman id | Description |
---|---|
35.1 | not assigned.annotated |