Gene: COL.COLO4_25248

General Information

Structural Information

  • Species Corchorus olitorius
  • Gene Identifier COL.COLO4_25248
  • Transcript Identifier COL.rna23981
  • Gene Type Coding gene
  • Location AWUE01018977.1 : 2821-23650 : negative

Gene Family Information

  • ID HOM05D003203
  • #Genes/#Species 213/97
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid rna23981
  • GenBank OMO77264.1
  • id gene25220
  • gene_name COLO4_25248
  • uniprot A0A1R3I3W7

Descriptions

  • Description hypothetical protein
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006388
IEA
GOA DatabasetRNA splicing, via endonucleolytic cleavage and ligation
GO:0006388
IEA
InterProtRNA splicing, via endonucleolytic cleavage and ligation
GO:0010928
ISO
PLAZA Integrative Orthologyregulation of auxin mediated signaling pathway AT1G07910
GO:0030968
ISO
PLAZA Integrative Orthologyendoplasmic reticulum unfolded protein response AT1G07910
GO:0042245
ISO
PLAZA Integrative OrthologyRNA repair AT1G07910

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003972
IEA
GOA DatabaseRNA ligase (ATP) activity
GO:0003972
IEA
InterProRNA ligase (ATP) activity
GO:0005524
IEA
GOA DatabaseATP binding
GO:0005524
IEA
InterProATP binding
GO:0051731
ISO
PLAZA Integrative Orthologypolynucleotide 5'-hydroxyl-kinase activity AT1G07910
GO:0003729
ISO
PLAZA Integrative OrthologymRNA binding AT1G07910
GO:0004113
ISO
PLAZA Integrative Orthology2',3'-cyclic-nucleotide 3'-phosphodiesterase activity AT1G07910

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005844
ISO
PLAZA Integrative Orthologypolysome AT1G07910
GO:0005737
ISO
PLAZA Integrative Orthologycytoplasm AT1G07910

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR038837 tRNA ligase 1
IPR029058 Alpha/Beta hydrolase fold
IPR000073 Alpha/beta hydrolase fold-1
IPR015965 tRNA ligase, phosphodiesterase
Mapman id Description
35.1 not assigned.annotated