Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SpUn0400_0010 Schrenkiella parvula HOM05D003203 ORTHO05D003526 0.0e+00 1226.5 612 100.0
Thhalv10006605m.g Eutrema salsugineum HOM05D003203 ORTHO05D003526 1.9e-283 978.8 620 82.4
Carub.0001s0725 Capsella rubella HOM05D003203 ORTHO05D003526 7.9e-269 930.2 625 79.2
BcaC07g42504 Brassica carinata HOM05D003203 ORTHO05D003526 4.8e-258 894.4 618 78.0
AT1G07910 Arabidopsis thaliana HOM05D003203 ORTHO05D003526 3.3e-251 871.7 553 82.6
Carub.0011s0009 Capsella rubella HOM05D003203 ORTHO05D003526 3.4e-248 861.7 553 81.0
BraA09t41949Z Brassica rapa HOM05D003203 ORTHO05D003526 5.9e-248 860.9 618 74.4
BcaC07g41968 Brassica carinata HOM05D003203 ORTHO05D003526 1.3e-247 859.8 617 74.6
C08p50260 Brassica napus HOM05D003203 ORTHO05D003526 1.3e-247 859.8 617 74.6
BolC8t52555H Brassica oleracea HOM05D003203 ORTHO05D003526 1.3e-247 859.8 617 74.6
A09p66110 Brassica napus HOM05D003203 ORTHO05D003526 6.5e-247 857.4 618 74.1
AL1G18200 Arabidopsis lyrata HOM05D003203 ORTHO05D003526 5.7e-243 844.3 573 78.4
Aa31sc36G120 Aethionema arabicum HOM05D003203 ORTHO05D003526 1.4e-236 823.2 602 73.4
BolC5t29358H Brassica oleracea HOM05D003203 ORTHO05D003526 2.6e-235 818.9 557 76.5
BcaC05g24708 Brassica carinata HOM05D003203 ORTHO05D003526 2.2e-234 815.8 558 76.7
BcaB02g06702 Brassica carinata HOM05D003203 ORTHO05D003526 3.7e-234 815.1 572 75.2
A06p05020 Brassica napus HOM05D003203 ORTHO05D003526 8.5e-231 803.9 547 76.8
BraA06t23708Z Brassica rapa HOM05D003203 ORTHO05D003526 8.5e-231 803.9 547 76.8
THA.LOC104815752 Tarenaya hassleriana HOM05D003203 ORTHO05D003526 1.5e-230 803.1 624 68.6
C05p05960 Brassica napus HOM05D003203 ORTHO05D003526 5.5e-230 801.2 546 76.6
AL6G53580 Arabidopsis lyrata HOM05D003203 ORTHO05D003526 1.7e-223 779.6 505 80.8
Ciclev10027702m.g Citrus clementina HOM05D003203 ORTHO05D003526 5.4e-201 704.9 641 61.0
CSS0047004 Camellia sinensis var. sinensis HOM05D003203 ORTHO05D003526 1.0e-199 700.7 593 61.9
Cpa.g.sc139.65 Carica papaya HOM05D003203 ORTHO05D003526 1.7e-199 699.9 586 63.1
Manes.11G141000 Manihot esculenta HOM05D003203 ORTHO05D003526 1.6e-197 693.3 641 59.9
Lj3g0012673 Lotus japonicus HOM05D003203 ORTHO05D003526 1.4e-196 690.3 578 61.6
TWI31G0332 Tripterygium wilfordii HOM05D003203 ORTHO05D003526 1.8e-196 689.9 623 59.9
Cfa011365 Carpinus fangiana HOM05D003203 ORTHO05D003526 3.1e-196 689.1 624 60.3
Eucgr.B02467 Eucalyptus grandis HOM05D003203 ORTHO05D003526 4.0e-196 688.7 579 62.9
COL.COLO4_25248 Corchorus olitorius HOM05D003203 ORTHO05D003526 1.2e-195 687.2 571 62.2
MD11G1129800 Malus domestica HOM05D003203 ORTHO05D003526 2.0e-195 686.4 649 59.8
RcHm_v2.0_Chr5g0060751 Rosa chinensis HOM05D003203 ORTHO05D003526 2.0e-195 686.4 622 61.3
Glyma.11G152960 Glycine max HOM05D003203 ORTHO05D003526 7.5e-195 684.5 592 61.5
VMungo1127G1096 Vigna mungo HOM05D003203 ORTHO05D003526 7.5e-195 684.5 602 60.3
CiPaw.13G106900 Carya illinoinensis HOM05D003203 ORTHO05D003526 1.3e-194 683.7 574 63.4
Ca_19241_v3 Cicer arietinum L. HOM05D003203 ORTHO05D003526 2.2e-194 682.9 620 60.0
Lj3g0020808 Lotus japonicus HOM05D003203 ORTHO05D003526 2.9e-194 682.6 570 61.6
CANSAT54G1869 Cannabis sativa HOM05D003203 ORTHO05D003526 3.7e-194 682.2 630 58.6
Dinv32789 Davidia involucrata HOM05D003203 ORTHO05D003526 3.7e-194 682.2 551 64.6
QL01p037166 Quercus lobata HOM05D003203 ORTHO05D003526 1.4e-193 680.2 612 60.3
TPR.G14912 Trifolium pratense HOM05D003203 ORTHO05D003526 2.7e-192 676.0 603 59.9
Gorai.009G078900 Gossypium raimondii HOM05D003203 ORTHO05D003526 3.5e-192 675.6 572 64.2
Medtr4g060795 Medicago truncatula HOM05D003203 ORTHO05D003526 3.5e-192 675.6 582 61.5
Sc15g0001570 Simmondsia chinensis HOM05D003203 ORTHO05D003526 1.3e-191 673.7 630 58.7
Sopen11g030070 Solanum pennellii HOM05D003203 ORTHO05D003526 1.7e-191 673.3 643 58.5
Psat7g223280 Pisum sativum HOM05D003203 ORTHO05D003526 5.1e-191 671.8 613 58.9
Thecc.09G260300 Theobroma cacao HOM05D003203 ORTHO05D003526 5.1e-191 671.8 602 60.8
Phvul.011G072500 Phaseolus vulgaris HOM05D003203 ORTHO05D003526 1.5e-190 670.2 608 59.4
FAN16G3448 Fragaria x ananassa HOM05D003203 ORTHO05D003526 2.5e-190 669.5 624 59.8
Solyc11g072430.3 Solanum lycopersicum HOM05D003203 ORTHO05D003526 2.5e-190 669.5 631 58.8
Prupe.6G094700 Prunus persica HOM05D003203 ORTHO05D003526 1.6e-189 666.8 621 59.7
PGR102G2647 Punica granatum HOM05D003203 ORTHO05D003526 3.6e-189 665.6 586 60.4
arahy.Tifrunner.gnm1.ann1.DWB64P Arachis hypogaea HOM05D003203 ORTHO05D003526 4.7e-189 665.2 621 58.8
Migut.D02182 Erythranthe guttata HOM05D003203 ORTHO05D003526 1.1e-188 664.1 624 59.8
Sabra16G0090500 Salix brachista HOM05D003203 ORTHO05D003526 1.1e-188 664.1 567 62.6
MELO3C005030.2 Cucumis melo HOM05D003203 ORTHO05D003526 1.4e-188 663.7 586 60.4
CsaV3_1G013020 Cucumis sativus L. HOM05D003203 ORTHO05D003526 4.0e-188 662.1 587 60.5
arahy.Tifrunner.gnm1.ann1.GJ7521 Arachis hypogaea HOM05D003203 ORTHO05D003526 5.2e-188 661.8 634 57.9
Oeu005910.3 Olea europaea HOM05D003203 ORTHO05D003526 5.2e-188 661.8 513 66.3
MSTRG.21144 Avicennia marina HOM05D003203 ORTHO05D003526 1.5e-187 660.2 580 60.2
Cc01_g11550 Coffea canephora HOM05D003203 ORTHO05D003526 2.0e-187 659.8 639 57.4
AUR62006513 Chenopodium quinoa HOM05D003203 ORTHO05D003526 2.6e-187 659.4 580 61.7
FAN11G3892 Fragaria x ananassa HOM05D003203 ORTHO05D003526 2.6e-187 659.4 620 59.8
Lalb_Chr03g0027111 Lupinus albus HOM05D003203 ORTHO05D003526 4.4e-187 658.7 576 60.6
FvH4_3g33360 Fragaria vesca HOM05D003203 ORTHO05D003526 5.8e-187 658.3 620 59.7
Sed0015984 Sechium edule HOM05D003203 ORTHO05D003526 1.4e-185 653.7 641 58.0
ClCG03G002340 Citrullus lanatus HOM05D003203 ORTHO05D003526 3.2e-185 652.5 622 57.9
HanXRQChr13g0401461 Helianthus annuus HOM05D003203 ORTHO05D003526 7.8e-184 647.9 619 58.3
Aqoxy4G03208 Aquilegia oxysepala HOM05D003203 ORTHO05D003526 1.3e-183 647.1 626 56.4
TAR633G1300 Trochodendron aralioides HOM05D003203 ORTHO05D003526 1.3e-183 647.1 586 59.7
TAR636G0568 Trochodendron aralioides HOM05D003203 ORTHO05D003526 3.9e-183 645.6 634 57.3
GSVIVG01025133001 Vitis vinifera HOM05D003203 ORTHO05D003526 1.5e-182 643.7 458 69.7
Nitab4.5_0001802g0140 Nicotiana tabacum HOM05D003203 ORTHO05D003526 1.9e-182 643.3 614 56.8
EL10Ac9g22449 Beta vulgaris HOM05D003203 ORTHO05D003526 1.8e-180 636.7 574 61.0
AUR62025015 Chenopodium quinoa HOM05D003203 ORTHO05D003526 3.1e-180 636.0 638 56.7
DCAR_006042 Daucus carota HOM05D003203 ORTHO05D003526 3.1e-180 636.0 508 64.2
Gohir.D05G077500 Gossypium hirsutum HOM05D003203 ORTHO05D003526 3.1e-180 636.0 573 61.4
CAN.G352.40 Capsicum annuum HOM05D003203 ORTHO05D003526 1.2e-179 634.0 562 60.7
Haze_23916 Corylus avellana HOM05D003203 ORTHO05D003526 2.0e-179 633.3 624 57.2
Nitab4.5_0002129g0110 Nicotiana tabacum HOM05D003203 ORTHO05D003526 4.4e-179 632.1 613 56.4
Lsat_1_v5_gn_6_26241 Lactuca sativa HOM05D003203 ORTHO05D003526 9.9e-179 630.9 651 54.4
Lj1A185G36 Lonicera japonica HOM05D003203 ORTHO05D003526 9.9e-179 630.9 584 56.3
Lj1C185T11 Lonicera japonica HOM05D003203 ORTHO05D003526 1.3e-178 630.6 595 56.6
SalBow3G4618 Salvia bowleyana HOM05D003203 ORTHO05D003526 8.4e-178 627.9 616 56.0
RcHm_v2.0_Chr4g0389641 Rosa chinensis HOM05D003203 ORTHO05D003526 3.2e-177 625.9 452 69.2
ATR1159G092 Amborella trichopoda HOM05D003203 ORTHO05D003526 1.2e-176 624.0 534 62.2
SHI27628 Sapria himalayana HOM05D003203 ORTHO05D003526 2.1e-176 623.2 601 57.6
Rhsim01G0220300 Rhododendron simsii HOM05D003203 ORTHO05D003526 6.0e-176 621.7 729 49.5
Duzib168G0563 Durio zibethinus HOM05D003203 ORTHO05D003526 8.7e-175 617.8 574 58.9
unitig_736.g22420 Utricularia gibba HOM05D003203 ORTHO05D003526 1.5e-174 617.1 611 57.0
PSO339G5999 Papaver somniferum HOM05D003203 ORTHO05D003526 2.5e-174 616.3 505 63.0
Nn2g10680 Nelumbo nucifera HOM05D003203 ORTHO05D003526 2.1e-173 613.2 591 57.5
FvH4_4g02320 Fragaria vesca HOM05D003203 ORTHO05D003526 1.4e-172 610.5 442 69.2
PSO063G5461 Papaver somniferum HOM05D003203 ORTHO05D003526 1.5e-171 607.1 529 60.5
Migut.N02091 Erythranthe guttata HOM05D003203 ORTHO05D003526 2.0e-171 606.7 455 67.5
FAN12G0401 Fragaria x ananassa HOM05D003203 ORTHO05D003526 7.6e-171 604.7 442 68.8
PSO765G0203 Papaver somniferum HOM05D003203 ORTHO05D003526 9.9e-171 604.4 610 54.6
HPP92_010183 Vanilla planifolia HOM05D003203 ORTHO05D003526 2.4e-169 599.7 627 54.7
Atru.chr3.3693 Acer truncatum HOM05D003203 ORTHO05D003526 1.2e-168 597.4 535 60.9
Zm00001eb302520 Zea mays HOM05D003203 ORTHO05D003526 3.0e-167 592.8 558 56.3
CDE07G0291 Ceratophyllum demersum HOM05D003203 ORTHO05D003526 6.7e-167 591.7 559 56.4
Gohir.A05G074700 Gossypium hirsutum HOM05D003203 ORTHO05D003526 1.3e-165 587.4 414 70.5
SGA_v2.0_scaffold97G29171 Striga asiatica HOM05D003203 ORTHO05D003526 2.4e-164 583.2 603 53.9
Os07g0191700 Oryza sativa ssp. japonica HOM05D003203 ORTHO05D003526 1.2e-163 580.9 451 64.1
ECA233G2891 Erigeron canadensis HOM05D003203 ORTHO05D003526 7.6e-163 578.2 580 56.7
Lj2C1036G7 Lonicera japonica HOM05D003203 ORTHO05D003526 1.7e-162 577.0 606 54.1
SalBow6G0781 Salvia bowleyana HOM05D003203 ORTHO05D003526 5.3e-156 555.4 499 60.1
SEGI_33151 Sequoiadendron giganteum HOM05D003203 ORTHO05D003526 7.9e-152 541.6 521 55.9
FAN17G1981 Fragaria x ananassa HOM05D003203 ORTHO05D003526 5.5e-145 518.8 416 64.2
Potri.016G083100 Populus trichocarpa HOM05D003203 ORTHO05D003526 1.9e-142 510.4 364 69.2
Aqoxy3G02869 Aquilegia oxysepala HOM05D003203 ORTHO05D003526 9.7e-142 508.1 377 65.3
FAN22G0069 Fragaria x ananassa HOM05D003203 ORTHO05D003526 6.9e-140 501.9 443 60.0
Peaxi162Scf00389g00932 Petunia axillaris HOM05D003203 ORTHO05D003526 1.7e-125 454.1 342 65.5
Nn2g13009 Nelumbo nucifera HOM05D003203 ORTHO05D003526 1.2e-118 431.4 334 63.8
arahy.Tifrunner.gnm1.ann1.VS5L85 Arachis hypogaea HOM05D003203 ORTHO05D003526 2.0e-118 430.6 524 50.8
Mapoly0005s0012 Marchantia polymorpha HOM05D003203 ORTHO05D003526 3.1e-116 423.3 489 46.4
MD03G1112400 Malus domestica HOM05D003203 ORTHO05D003526 4.1e-116 422.9 423 59.6
AagrBONN_evm.TU.Sc2ySwM_362.2654 Anthoceros agrestis HOM05D003203 ORTHO05D003526 4.2e-113 412.9 458 47.8
vmacro14071 Vaccinium macrocarpon HOM05D003203 ORTHO05D003526 4.2e-113 412.9 375 56.3
AagrBONN_evm.TU.Sc2ySwM_244.3 Anthoceros agrestis HOM05D003203 ORTHO05D003526 2.1e-112 410.6 444 48.6
Pp3c27_2850 Physcomitrium patens HOM05D003203 ORTHO05D003526 2.7e-112 410.2 557 42.7
AagrBONN_evm.TU.Sc2ySwM_117.4033 Anthoceros agrestis HOM05D003203 ORTHO05D003526 4.7e-112 409.5 444 48.6
AagrBONN_evm.TU.Sc2ySwM_341.1 Anthoceros agrestis HOM05D003203 ORTHO05D003526 4.7e-112 409.5 444 48.6
AagrBONN_evm.TU.Sc2ySwM_117.4029 Anthoceros agrestis HOM05D003203 ORTHO05D003526 8.0e-112 408.7 444 48.4
AagrBONN_evm.TU.Sc2ySwM_341.2 Anthoceros agrestis HOM05D003203 ORTHO05D003526 3.0e-111 406.8 444 48.4
AagrBONN_evm.TU.Sc2ySwM_117.4034 Anthoceros agrestis HOM05D003203 ORTHO05D003526 4.0e-111 406.4 444 48.4
Hund28195 Selenicereus undatus HOM05D003203 ORTHO05D003526 3.1e-108 396.7 373 56.3
Hund28197 Selenicereus undatus HOM05D003203 ORTHO05D003526 3.1e-108 396.7 373 56.3
SMO223G0015 Selaginella moellendorffii HOM05D003203 ORTHO05D003526 4.2e-105 386.3 442 48.4
CBR_g39406 Chara braunii HOM05D003203 ORTHO05D003526 9.8e-102 375.2 452 46.2
AL7G46970 Arabidopsis lyrata HOM05D003203 ORTHO05D003526 3.7e-101 373.2 208 87.0
AagrBONN_evm.TU.Sc2ySwM_117.4032 Anthoceros agrestis HOM05D003203 ORTHO05D003526 3.6e-96 356.7 370 50.5
CARHR007720 Cardamine hirsuta HOM05D003203 ORTHO05D003526 2.4e-84 317.4 187 84.0
Lsat_1_v5_gn_4_85140 Lactuca sativa HOM05D003203 ORTHO05D003526 7.8e-67 259.2 251 53.0
DCAR_024905 Daucus carota HOM05D003203 ORTHO05D003526 1.3e-61 241.9 209 55.5
Lj3g0013082 Lotus japonicus HOM05D003203 ORTHO05D003526 4.3e-57 226.9 226 55.3
DCAR_024904 Daucus carota HOM05D003203 ORTHO05D003526 3.1e-55 220.7 187 65.2
vmacro14466 Vaccinium macrocarpon HOM05D003203 ORTHO05D003526 3.8e-53 213.8 240 53.3
Lsat_1_v5_gn_1_93381 Lactuca sativa HOM05D003203 ORTHO05D003526 4.9e-53 213.4 173 59.0
Gohir.A07G142600 Gossypium hirsutum HOM05D003203 ORTHO05D003526 7.1e-52 209.5 250 52.8
Ah.01g014960 Amaranthus hybridus HOM05D003203 ORTHO05D003526 9.6e-49 199.1 225 53.3
AagrBONN_evm.TU.Sc2ySwM_246.1 Anthoceros agrestis HOM05D003203 ORTHO05D003526 2.8e-48 197.6 270 38.9
Nitab4.5_0000848g0100 Nicotiana tabacum HOM05D003203 ORTHO05D003526 5.3e-47 193.4 286 41.6
Nitab4.5_0004347g0030 Nicotiana tabacum HOM05D003203 ORTHO05D003526 5.5e-44 183.3 162 58.0
vmacro14465 Vaccinium macrocarpon HOM05D003203 ORTHO05D003526 6.7e-42 176.4 142 62.0
Peaxi162Scf00389g00943 Petunia axillaris HOM05D003203 ORTHO05D003526 6.2e-40 169.9 209 50.2
Dinv24673 Davidia involucrata HOM05D003203 ORTHO05D003526 1.4e-39 168.7 194 56.7
vmacro14070 Vaccinium macrocarpon HOM05D003203 ORTHO05D003526 2.6e-38 164.5 281 40.2
AagrBONN_evm.TU.Sc2ySwM_245.2 Anthoceros agrestis HOM05D003203 ORTHO05D003526 2.1e-35 154.8 238 36.1
RcHm_v2.0_Chr1g0326771 Rosa chinensis HOM05D003203 ORTHO05D003526 2.4e-31 141.4 134 56.0
TPR.G38674 Trifolium pratense HOM05D003203 ORTHO05D003526 4.1e-31 140.6 117 59.0
TPR.G38645 Trifolium pratense HOM05D003203 ORTHO05D003526 3.7e-24 117.5 82 62.2
QL11p006401 Quercus lobata HOM05D003203 ORTHO05D003526 1.8e-23 115.2 84 65.5
QL11p006907 Quercus lobata HOM05D003203 ORTHO05D003526 3.1e-23 114.4 80 67.5
QL11p006896 Quercus lobata HOM05D003203 ORTHO05D003526 6.9e-23 113.2 85 64.7
Thhalv10023078m.g Eutrema salsugineum HOM05D003203 ORTHO05D003526 9.1e-23 112.8 114 54.4
vmacro14464 Vaccinium macrocarpon HOM05D003203 ORTHO05D003526 3.8e-21 107.5 85 60.0
Lsat_1_v5_gn_1_45160 Lactuca sativa HOM05D003203 ORTHO05D003526 1.6e-19 102.1 130 49.2
Glyma.11G172800 Glycine max HOM05D003203 ORTHO05D003526 5.7e-17 93.6 164 43.3
COL.COLO4_02731 Corchorus olitorius HOM05D003203 ORTHO05D003526 1.1e-15 89.4 42 90.5
RcHm_v2.0_Chr3g0490601 Rosa chinensis HOM05D003203 ORTHO05D003526 2.0e-14 85.1 85 54.1
Sp4g05030 Schrenkiella parvula HOM05D006884 ORTHO05D008604 5.9e-14 83.6 48 89.6
TPR.G22000 Trifolium pratense HOM05D003203 ORTHO05D003526 7.7e-14 83.2 54 66.7
Lsat_1_v5_gn_8_71460 Lactuca sativa HOM05D006073 ORTHO05D007354 3.8e-13 80.9 91 51.6
TPR.G2853 Trifolium pratense HOM05D003203 ORTHO05D003526 8.5e-13 79.7 52 76.9
Cre07.g352800 Chlamydomonas reinhardtii HOM05D003203 ORTHO05D003526 4.2e-12 77.4 224 29.0
Lsat_1_v5_gn_2_120 Lactuca sativa HOM05D003203 ORTHO05D003526 2.1e-11 75.1 80 45.0
Lsat_1_v5_gn_6_107780 Lactuca sativa HOM05D004503 ORTHO05D003526 1.4e-10 72.4 61 52.5
Zm00001eb134270 Zea mays HOM05D003203 ORTHO05D003526 1.8e-10 72.0 49 73.5
Lsat_1_v5_gn_8_153961 Lactuca sativa HOM05D003203 ORTHO05D003526 5.2e-10 70.5 193 31.1
Lsat_1_v5_gn_9_33601 Lactuca sativa HOM05D003172 ORTHO05D003526 1.3e-08 65.9 208 28.4
MELO3C000359.2 Cucumis melo HOM05D003203 ORTHO05D003526 8.2e-08 63.2 98 36.7
CSS0004531 Camellia sinensis var. sinensis HOM05D003203 ORTHO05D003526 1.4e-07 62.4 82 41.5
TPR.G33733 Trifolium pratense HOM05D003203 ORTHO05D003526 1.2e-06 59.3 36 72.2


User provided reference genes

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