Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR629G2468 Trochodendron aralioides HOM05D004484 ORTHO05D005370 0.0e+00 1356.3 680 100.0
Nn1g01233 Nelumbo nucifera HOM05D004484 ORTHO05D005370 0.0e+00 1082.4 670 79.9
Dinv32377 Davidia involucrata HOM05D004484 ORTHO05D005370 6.0e-310 1067.0 670 78.7
Aqoxy5G00403 Aquilegia oxysepala HOM05D004484 ORTHO05D005370 6.2e-299 1030.4 667 76.2
Prupe.2G145600 Prunus persica HOM05D004484 ORTHO05D005370 2.0e-297 1025.4 670 75.5
MBI12_g10758_MAGBIO Magnolia biondii HOM05D004484 ORTHO05D005370 1.9e-295 1018.8 702 72.9
CiPaw.01G262000 Carya illinoinensis HOM05D004484 ORTHO05D005370 1.6e-294 1015.8 670 73.6
MD07G1121000 Malus domestica HOM05D004484 ORTHO05D005370 1.0e-293 1013.1 670 74.9
PSO478G5008 Papaver somniferum HOM05D004484 ORTHO05D005370 8.7e-293 1010.0 671 74.8
Hma1.2p1_0086F.1_g044870 Hydrangea macrophylla HOM05D004484 ORTHO05D005370 1.1e-292 1009.6 666 75.2
GSVIVG01027610001 Vitis vinifera HOM05D004484 ORTHO05D005370 4.3e-292 1007.7 654 75.7
Lj7A528T57 Lonicera japonica HOM05D004484 ORTHO05D005370 1.3e-291 1006.1 679 74.7
QL08p052472 Quercus lobata HOM05D004484 ORTHO05D005370 9.0e-290 1000.0 670 73.4
Oeu055487.1 Olea europaea HOM05D004484 ORTHO05D005370 4.2e-287 991.1 670 72.5
Cc02_g36700 Coffea canephora HOM05D004484 ORTHO05D005370 1.2e-286 989.6 670 73.3
Atru.chr5.309 Acer truncatum HOM05D004484 ORTHO05D005370 7.9e-286 986.9 667 72.1
Sc02g0002590 Simmondsia chinensis HOM05D004484 ORTHO05D005370 2.5e-284 981.9 671 71.2
TWI23G0227 Tripterygium wilfordii HOM05D004484 ORTHO05D005370 4.3e-284 981.1 670 72.2
CSS0036976 Camellia sinensis var. sinensis HOM05D004484 ORTHO05D005370 7.4e-284 980.3 676 72.9
Haze_16815 Corylus avellana HOM05D004484 ORTHO05D005370 1.1e-282 976.5 727 67.7
ECA234G1700 Erigeron canadensis HOM05D004484 ORTHO05D005370 1.2e-281 973.0 671 71.5
Ca_19886_v3 Cicer arietinum L. HOM05D004484 ORTHO05D005370 2.0e-281 972.2 670 72.7
FvH4_7g11900 Fragaria vesca HOM05D004484 ORTHO05D005370 7.6e-281 970.3 670 70.9
FAN01G0628 Fragaria x ananassa HOM05D004484 ORTHO05D005370 1.7e-280 969.1 674 70.3
Nitab4.5_0000457g0330 Nicotiana tabacum HOM05D004484 ORTHO05D005370 2.2e-280 968.8 670 70.6
DCAR_015907 Daucus carota HOM05D004484 ORTHO05D005370 3.8e-280 968.0 668 71.6
FAN10G1483 Fragaria x ananassa HOM05D004484 ORTHO05D005370 3.2e-279 964.9 674 70.5
Potri.014G069700 Populus trichocarpa HOM05D004484 ORTHO05D005370 7.2e-279 963.8 670 71.8
CAN.G388.13 Capsicum annuum HOM05D004484 ORTHO05D005370 1.2e-278 963.0 667 70.2
FAN06G1787 Fragaria x ananassa HOM05D004484 ORTHO05D005370 1.2e-278 963.0 674 70.3
FAN06G3319 Fragaria x ananassa HOM05D004484 ORTHO05D005370 1.6e-278 962.6 674 70.2
Lalb_Chr13g0291731 Lupinus albus HOM05D004484 ORTHO05D005370 2.7e-278 961.8 670 71.8
FAN10G2369 Fragaria x ananassa HOM05D004484 ORTHO05D005370 7.9e-278 960.3 674 70.2
Manes.01G265900 Manihot esculenta HOM05D004484 ORTHO05D005370 2.3e-277 958.7 670 71.0
Thecc.01G376200 Theobroma cacao HOM05D004484 ORTHO05D005370 3.0e-277 958.4 670 69.6
Peaxi162Scf00021g01723 Petunia axillaris HOM05D004484 ORTHO05D005370 6.7e-277 957.2 670 70.0
PGSC0003DMG400012761 Solanum tuberosum HOM05D004484 ORTHO05D005370 2.5e-276 955.3 670 69.4
MSTRG.20748 Avicennia marina HOM05D004484 ORTHO05D005370 3.3e-276 954.9 668 70.4
Medtr4g023560 Medicago truncatula HOM05D004484 ORTHO05D005370 3.3e-276 954.9 670 71.2
Eucgr.E01418 Eucalyptus grandis HOM05D004484 ORTHO05D005370 5.7e-276 954.1 670 70.6
CANSAT56G4533 Cannabis sativa HOM05D004484 ORTHO05D005370 9.7e-276 953.4 670 70.7
Ca_27059_v3 Cicer arietinum L. HOM05D004484 ORTHO05D005370 1.1e-274 949.9 670 71.3
CANSAT56G1200 Cannabis sativa HOM05D004484 ORTHO05D005370 3.1e-274 948.3 665 70.7
ClCG05G002220 Citrullus lanatus HOM05D004484 ORTHO05D005370 1.5e-273 946.0 670 70.0
Sed0020955 Sechium edule HOM05D004484 ORTHO05D005370 2.0e-273 945.7 670 68.4
HanXRQChr16g0520161 Helianthus annuus HOM05D004484 ORTHO05D005370 2.6e-273 945.3 671 69.2
Cpa.g.sc18.115 Carica papaya HOM05D004484 ORTHO05D005370 3.8e-272 941.4 670 69.7
Psat7g233440 Pisum sativum HOM05D004484 ORTHO05D005370 5.0e-272 941.0 670 70.4
Solyc01g091350.4 Solanum lycopersicum HOM05D004484 ORTHO05D005370 5.0e-272 941.0 670 68.5
Ciclev10019016m.g Citrus clementina HOM05D004484 ORTHO05D005370 6.5e-272 940.6 670 69.9
SGA_v2.0_scaffold153G37012 Striga asiatica HOM05D004484 ORTHO05D005370 1.9e-271 939.1 668 69.2
Sopen01g037090 Solanum pennellii HOM05D004484 ORTHO05D005370 1.6e-270 936.0 670 67.9
vmacro13399 Vaccinium macrocarpon HOM05D004484 ORTHO05D005370 2.7e-270 935.3 670 70.0
Aqoxy3G02138 Aquilegia oxysepala HOM05D004484 ORTHO05D005370 1.4e-269 932.9 667 69.7
CsaV3_3G009680 Cucumis sativus L. HOM05D004484 ORTHO05D005370 1.8e-269 932.6 670 68.1
Lj3g0013484 Lotus japonicus HOM05D004484 ORTHO05D005370 3.0e-269 931.8 670 69.9
Nitab4.5_0005372g0070 Nicotiana tabacum HOM05D004484 ORTHO05D005370 1.7e-267 926.0 681 67.8
Lsat_1_v5_gn_4_43240 Lactuca sativa HOM05D004484 ORTHO05D005370 1.2e-265 919.8 672 68.6
Glyma.05G125700 Glycine max HOM05D004484 ORTHO05D005370 2.6e-265 918.7 670 69.0
PGR042G0667 Punica granatum HOM05D004484 ORTHO05D005370 1.7e-264 916.0 671 68.1
EL10Ac1g00900 Beta vulgaris HOM05D004484 ORTHO05D005370 2.2e-264 915.6 689 64.2
AUR62004221 Chenopodium quinoa HOM05D004484 ORTHO05D005370 6.5e-264 914.1 690 65.1
Lalb_Chr12g0208261 Lupinus albus HOM05D004484 ORTHO05D005370 6.5e-264 914.1 670 68.4
Sabra14G0049400 Salix brachista HOM05D004484 ORTHO05D005370 1.4e-263 912.9 684 68.4
Migut.B01635 Erythranthe guttata HOM05D004484 ORTHO05D005370 2.1e-262 909.1 668 68.3
VMungo0251G1206 Vigna mungo HOM05D004484 ORTHO05D005370 2.7e-262 908.7 667 67.3
Phvul.002G205800 Phaseolus vulgaris HOM05D004484 ORTHO05D005370 3.6e-262 908.3 668 68.3
arahy.Tifrunner.gnm1.ann1.V1M046 Arachis hypogaea HOM05D004484 ORTHO05D005370 1.0e-261 906.7 670 69.7
arahy.Tifrunner.gnm1.ann1.6K85L9 Arachis hypogaea HOM05D004484 ORTHO05D005370 3.9e-261 904.8 670 69.7
arahy.Tifrunner.gnm1.ann1.HW1IVJ Arachis hypogaea HOM05D004484 ORTHO05D005370 3.9e-261 904.8 670 69.7
arahy.Tifrunner.gnm1.ann1.Q9SWB6 Arachis hypogaea HOM05D004484 ORTHO05D005370 6.7e-261 904.0 670 69.4
MELO3C006188.2 Cucumis melo HOM05D004484 ORTHO05D005370 1.5e-260 902.9 636 68.9
Gorai.007G091100 Gossypium raimondii HOM05D004484 ORTHO05D005370 1.6e-254 882.9 671 65.0
Gohir.A11G080700 Gossypium hirsutum HOM05D004484 ORTHO05D005370 8.0e-254 880.6 671 64.5
Gohir.D11G085300 Gossypium hirsutum HOM05D004484 ORTHO05D005370 3.0e-253 878.6 671 64.8
FAN03G1897 Fragaria x ananassa HOM05D004484 ORTHO05D005370 1.4e-250 869.8 672 65.5
GSVIVG01027609001 Vitis vinifera HOM05D004484 ORTHO05D005370 2.2e-248 862.4 641 68.0
Ah.13g073490 Amaranthus hybridus HOM05D004484 ORTHO05D005370 7.2e-247 857.4 694 61.2
TPR.G9845 Trifolium pratense HOM05D004484 ORTHO05D005370 4.0e-245 851.7 701 63.6
Cfa001721 Carpinus fangiana HOM05D004484 ORTHO05D005370 1.7e-243 846.3 566 73.9
AT1G48050 Arabidopsis thaliana HOM05D004484 ORTHO05D005370 4.5e-241 838.2 671 61.1
Sp1g35020 Schrenkiella parvula HOM05D004484 ORTHO05D005370 1.3e-240 836.6 670 60.3
Carub.0001s3716 Capsella rubella HOM05D004484 ORTHO05D005370 3.2e-239 832.0 671 60.8
THA.LOC104817247 Tarenaya hassleriana HOM05D004484 ORTHO05D005370 1.2e-238 830.1 670 62.7
BcaB04g17469 Brassica carinata HOM05D004484 ORTHO05D005370 3.6e-238 828.6 671 59.9
AL1G54570 Arabidopsis lyrata HOM05D004484 ORTHO05D005370 5.2e-237 824.7 655 61.2
BraSC267t45947Z Brassica rapa HOM05D004484 ORTHO05D005370 7.8e-233 810.8 667 58.5
AUR62013627 Chenopodium quinoa HOM05D004484 ORTHO05D005370 1.7e-232 809.7 685 60.3
BcaC07g37180 Brassica carinata HOM05D004484 ORTHO05D005370 2.9e-232 808.9 672 58.8
SHI13523 Sapria himalayana HOM05D004484 ORTHO05D005370 2.9e-232 808.9 664 61.7
CARHR037700 Cardamine hirsuta HOM05D004484 ORTHO05D005370 5.0e-232 808.1 671 59.6
C08p05620 Brassica napus HOM05D004484 ORTHO05D005370 1.1e-231 807.0 667 58.5
BolC8t47375H Brassica oleracea HOM05D004484 ORTHO05D005370 1.9e-231 806.2 667 58.5
A08p05330 Brassica napus HOM05D004484 ORTHO05D005370 1.2e-230 803.5 669 58.3
Hund27347 Selenicereus undatus HOM05D004484 ORTHO05D005370 2.9e-227 792.3 586 67.4
HPP92_027818 Vanilla planifolia HOM05D004484 ORTHO05D005370 2.7e-217 759.2 669 58.7
Zm00001eb064930 Zea mays HOM05D004484 ORTHO05D005370 3.0e-216 755.7 654 59.0
COL.COLO4_07018 Corchorus olitorius HOM05D004484 ORTHO05D005370 6.2e-214 748.0 554 66.2
Potri.002G148200 Populus trichocarpa HOM05D004484 ORTHO05D005370 3.8e-203 712.2 492 72.8
arahy.Tifrunner.gnm1.ann1.5WGS6V Arachis hypogaea HOM05D004484 ORTHO05D005370 1.4e-202 710.3 658 59.4
arahy.Tifrunner.gnm1.ann1.03ZR4A Arachis hypogaea HOM05D004484 ORTHO05D005370 3.5e-201 705.7 698 56.4
COL.COLO4_12548 Corchorus olitorius HOM05D004484 ORTHO05D005370 3.9e-200 702.2 699 53.4
unitig_749.g13780 Utricularia gibba HOM05D004484 ORTHO05D005370 1.1e-194 684.1 564 62.4
arahy.Tifrunner.gnm1.ann1.5492A7 Arachis hypogaea HOM05D004484 ORTHO05D005370 2.5e-191 672.9 607 60.5
ATR0049G077 Amborella trichopoda HOM05D004484 ORTHO05D005370 9.6e-191 671.0 458 70.5
Hma1.2p1_0086F.1_g044880 Hydrangea macrophylla HOM05D004484 ORTHO05D005370 2.0e-188 663.3 439 74.7
Thhalv10011351m.g Eutrema salsugineum HOM05D004484 ORTHO05D005370 5.1e-184 648.7 651 52.2
Lj9C569T11 Lonicera japonica HOM05D004484 ORTHO05D005370 5.1e-184 648.7 466 68.5
arahy.Tifrunner.gnm1.ann1.T9R8PC Arachis hypogaea HOM05D004484 ORTHO05D005370 6.7e-184 648.3 670 55.2
CDE04G3156 Ceratophyllum demersum HOM05D004484 ORTHO05D005370 8.1e-182 641.3 655 52.4
SMO367G0514 Selaginella moellendorffii HOM05D004484 ORTHO05D005370 4.9e-179 632.1 670 47.6
Pp3c22_11100 Physcomitrium patens HOM05D004484 ORTHO05D005370 5.5e-178 628.6 676 47.8
Aa31LG10G5650 Aethionema arabicum HOM05D004484 ORTHO05D005370 4.3e-175 619.0 566 56.4
Mapoly0129s0012 Marchantia polymorpha HOM05D004484 ORTHO05D005370 4.3e-167 592.4 633 47.6
RcHm_v2.0_Chr1g0350581 Rosa chinensis HOM05D004484 ORTHO05D005370 2.0e-164 583.6 380 73.7
PGR119G1536 Punica granatum HOM05D004484 ORTHO05D005370 1.3e-163 580.9 515 57.9
AagrBONN_evm.TU.Sc2ySwM_368.3373 Anthoceros agrestis HOM05D004484 ORTHO05D005370 3.1e-149 533.1 672 42.1
CBR_g30081 Chara braunii HOM05D004484 ORTHO05D005370 6.6e-115 419.1 463 45.4
RcHm_v2.0_Chr1g0350571 Rosa chinensis HOM05D004484 ORTHO05D005370 2.5e-106 390.6 279 70.6
SHI38996 Sapria himalayana HOM05D004484 ORTHO05D005370 1.5e-87 328.2 204 75.0
Hma1.2p1_0701F.1_g205850 Hydrangea macrophylla HOM05D004484 ORTHO05D005370 6.9e-80 302.8 324 52.8
SHI38095 Sapria himalayana HOM05D004484 ORTHO05D005370 8.4e-78 295.8 190 73.7
SHI38094 Sapria himalayana HOM05D004484 ORTHO05D005370 3.9e-59 233.8 211 55.9
arahy.Tifrunner.gnm1.ann1.47H85H Arachis hypogaea HOM05D004484 ORTHO05D005370 2.1e-57 228.0 342 43.0
Glyma.01G142851 Glycine max HOM05D004484 ORTHO05D005370 1.1e-53 215.7 164 66.5
Glyma.06G243967 Glycine max HOM05D004484 ORTHO05D005370 5.5e-53 213.4 144 66.0
SEGI_20047 Sequoiadendron giganteum HOM05D004484 ORTHO05D005370 2.5e-50 204.5 209 51.7
Carub.0004s0917 Capsella rubella HOM05D004484 ORTHO05D005370 1.4e-45 188.7 258 42.6
MCO15G158 Micromonas commoda HOM05D004484 ORTHO05D005370 1.0e-43 182.6 524 28.6
Hma1.2p1_0170F.1_g075250 Hydrangea macrophylla HOM05D004484 ORTHO05D005370 3.3e-42 177.6 201 53.2
Glyma.17G005802 Glycine max HOM05D004484 ORTHO05D005370 4.1e-40 170.6 192 52.6
SEGI_29754 Sequoiadendron giganteum HOM05D004484 ORTHO05D005370 1.9e-37 161.8 116 65.5
CAN.G594.7 Capsicum annuum HOM05D004484 ORTHO05D005370 1.2e-36 159.1 105 72.4
TPR.G22633 Trifolium pratense HOM05D004484 ORTHO05D005370 1.4e-35 155.6 92 78.3
SHI38995 Sapria himalayana HOM05D004484 ORTHO05D005370 2.6e-34 151.4 126 63.5
CAN.G205.22 Capsicum annuum HOM05D004484 ORTHO05D005370 5.3e-32 143.7 96 68.8
SGA_v2.0_scaffold65G22170 Striga asiatica HOM05D004484 ORTHO05D005370 2.0e-31 141.7 201 40.3
QL08p052505 Quercus lobata HOM05D004484 ORTHO05D005370 7.7e-31 139.8 162 50.0
Os03g0856200 Oryza sativa ssp. japonica HOM05D004484 ORTHO05D005370 1.4e-27 129.0 96 64.6
Eucgr.I00725 Eucalyptus grandis HOM05D004484 ORTHO05D005370 8.8e-27 126.3 82 70.7
CAN.G388.14 Capsicum annuum HOM05D004484 ORTHO05D005370 1.1e-24 119.4 76 73.7
Aa31LG10G5660 Aethionema arabicum HOM05D004484 ORTHO05D005370 1.4e-24 119.0 94 56.4
CAN.G279.6 Capsicum annuum HOM05D004484 ORTHO05D005370 3.2e-21 107.8 72 72.2
Solyc01g091430.2 Solanum lycopersicum HOM05D004484 ORTHO05D005370 1.0e-19 102.8 79 68.4
Glyma.06G243934 Glycine max HOM05D004484 ORTHO05D005370 2.3e-19 101.7 81 61.7
Glyma.06G244302 Glycine max HOM05D004484 ORTHO05D005370 6.8e-19 100.1 81 60.5
SGA_v2.0_scaffold10G05342 Striga asiatica HOM05D004484 ORTHO05D005370 2.0e-18 98.6 168 36.9
SGA_v2.0_scaffold172G39032 Striga asiatica HOM05D004484 ORTHO05D005370 7.5e-18 96.7 168 36.9
PRCOL_00002704 Prasinoderma coloniale HOM05D004484 ORTHO05D005370 3.7e-17 94.4 469 26.7
SGA_v2.0_scaffold29G12247 Striga asiatica HOM05D004484 ORTHO05D005370 2.7e-15 88.2 187 34.2
Solyc01g091440.4 Solanum lycopersicum HOM05D004484 ORTHO05D005370 1.3e-14 85.9 133 41.4
CAN.G321.48 Capsicum annuum HOM05D001267 ORTHO05D002376 3.2e-13 81.3 62 64.5
TPR.G9848 Trifolium pratense HOM05D000164 ORTHO05D000096 4.7e-12 77.4 55 69.1
Cfa025796 Carpinus fangiana HOM05D004484 ORTHO05D005370 8.0e-12 76.6 374 23.8
arahy.Tifrunner.gnm1.ann1.0F06NC Arachis hypogaea HOM05D004484 ORTHO05D005370 2.3e-11 75.1 48 75.0
AagrBONN_evm.TU.Sc2ySwM_368.3370 Anthoceros agrestis HOM05D004484 ORTHO05D005370 2.0e-10 72.0 111 34.2
Cre10.g423800 Chlamydomonas reinhardtii HOM05D004484 ORTHO05D005370 1.7e-09 68.9 531 21.5
Eucgr.E01421 Eucalyptus grandis HOM05D004484 ORTHO05D005370 5.4e-08 63.9 46 65.2
Eucgr.L02075 Eucalyptus grandis HOM05D004484 ORTHO05D005370 1.6e-07 62.4 44 65.9
Hma1.2p1_1470F.1_g285600 Hydrangea macrophylla HOM05D000467 ORTHO05D011800 1.3e-06 59.3 54 61.1


User provided reference genes

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