Gene: AT1G07910

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT1G07910
  • Transcript Identifier AT1G07910.1
  • Gene Type Coding gene
  • Location Chr1 : 2446712-2454386 : positive

Gene Family Information

  • ID HOM05D003203
  • #Genes/#Species 213/97
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT1G07910.1
  • symbol RNL
  • Alias ATRNL,ARABIDOPSIS THALIANA RNA LIGASE,AtRLG1,AtRLG1
  • uniprot Q0WL81

Descriptions

  • Description RNAligase
  • Computational description RNAligase (RNL); CONTAINS InterPro DOMAIN/s: tRNA ligase, phosphodiesterase, fungi (InterPro:IPR015965); Has 209 Blast hits to 196 proteins in 23 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 3; Plants - 200; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009734
IEA
GOA Databaseauxin-activated signaling pathway
GO:0008152
IEA
GOA Databasemetabolic process
GO:0016310
IEA
GOA Databasephosphorylation
GO:0006388
IEA
GOA DatabasetRNA splicing, via endonucleolytic cleavage and ligation
GO:0006388
IDA, IMP
TAS
Gene OntologytRNA splicing, via endonucleolytic cleavage and ligation1 2
GO:0006388
IEA
InterProtRNA splicing, via endonucleolytic cleavage and ligation
GO:0042245
IDA
IEA
GOA DatabaseRNA repair
GO:0030968
IDA
Gene Ontologyendoplasmic reticulum unfolded protein response3
GO:0010928
IMP
Gene Ontologyregulation of auxin mediated signaling pathway4
GO:0090305
IEA
GOA Databasenucleic acid phosphodiester bond hydrolysis
GO:0006412
IEA
GOA Databasetranslation
GO:0008033
IEA
GOA DatabasetRNA processing

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0046872
IEA
GOA Databasemetal ion binding
GO:0016874
IEA
GOA Databaseligase activity
GO:0003824
IEA
GOA Databasecatalytic activity
GO:0003723
IEA
GOA DatabaseRNA binding
GO:0000166
IEA
GOA Databasenucleotide binding
GO:0016787
IEA
GOA Databasehydrolase activity
GO:0004519
IEA
GOA Databaseendonuclease activity
GO:0004518
IEA
GOA Databasenuclease activity
GO:0016740
IEA
GOA Databasetransferase activity
GO:0005524
IEA
GOA DatabaseATP binding
GO:0005524
IEA
InterProATP binding
GO:0016301
IEA
GOA Databasekinase activity
GO:0003972
IEA
GOA DatabaseRNA ligase (ATP) activity
GO:0003972
IDA, IGI
Gene OntologyRNA ligase (ATP) activity1 2
GO:0003972
IEA
InterProRNA ligase (ATP) activity
GO:0004113
IGI
Gene Ontology2',3'-cyclic-nucleotide 3'-phosphodiesterase activity2
GO:0051731
IGI
Gene Ontologypolynucleotide 5'-hydroxyl-kinase activity2
GO:0003729
IDA
Gene OntologymRNA binding3

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005844
IDA
GOA Databasepolysome
GO:0005737
IEA
GOA Databasecytoplasm
GO:0005737
IDA
Gene Ontologycytoplasm3
GO:0009507
ISM
Gene Ontologychloroplast
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
ISM
Gene Ontologynucleus

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR015965 tRNA ligase, phosphodiesterase
IPR038837 tRNA ligase 1
Mapman id Description
35.1 not assigned.annotated