Gene: Sopen11g030070

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen11g030070
  • Transcript Identifier Sopen11g030070.1
  • Gene Type Coding gene
  • Location Spenn-ch11 : 65438564-65468306 : negative

Gene Family Information

  • ID HOM05D003203
  • #Genes/#Species 213/97
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen11g030070.1

Descriptions

  • Description Encodes a tRNA ligase that resembles the yeast Trl1 RNA ligase in structure and function but very different in sequence. Like Trl1, AtRNL consists of two domains ó an N-terminal ligase component and a C-terminal 5-kinase/2,3-cyclic phosphodiesterase (CPD) componentó that can function in tRNA splicing in vivo when expressed as separate polypeptides. Requires a 2-PO4 end for tRNA splicing in vivo. | RNAligase (RNL) | CONTAINS InterPro DOMAIN/s: tRNA ligase, phosphodiesterase, fungi
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006388
IEA
InterProtRNA splicing, via endonucleolytic cleavage and ligation
GO:0010928
ISO
PLAZA Integrative Orthologyregulation of auxin mediated signaling pathway AT1G07910
GO:0030968
ISO
PLAZA Integrative Orthologyendoplasmic reticulum unfolded protein response AT1G07910
GO:0042245
ISO
PLAZA Integrative OrthologyRNA repair AT1G07910

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003972
IEA
InterProRNA ligase (ATP) activity
GO:0051731
ISO
PLAZA Integrative Orthologypolynucleotide 5'-hydroxyl-kinase activity AT1G07910
GO:0003729
ISO
PLAZA Integrative OrthologymRNA binding AT1G07910
GO:0004113
ISO
PLAZA Integrative Orthology2',3'-cyclic-nucleotide 3'-phosphodiesterase activity AT1G07910

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005844
ISO
PLAZA Integrative Orthologypolysome AT1G07910
GO:0005737
ISO
PLAZA Integrative Orthologycytoplasm AT1G07910

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR038837 tRNA ligase 1
Mapman id Description
35.1 not assigned.annotated