Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g091350.4 Solanum lycopersicum HOM05D004484 ORTHO05D005370 0.0e+00 1389.8 710 100.0
Sopen01g037090 Solanum pennellii HOM05D004484 ORTHO05D005370 0.0e+00 1368.6 710 98.3
PGSC0003DMG400012761 Solanum tuberosum HOM05D004484 ORTHO05D005370 0.0e+00 1313.9 711 94.2
CAN.G388.13 Capsicum annuum HOM05D004484 ORTHO05D005370 0.0e+00 1251.9 707 89.5
Nitab4.5_0000457g0330 Nicotiana tabacum HOM05D004484 ORTHO05D005370 0.0e+00 1227.2 712 87.4
Peaxi162Scf00021g01723 Petunia axillaris HOM05D004484 ORTHO05D005370 0.0e+00 1196.4 712 85.1
Nitab4.5_0005372g0070 Nicotiana tabacum HOM05D004484 ORTHO05D005370 0.0e+00 1191.0 722 84.3
Cc02_g36700 Coffea canephora HOM05D004484 ORTHO05D005370 3.7e-302 1041.2 687 74.8
Dinv32377 Davidia involucrata HOM05D004484 ORTHO05D005370 6.9e-301 1036.9 687 74.4
Oeu055487.1 Olea europaea HOM05D004484 ORTHO05D005370 1.2e-300 1036.2 692 74.3
Migut.B01635 Erythranthe guttata HOM05D004484 ORTHO05D005370 3.3e-287 991.5 686 72.7
Lj7A528T57 Lonicera japonica HOM05D004484 ORTHO05D005370 9.1e-285 983.4 694 71.2
MSTRG.20748 Avicennia marina HOM05D004484 ORTHO05D005370 4.5e-284 981.1 685 71.7
SGA_v2.0_scaffold153G37012 Striga asiatica HOM05D004484 ORTHO05D005370 4.5e-284 981.1 691 70.2
Hma1.2p1_0086F.1_g044870 Hydrangea macrophylla HOM05D004484 ORTHO05D005370 1.1e-282 976.5 682 71.0
Eucgr.E01418 Eucalyptus grandis HOM05D004484 ORTHO05D005370 1.6e-281 972.6 686 69.7
ECA234G1700 Erigeron canadensis HOM05D004484 ORTHO05D005370 4.0e-280 968.0 691 69.8
QL08p052472 Quercus lobata HOM05D004484 ORTHO05D005370 4.0e-280 968.0 687 69.6
CiPaw.01G262000 Carya illinoinensis HOM05D004484 ORTHO05D005370 5.2e-280 967.6 687 68.6
Nn1g01233 Nelumbo nucifera HOM05D004484 ORTHO05D005370 3.8e-275 951.4 685 68.3
HanXRQChr16g0520161 Helianthus annuus HOM05D004484 ORTHO05D005370 6.5e-275 950.7 691 68.2
Potri.014G069700 Populus trichocarpa HOM05D004484 ORTHO05D005370 8.5e-275 950.3 688 69.2
CSS0036976 Camellia sinensis var. sinensis HOM05D004484 ORTHO05D005370 2.5e-274 948.7 692 70.1
Prupe.2G145600 Prunus persica HOM05D004484 ORTHO05D005370 5.5e-274 947.6 687 67.8
Haze_16815 Corylus avellana HOM05D004484 ORTHO05D005370 1.2e-273 946.4 742 63.7
TWI23G0227 Tripterygium wilfordii HOM05D004484 ORTHO05D005370 2.7e-273 945.3 687 68.7
Aqoxy5G00403 Aquilegia oxysepala HOM05D004484 ORTHO05D005370 4.7e-273 944.5 687 68.4
DCAR_015907 Daucus carota HOM05D004484 ORTHO05D005370 4.7e-273 944.5 687 67.4
MD07G1121000 Malus domestica HOM05D004484 ORTHO05D005370 8.0e-273 943.7 687 68.3
Sc02g0002590 Simmondsia chinensis HOM05D004484 ORTHO05D005370 2.3e-272 942.2 672 68.8
Sed0020955 Sechium edule HOM05D004484 ORTHO05D005370 6.8e-272 940.6 702 66.1
PSO478G5008 Papaver somniferum HOM05D004484 ORTHO05D005370 2.0e-271 939.1 688 67.7
vmacro13399 Vaccinium macrocarpon HOM05D004484 ORTHO05D005370 4.4e-271 937.9 686 68.8
ClCG05G002220 Citrullus lanatus HOM05D004484 ORTHO05D005370 2.2e-270 935.6 687 67.8
Ca_19886_v3 Cicer arietinum L. HOM05D004484 ORTHO05D005370 2.8e-270 935.3 686 67.8
Atru.chr5.309 Acer truncatum HOM05D004484 ORTHO05D005370 4.9e-270 934.5 683 67.3
TAR629G2468 Trochodendron aralioides HOM05D004484 ORTHO05D005370 4.9e-270 934.5 670 68.5
GSVIVG01027610001 Vitis vinifera HOM05D004484 ORTHO05D005370 6.3e-270 934.1 670 68.7
CANSAT56G4533 Cannabis sativa HOM05D004484 ORTHO05D005370 2.0e-268 929.1 687 67.1
CsaV3_3G009680 Cucumis sativus L. HOM05D004484 ORTHO05D005370 2.3e-267 925.6 693 65.7
Lalb_Chr13g0291731 Lupinus albus HOM05D004484 ORTHO05D005370 1.9e-266 922.5 686 66.2
Medtr4g023560 Medicago truncatula HOM05D004484 ORTHO05D005370 3.3e-266 921.8 686 66.0
Lsat_1_v5_gn_4_43240 Lactuca sativa HOM05D004484 ORTHO05D005370 4.3e-266 921.4 687 67.1
CANSAT56G1200 Cannabis sativa HOM05D004484 ORTHO05D005370 5.6e-266 921.0 687 66.5
Manes.01G265900 Manihot esculenta HOM05D004484 ORTHO05D005370 4.7e-265 917.9 686 66.2
Ca_27059_v3 Cicer arietinum L. HOM05D004484 ORTHO05D005370 8.0e-265 917.1 686 66.6
EL10Ac1g00900 Beta vulgaris HOM05D004484 ORTHO05D005370 1.0e-264 916.8 702 63.1
Lj3g0013484 Lotus japonicus HOM05D004484 ORTHO05D005370 2.0e-263 912.5 687 66.1
Thecc.01G376200 Theobroma cacao HOM05D004484 ORTHO05D005370 3.7e-262 908.3 690 64.6
arahy.Tifrunner.gnm1.ann1.6K85L9 Arachis hypogaea HOM05D004484 ORTHO05D005370 7.0e-261 904.0 688 66.1
arahy.Tifrunner.gnm1.ann1.HW1IVJ Arachis hypogaea HOM05D004484 ORTHO05D005370 7.0e-261 904.0 688 66.1
arahy.Tifrunner.gnm1.ann1.V1M046 Arachis hypogaea HOM05D004484 ORTHO05D005370 7.0e-261 904.0 688 66.0
MBI12_g10758_MAGBIO Magnolia biondii HOM05D004484 ORTHO05D005370 1.2e-260 903.3 721 63.4
FvH4_7g11900 Fragaria vesca HOM05D004484 ORTHO05D005370 1.6e-260 902.9 687 64.6
arahy.Tifrunner.gnm1.ann1.Q9SWB6 Arachis hypogaea HOM05D004484 ORTHO05D005370 2.7e-260 902.1 688 65.8
PGR042G0667 Punica granatum HOM05D004484 ORTHO05D005370 7.8e-260 900.6 688 64.2
Cpa.g.sc18.115 Carica papaya HOM05D004484 ORTHO05D005370 1.0e-259 900.2 685 65.0
FAN01G0628 Fragaria x ananassa HOM05D004484 ORTHO05D005370 1.7e-259 899.4 687 64.3
FAN06G1787 Fragaria x ananassa HOM05D004484 ORTHO05D005370 1.9e-258 896.0 687 64.5
Psat7g233440 Pisum sativum HOM05D004484 ORTHO05D005370 1.9e-258 896.0 686 63.6
FAN10G1483 Fragaria x ananassa HOM05D004484 ORTHO05D005370 4.3e-258 894.8 687 64.3
FAN06G3319 Fragaria x ananassa HOM05D004484 ORTHO05D005370 7.3e-258 894.0 687 64.2
FAN10G2369 Fragaria x ananassa HOM05D004484 ORTHO05D005370 7.3e-258 894.0 687 64.3
AUR62004221 Chenopodium quinoa HOM05D004484 ORTHO05D005370 1.6e-257 892.9 716 62.8
Sabra14G0049400 Salix brachista HOM05D004484 ORTHO05D005370 3.6e-257 891.7 702 64.8
MELO3C006188.2 Cucumis melo HOM05D004484 ORTHO05D005370 8.0e-257 890.6 658 66.6
Glyma.05G125700 Glycine max HOM05D004484 ORTHO05D005370 8.0e-257 890.6 687 65.1
Lalb_Chr12g0208261 Lupinus albus HOM05D004484 ORTHO05D005370 6.4e-254 880.9 686 63.4
Aqoxy3G02138 Aquilegia oxysepala HOM05D004484 ORTHO05D005370 4.6e-252 874.8 686 63.6
Ciclev10019016m.g Citrus clementina HOM05D004484 ORTHO05D005370 1.0e-251 873.6 687 63.8
Phvul.002G205800 Phaseolus vulgaris HOM05D004484 ORTHO05D005370 3.3e-250 868.6 684 63.6
Ah.13g073490 Amaranthus hybridus HOM05D004484 ORTHO05D005370 1.4e-248 863.2 711 60.5
VMungo0251G1206 Vigna mungo HOM05D004484 ORTHO05D005370 1.8e-248 862.8 682 62.2
Gorai.007G091100 Gossypium raimondii HOM05D004484 ORTHO05D005370 2.3e-248 862.4 688 61.2
Gohir.A11G080700 Gossypium hirsutum HOM05D004484 ORTHO05D005370 3.1e-248 862.1 688 61.2
Gohir.D11G085300 Gossypium hirsutum HOM05D004484 ORTHO05D005370 3.4e-247 858.6 688 61.0
THA.LOC104817247 Tarenaya hassleriana HOM05D004484 ORTHO05D005370 1.3e-238 830.1 687 59.7
BcaB04g17469 Brassica carinata HOM05D004484 ORTHO05D005370 1.0e-235 820.5 694 58.5
Sp1g35020 Schrenkiella parvula HOM05D004484 ORTHO05D005370 1.3e-235 820.1 680 58.2
Carub.0001s3716 Capsella rubella HOM05D004484 ORTHO05D005370 3.9e-235 818.5 689 58.3
AT1G48050 Arabidopsis thaliana HOM05D004484 ORTHO05D005370 6.6e-235 817.8 689 58.5
Cfa001721 Carpinus fangiana HOM05D004484 ORTHO05D005370 3.3e-234 815.5 587 68.1
BcaC07g37180 Brassica carinata HOM05D004484 ORTHO05D005370 1.2e-233 813.5 688 58.0
FAN03G1897 Fragaria x ananassa HOM05D004484 ORTHO05D005370 2.1e-233 812.8 689 59.7
C08p05620 Brassica napus HOM05D004484 ORTHO05D005370 2.8e-233 812.4 684 58.0
BraSC267t45947Z Brassica rapa HOM05D004484 ORTHO05D005370 2.8e-233 812.4 684 57.6
BolC8t47375H Brassica oleracea HOM05D004484 ORTHO05D005370 4.7e-233 811.6 684 58.0
GSVIVG01027609001 Vitis vinifera HOM05D004484 ORTHO05D005370 6.2e-233 811.2 656 63.1
TPR.G9845 Trifolium pratense HOM05D004484 ORTHO05D005370 2.4e-232 809.3 720 57.5
CARHR037700 Cardamine hirsuta HOM05D004484 ORTHO05D005370 8.9e-232 807.4 687 58.2
AUR62013627 Chenopodium quinoa HOM05D004484 ORTHO05D005370 1.4e-229 800.0 700 59.1
A08p05330 Brassica napus HOM05D004484 ORTHO05D005370 9.3e-229 797.3 668 58.1
AL1G54570 Arabidopsis lyrata HOM05D004484 ORTHO05D005370 5.1e-227 791.6 671 58.1
SHI13523 Sapria himalayana HOM05D004484 ORTHO05D005370 9.0e-224 780.8 663 60.3
Zm00001eb064930 Zea mays HOM05D004484 ORTHO05D005370 1.3e-219 766.9 673 58.4
Hund27347 Selenicereus undatus HOM05D004484 ORTHO05D005370 1.6e-217 760.0 601 63.7
HPP92_027818 Vanilla planifolia HOM05D004484 ORTHO05D005370 1.5e-210 736.9 690 55.1
COL.COLO4_07018 Corchorus olitorius HOM05D004484 ORTHO05D005370 1.2e-207 727.2 555 65.0
arahy.Tifrunner.gnm1.ann1.03ZR4A Arachis hypogaea HOM05D004484 ORTHO05D005370 2.8e-201 706.1 704 54.0
unitig_749.g13780 Utricularia gibba HOM05D004484 ORTHO05D005370 2.8e-201 706.1 570 63.3
arahy.Tifrunner.gnm1.ann1.5WGS6V Arachis hypogaea HOM05D004484 ORTHO05D005370 1.4e-200 703.7 661 56.6
arahy.Tifrunner.gnm1.ann1.5492A7 Arachis hypogaea HOM05D004484 ORTHO05D005370 2.5e-189 666.4 674 53.9
Hma1.2p1_0086F.1_g044880 Hydrangea macrophylla HOM05D004484 ORTHO05D005370 1.3e-185 654.1 454 71.4
COL.COLO4_12548 Corchorus olitorius HOM05D004484 ORTHO05D005370 1.7e-185 653.7 710 48.6
arahy.Tifrunner.gnm1.ann1.T9R8PC Arachis hypogaea HOM05D004484 ORTHO05D005370 4.5e-183 645.6 682 51.5
Potri.002G148200 Populus trichocarpa HOM05D004484 ORTHO05D005370 2.2e-182 643.3 491 65.2
Pp3c22_11100 Physcomitrium patens HOM05D004484 ORTHO05D005370 9.4e-181 637.9 716 46.6
Thhalv10011351m.g Eutrema salsugineum HOM05D004484 ORTHO05D005370 8.8e-179 631.3 656 50.9
Lj9C569T11 Lonicera japonica HOM05D004484 ORTHO05D005370 5.0e-174 615.5 466 64.6
ATR0049G077 Amborella trichopoda HOM05D004484 ORTHO05D005370 4.8e-169 599.0 458 62.4
Aa31LG10G5650 Aethionema arabicum HOM05D004484 ORTHO05D005370 3.1e-168 596.3 581 53.2
CDE04G3156 Ceratophyllum demersum HOM05D004484 ORTHO05D005370 2.7e-167 593.2 670 47.0
SMO367G0514 Selaginella moellendorffii HOM05D004484 ORTHO05D005370 4.5e-167 592.4 706 44.6
PGR119G1536 Punica granatum HOM05D004484 ORTHO05D005370 1.0e-158 564.7 516 57.0
Mapoly0129s0012 Marchantia polymorpha HOM05D004484 ORTHO05D005370 1.7e-158 563.9 633 45.7
RcHm_v2.0_Chr1g0350581 Rosa chinensis HOM05D004484 ORTHO05D005370 4.4e-146 522.7 381 66.1
AagrBONN_evm.TU.Sc2ySwM_368.3373 Anthoceros agrestis HOM05D004484 ORTHO05D005370 1.9e-136 490.7 689 38.8
CBR_g30081 Chara braunii HOM05D004484 ORTHO05D005370 1.4e-112 411.4 657 36.4
RcHm_v2.0_Chr1g0350571 Rosa chinensis HOM05D004484 ORTHO05D005370 2.5e-101 374.0 294 63.9
SHI38996 Sapria himalayana HOM05D004484 ORTHO05D005370 4.5e-82 310.1 204 73.0
Hma1.2p1_0701F.1_g205850 Hydrangea macrophylla HOM05D004484 ORTHO05D005370 1.0e-73 282.3 268 57.5
SHI38095 Sapria himalayana HOM05D004484 ORTHO05D005370 4.2e-72 276.9 190 69.5
arahy.Tifrunner.gnm1.ann1.47H85H Arachis hypogaea HOM05D004484 ORTHO05D005370 1.2e-58 232.3 336 42.0
SHI38094 Sapria himalayana HOM05D004484 ORTHO05D005370 1.7e-57 228.4 211 56.4
Glyma.06G243967 Glycine max HOM05D004484 ORTHO05D005370 2.2e-52 211.5 144 67.4
Solyc01g091430.2 Solanum lycopersicum HOM05D004484 ORTHO05D005370 1.1e-48 199.1 115 87.8
Glyma.01G142851 Glycine max HOM05D004484 ORTHO05D005370 9.8e-45 186.0 162 56.2
CAN.G594.7 Capsicum annuum HOM05D004484 ORTHO05D005370 1.3e-44 185.7 107 84.1
MCO15G158 Micromonas commoda HOM05D004484 ORTHO05D005370 2.2e-44 184.9 521 28.4
SEGI_20047 Sequoiadendron giganteum HOM05D004484 ORTHO05D005370 3.1e-43 181.0 249 41.0
Carub.0004s0917 Capsella rubella HOM05D004484 ORTHO05D005370 7.7e-42 176.4 267 40.1
Hma1.2p1_0170F.1_g075250 Hydrangea macrophylla HOM05D004484 ORTHO05D005370 1.1e-40 172.6 202 51.0
Glyma.17G005802 Glycine max HOM05D004484 ORTHO05D005370 5.5e-40 170.2 192 52.6
CAN.G205.22 Capsicum annuum HOM05D004484 ORTHO05D005370 8.9e-38 162.9 96 80.2
SEGI_29754 Sequoiadendron giganteum HOM05D004484 ORTHO05D005370 9.8e-37 159.5 116 64.7
CAN.G388.14 Capsicum annuum HOM05D004484 ORTHO05D005370 9.2e-35 152.9 150 56.7
SHI38995 Sapria himalayana HOM05D004484 ORTHO05D005370 2.7e-34 151.4 126 62.7
TPR.G22633 Trifolium pratense HOM05D004484 ORTHO05D005370 1.7e-33 148.7 92 75.0
SGA_v2.0_scaffold65G22170 Striga asiatica HOM05D004484 ORTHO05D005370 8.6e-33 146.4 200 42.0
QL08p052505 Quercus lobata HOM05D004484 ORTHO05D005370 1.6e-31 142.1 178 46.6
Os03g0856200 Oryza sativa ssp. japonica HOM05D004484 ORTHO05D005370 4.7e-31 140.6 97 67.0
Eucgr.I00725 Eucalyptus grandis HOM05D004484 ORTHO05D005370 2.4e-27 128.3 82 73.2
Aa31LG10G5660 Aethionema arabicum HOM05D004484 ORTHO05D005370 4.1e-27 127.5 94 61.7
CAN.G279.6 Capsicum annuum HOM05D004484 ORTHO05D005370 1.6e-26 125.6 72 84.7
Solyc01g091440.4 Solanum lycopersicum HOM05D004484 ORTHO05D005370 8.9e-22 109.8 133 51.9
SGA_v2.0_scaffold10G05342 Striga asiatica HOM05D004484 ORTHO05D005370 5.8e-21 107.1 191 36.6
SGA_v2.0_scaffold172G39032 Striga asiatica HOM05D004484 ORTHO05D005370 1.1e-19 102.8 168 38.1
CAN.G321.48 Capsicum annuum HOM05D001267 ORTHO05D002376 3.9e-17 94.4 64 76.6
SGA_v2.0_scaffold29G12247 Striga asiatica HOM05D004484 ORTHO05D005370 1.1e-16 92.8 185 35.7
PRCOL_00002704 Prasinoderma coloniale HOM05D004484 ORTHO05D005370 2.5e-16 91.7 248 32.3
Glyma.06G243934 Glycine max HOM05D004484 ORTHO05D005370 2.1e-15 88.6 81 53.1
Glyma.06G244302 Glycine max HOM05D004484 ORTHO05D005370 6.2e-15 87.0 81 51.9
Eucgr.E01421 Eucalyptus grandis HOM05D004484 ORTHO05D005370 3.4e-13 81.3 62 64.5
TPR.G9848 Trifolium pratense HOM05D000164 ORTHO05D000096 3.7e-12 77.8 55 61.8
arahy.Tifrunner.gnm1.ann1.0F06NC Arachis hypogaea HOM05D004484 ORTHO05D005370 4.1e-11 74.3 47 70.2
Eucgr.L02075 Eucalyptus grandis HOM05D004484 ORTHO05D005370 5.4e-11 73.9 62 59.7
Oeu032522.1 Olea europaea HOM05D004484 ORTHO05D005370 3.5e-10 71.2 70 55.7
Cre10.g423800 Chlamydomonas reinhardtii HOM05D004484 ORTHO05D005370 1.9e-08 65.5 552 21.2
Hma1.2p1_1470F.1_g285600 Hydrangea macrophylla HOM05D000467 ORTHO05D011800 2.8e-07 61.6 52 59.6


User provided reference genes

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