Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0020955 Sechium edule HOM05D004484 ORTHO05D005370 0.0e+00 1364.0 696 100.0
CsaV3_3G009680 Cucumis sativus L. HOM05D004484 ORTHO05D005370 0.0e+00 1190.6 689 86.6
ClCG05G002220 Citrullus lanatus HOM05D004484 ORTHO05D005370 0.0e+00 1186.8 689 86.9
MELO3C006188.2 Cucumis melo HOM05D004484 ORTHO05D005370 0.0e+00 1152.9 654 87.8
CiPaw.01G262000 Carya illinoinensis HOM05D004484 ORTHO05D005370 8.3e-307 1056.6 689 75.0
QL08p052472 Quercus lobata HOM05D004484 ORTHO05D005370 9.2e-306 1053.1 687 75.8
Prupe.2G145600 Prunus persica HOM05D004484 ORTHO05D005370 1.9e-298 1028.9 689 74.3
Haze_16815 Corylus avellana HOM05D004484 ORTHO05D005370 2.0e-297 1025.4 746 69.2
Dinv32377 Davidia involucrata HOM05D004484 ORTHO05D005370 4.6e-297 1024.2 691 72.8
MD07G1121000 Malus domestica HOM05D004484 ORTHO05D005370 3.9e-296 1021.1 693 73.9
Hma1.2p1_0086F.1_g044870 Hydrangea macrophylla HOM05D004484 ORTHO05D005370 2.9e-291 1005.0 686 72.3
TWI23G0227 Tripterygium wilfordii HOM05D004484 ORTHO05D005370 5.4e-290 1000.7 687 72.2
Eucgr.E01418 Eucalyptus grandis HOM05D004484 ORTHO05D005370 3.5e-289 998.0 693 71.1
Potri.014G069700 Populus trichocarpa HOM05D004484 ORTHO05D005370 2.5e-287 991.9 689 72.1
Lj7A528T57 Lonicera japonica HOM05D004484 ORTHO05D005370 2.8e-286 988.4 699 72.1
Ca_19886_v3 Cicer arietinum L. HOM05D004484 ORTHO05D005370 8.1e-286 986.9 687 70.9
GSVIVG01027610001 Vitis vinifera HOM05D004484 ORTHO05D005370 8.1e-286 986.9 673 72.5
Nitab4.5_0000457g0330 Nicotiana tabacum HOM05D004484 ORTHO05D005370 1.4e-285 986.1 702 69.2
Cc02_g36700 Coffea canephora HOM05D004484 ORTHO05D005370 2.0e-284 982.2 687 70.7
HanXRQChr16g0520161 Helianthus annuus HOM05D004484 ORTHO05D005370 4.4e-284 981.1 687 70.2
FvH4_7g11900 Fragaria vesca HOM05D004484 ORTHO05D005370 5.8e-284 980.7 689 70.1
Atru.chr5.309 Acer truncatum HOM05D004484 ORTHO05D005370 1.7e-283 979.2 686 69.8
PGR042G0667 Punica granatum HOM05D004484 ORTHO05D005370 2.9e-283 978.4 691 70.6
FAN01G0628 Fragaria x ananassa HOM05D004484 ORTHO05D005370 4.9e-283 977.6 689 69.4
Oeu055487.1 Olea europaea HOM05D004484 ORTHO05D005370 1.4e-282 976.1 689 69.8
Medtr4g023560 Medicago truncatula HOM05D004484 ORTHO05D005370 1.2e-281 973.0 689 69.2
Lalb_Chr13g0291731 Lupinus albus HOM05D004484 ORTHO05D005370 1.6e-281 972.6 689 70.0
ECA234G1700 Erigeron canadensis HOM05D004484 ORTHO05D005370 2.7e-281 971.8 686 69.7
Manes.01G265900 Manihot esculenta HOM05D004484 ORTHO05D005370 2.7e-281 971.8 689 70.1
Lj3g0013484 Lotus japonicus HOM05D004484 ORTHO05D005370 6.0e-281 970.7 685 70.4
FAN10G1483 Fragaria x ananassa HOM05D004484 ORTHO05D005370 7.8e-281 970.3 689 69.7
FAN06G1787 Fragaria x ananassa HOM05D004484 ORTHO05D005370 3.0e-280 968.4 689 69.5
FAN06G3319 Fragaria x ananassa HOM05D004484 ORTHO05D005370 3.9e-280 968.0 689 69.4
FAN10G2369 Fragaria x ananassa HOM05D004484 ORTHO05D005370 3.9e-280 968.0 689 69.7
PGSC0003DMG400012761 Solanum tuberosum HOM05D004484 ORTHO05D005370 2.5e-279 965.3 702 67.5
Ca_27059_v3 Cicer arietinum L. HOM05D004484 ORTHO05D005370 5.6e-279 964.1 687 69.9
PSO478G5008 Papaver somniferum HOM05D004484 ORTHO05D005370 1.2e-278 963.0 689 69.2
Nn1g01233 Nelumbo nucifera HOM05D004484 ORTHO05D005370 4.7e-278 961.1 686 69.1
MSTRG.20748 Avicennia marina HOM05D004484 ORTHO05D005370 6.2e-278 960.7 689 69.1
Peaxi162Scf00021g01723 Petunia axillaris HOM05D004484 ORTHO05D005370 1.1e-277 959.9 687 68.4
Aqoxy5G00403 Aquilegia oxysepala HOM05D004484 ORTHO05D005370 1.8e-277 959.1 690 69.0
Thecc.01G376200 Theobroma cacao HOM05D004484 ORTHO05D005370 4.0e-277 958.0 688 68.6
Psat7g233440 Pisum sativum HOM05D004484 ORTHO05D005370 3.4e-276 954.9 687 68.4
CANSAT56G4533 Cannabis sativa HOM05D004484 ORTHO05D005370 5.8e-276 954.1 691 69.0
DCAR_015907 Daucus carota HOM05D004484 ORTHO05D005370 3.8e-275 951.4 689 68.1
Ciclev10019016m.g Citrus clementina HOM05D004484 ORTHO05D005370 8.4e-275 950.3 690 68.4
CSS0036976 Camellia sinensis var. sinensis HOM05D004484 ORTHO05D005370 2.4e-274 948.7 696 69.7
CAN.G388.13 Capsicum annuum HOM05D004484 ORTHO05D005370 2.4e-274 948.7 698 66.9
CANSAT56G1200 Cannabis sativa HOM05D004484 ORTHO05D005370 5.4e-274 947.6 691 68.6
Cpa.g.sc18.115 Carica papaya HOM05D004484 ORTHO05D005370 1.2e-273 946.4 689 67.6
Sc02g0002590 Simmondsia chinensis HOM05D004484 ORTHO05D005370 2.7e-273 945.3 673 69.5
arahy.Tifrunner.gnm1.ann1.V1M046 Arachis hypogaea HOM05D004484 ORTHO05D005370 3.5e-273 944.9 688 68.9
Migut.B01635 Erythranthe guttata HOM05D004484 ORTHO05D005370 3.5e-273 944.9 689 67.9
Glyma.05G125700 Glycine max HOM05D004484 ORTHO05D005370 3.5e-273 944.9 690 69.1
Nitab4.5_0005372g0070 Nicotiana tabacum HOM05D004484 ORTHO05D005370 1.3e-272 943.0 712 66.3
Solyc01g091350.4 Solanum lycopersicum HOM05D004484 ORTHO05D005370 1.3e-272 943.0 702 66.1
SGA_v2.0_scaffold153G37012 Striga asiatica HOM05D004484 ORTHO05D005370 1.3e-272 943.0 689 68.1
arahy.Tifrunner.gnm1.ann1.6K85L9 Arachis hypogaea HOM05D004484 ORTHO05D005370 3.0e-272 941.8 688 68.8
arahy.Tifrunner.gnm1.ann1.HW1IVJ Arachis hypogaea HOM05D004484 ORTHO05D005370 3.0e-272 941.8 688 68.8
TAR629G2468 Trochodendron aralioides HOM05D004484 ORTHO05D005370 5.1e-272 941.0 670 68.4
arahy.Tifrunner.gnm1.ann1.Q9SWB6 Arachis hypogaea HOM05D004484 ORTHO05D005370 6.6e-272 940.6 688 68.5
Sabra14G0049400 Salix brachista HOM05D004484 ORTHO05D005370 8.7e-272 940.3 703 68.1
Phvul.002G205800 Phaseolus vulgaris HOM05D004484 ORTHO05D005370 1.1e-271 939.9 684 68.4
Sopen01g037090 Solanum pennellii HOM05D004484 ORTHO05D005370 5.6e-271 937.6 702 65.4
EL10Ac1g00900 Beta vulgaris HOM05D004484 ORTHO05D005370 1.3e-270 936.4 710 66.3
AUR62004221 Chenopodium quinoa HOM05D004484 ORTHO05D005370 3.6e-270 934.9 721 66.7
MBI12_g10758_MAGBIO Magnolia biondii HOM05D004484 ORTHO05D005370 2.4e-269 932.2 717 66.8
Lsat_1_v5_gn_4_43240 Lactuca sativa HOM05D004484 ORTHO05D005370 1.2e-268 929.9 685 67.3
Lalb_Chr12g0208261 Lupinus albus HOM05D004484 ORTHO05D005370 1.4e-266 922.9 689 66.3
vmacro13399 Vaccinium macrocarpon HOM05D004484 ORTHO05D005370 2.4e-266 922.2 690 67.2
VMungo0251G1206 Vigna mungo HOM05D004484 ORTHO05D005370 6.7e-264 914.1 685 65.8
Gohir.A11G080700 Gossypium hirsutum HOM05D004484 ORTHO05D005370 1.6e-262 909.4 692 65.8
Gorai.007G091100 Gossypium raimondii HOM05D004484 ORTHO05D005370 6.2e-262 907.5 691 65.3
Gohir.D11G085300 Gossypium hirsutum HOM05D004484 ORTHO05D005370 6.9e-261 904.0 691 65.3
Cfa001721 Carpinus fangiana HOM05D004484 ORTHO05D005370 8.7e-256 887.1 584 74.5
FAN03G1897 Fragaria x ananassa HOM05D004484 ORTHO05D005370 3.3e-255 885.2 691 65.0
Ah.13g073490 Amaranthus hybridus HOM05D004484 ORTHO05D005370 2.6e-252 875.5 715 62.8
TPR.G9845 Trifolium pratense HOM05D004484 ORTHO05D005370 2.2e-251 872.5 718 62.8
Aqoxy3G02138 Aquilegia oxysepala HOM05D004484 ORTHO05D005370 1.4e-250 869.8 690 63.3
GSVIVG01027609001 Vitis vinifera HOM05D004484 ORTHO05D005370 5.3e-245 851.3 658 65.8
THA.LOC104817247 Tarenaya hassleriana HOM05D004484 ORTHO05D005370 1.6e-241 839.7 686 61.1
Sp1g35020 Schrenkiella parvula HOM05D004484 ORTHO05D005370 2.7e-241 839.0 677 60.9
AT1G48050 Arabidopsis thaliana HOM05D004484 ORTHO05D005370 6.7e-240 834.3 690 60.4
Carub.0001s3716 Capsella rubella HOM05D004484 ORTHO05D005370 8.8e-240 833.9 689 60.2
BcaB04g17469 Brassica carinata HOM05D004484 ORTHO05D005370 4.3e-239 831.6 690 60.0
AUR62013627 Chenopodium quinoa HOM05D004484 ORTHO05D005370 5.7e-239 831.2 705 62.7
BraSC267t45947Z Brassica rapa HOM05D004484 ORTHO05D005370 2.8e-238 828.9 685 59.6
CARHR037700 Cardamine hirsuta HOM05D004484 ORTHO05D005370 3.7e-238 828.6 690 60.3
BcaC07g37180 Brassica carinata HOM05D004484 ORTHO05D005370 2.4e-237 825.9 689 59.8
BolC8t47375H Brassica oleracea HOM05D004484 ORTHO05D005370 6.9e-237 824.3 685 59.7
C08p05620 Brassica napus HOM05D004484 ORTHO05D005370 9.1e-237 823.9 685 59.7
SHI13523 Sapria himalayana HOM05D004484 ORTHO05D005370 4.7e-233 811.6 662 63.0
AL1G54570 Arabidopsis lyrata HOM05D004484 ORTHO05D005370 8.8e-232 807.4 673 59.3
A08p05330 Brassica napus HOM05D004484 ORTHO05D005370 1.8e-229 799.7 665 59.2
Hund27347 Selenicereus undatus HOM05D004484 ORTHO05D005370 1.4e-221 773.5 606 65.3
COL.COLO4_07018 Corchorus olitorius HOM05D004484 ORTHO05D005370 2.0e-212 743.0 553 66.4
Zm00001eb064930 Zea mays HOM05D004484 ORTHO05D005370 3.5e-212 742.3 668 56.9
HPP92_027818 Vanilla planifolia HOM05D004484 ORTHO05D005370 3.8e-211 738.8 685 57.1
arahy.Tifrunner.gnm1.ann1.03ZR4A Arachis hypogaea HOM05D004484 ORTHO05D005370 2.3e-203 713.0 716 54.2
arahy.Tifrunner.gnm1.ann1.5WGS6V Arachis hypogaea HOM05D004484 ORTHO05D005370 1.1e-202 710.7 658 57.4
COL.COLO4_12548 Corchorus olitorius HOM05D004484 ORTHO05D005370 2.8e-201 706.1 710 52.4
arahy.Tifrunner.gnm1.ann1.5492A7 Arachis hypogaea HOM05D004484 ORTHO05D005370 2.3e-195 686.4 689 55.2
Hma1.2p1_0086F.1_g044880 Hydrangea macrophylla HOM05D004484 ORTHO05D005370 9.5e-194 681.0 459 73.6
Potri.002G148200 Populus trichocarpa HOM05D004484 ORTHO05D005370 3.6e-193 679.1 490 68.8
unitig_749.g13780 Utricularia gibba HOM05D004484 ORTHO05D005370 6.4e-190 668.3 572 60.0
arahy.Tifrunner.gnm1.ann1.T9R8PC Arachis hypogaea HOM05D004484 ORTHO05D005370 6.0e-188 661.8 690 53.6
Thhalv10011351m.g Eutrema salsugineum HOM05D004484 ORTHO05D005370 8.0e-185 651.4 669 52.6
Pp3c22_11100 Physcomitrium patens HOM05D004484 ORTHO05D005370 8.0e-185 651.4 703 49.1
Lj9C569T11 Lonicera japonica HOM05D004484 ORTHO05D005370 5.8e-183 645.2 468 67.9
CDE04G3156 Ceratophyllum demersum HOM05D004484 ORTHO05D005370 9.5e-178 627.9 675 50.1
Aa31LG10G5650 Aethionema arabicum HOM05D004484 ORTHO05D005370 3.7e-174 615.9 585 55.7
SMO367G0514 Selaginella moellendorffii HOM05D004484 ORTHO05D005370 7.1e-173 611.7 700 47.1
ATR0049G077 Amborella trichopoda HOM05D004484 ORTHO05D005370 5.6e-170 602.1 458 62.9
PGR119G1536 Punica granatum HOM05D004484 ORTHO05D005370 4.2e-165 585.9 516 58.7
Mapoly0129s0012 Marchantia polymorpha HOM05D004484 ORTHO05D005370 3.6e-161 572.8 632 46.4
RcHm_v2.0_Chr1g0350581 Rosa chinensis HOM05D004484 ORTHO05D005370 3.4e-159 566.2 381 73.0
AagrBONN_evm.TU.Sc2ySwM_368.3373 Anthoceros agrestis HOM05D004484 ORTHO05D005370 1.3e-142 511.1 689 40.5
RcHm_v2.0_Chr1g0350571 Rosa chinensis HOM05D004484 ORTHO05D005370 9.4e-117 425.2 295 71.9
CBR_g30081 Chara braunii HOM05D004484 ORTHO05D005370 1.1e-109 401.7 482 42.7
SHI38996 Sapria himalayana HOM05D004484 ORTHO05D005370 1.2e-82 312.0 203 73.4
SHI38095 Sapria himalayana HOM05D004484 ORTHO05D005370 6.8e-75 286.2 190 73.2
Hma1.2p1_0701F.1_g205850 Hydrangea macrophylla HOM05D004484 ORTHO05D005370 1.5e-74 285.0 268 56.7
SHI38094 Sapria himalayana HOM05D004484 ORTHO05D005370 5.4e-64 250.0 211 60.7
arahy.Tifrunner.gnm1.ann1.47H85H Arachis hypogaea HOM05D004484 ORTHO05D005370 4.7e-60 236.9 389 39.1
Glyma.06G243967 Glycine max HOM05D004484 ORTHO05D005370 6.6e-54 216.5 144 68.1
Glyma.01G142851 Glycine max HOM05D004484 ORTHO05D005370 7.6e-50 203.0 164 62.8
SEGI_20047 Sequoiadendron giganteum HOM05D004484 ORTHO05D005370 1.5e-45 188.7 221 45.2
Hma1.2p1_0170F.1_g075250 Hydrangea macrophylla HOM05D004484 ORTHO05D005370 2.2e-41 174.9 202 49.0
MCO15G158 Micromonas commoda HOM05D004484 ORTHO05D005370 2.9e-41 174.5 524 29.0
Carub.0004s0917 Capsella rubella HOM05D004484 ORTHO05D005370 6.4e-41 173.3 252 42.9
Glyma.17G005802 Glycine max HOM05D004484 ORTHO05D005370 7.1e-40 169.9 193 51.3
QL08p052505 Quercus lobata HOM05D004484 ORTHO05D005370 3.5e-39 167.5 170 54.7
SHI38995 Sapria himalayana HOM05D004484 ORTHO05D005370 5.1e-38 163.7 126 65.1
SEGI_29754 Sequoiadendron giganteum HOM05D004484 ORTHO05D005370 5.3e-35 153.7 116 62.9
CAN.G594.7 Capsicum annuum HOM05D004484 ORTHO05D005370 3.8e-33 147.5 105 64.8
SGA_v2.0_scaffold65G22170 Striga asiatica HOM05D004484 ORTHO05D005370 3.0e-30 137.9 201 40.3
TPR.G22633 Trifolium pratense HOM05D004484 ORTHO05D005370 1.1e-29 136.0 91 65.9
CAN.G205.22 Capsicum annuum HOM05D004484 ORTHO05D005370 5.6e-29 133.7 96 63.5
Os03g0856200 Oryza sativa ssp. japonica HOM05D004484 ORTHO05D005370 5.6e-29 133.7 97 64.9
Aa31LG10G5660 Aethionema arabicum HOM05D004484 ORTHO05D005370 5.8e-26 123.6 94 60.6
Eucgr.I00725 Eucalyptus grandis HOM05D004484 ORTHO05D005370 1.3e-25 122.5 82 68.3
Solyc01g091430.2 Solanum lycopersicum HOM05D004484 ORTHO05D005370 3.0e-22 111.3 108 56.5
CAN.G388.14 Capsicum annuum HOM05D004484 ORTHO05D005370 3.7e-20 104.4 72 65.3
CAN.G279.6 Capsicum annuum HOM05D004484 ORTHO05D005370 6.9e-19 100.1 72 63.9
Solyc01g091440.4 Solanum lycopersicum HOM05D004484 ORTHO05D005370 1.7e-17 95.5 133 43.6
SGA_v2.0_scaffold10G05342 Striga asiatica HOM05D004484 ORTHO05D005370 2.9e-17 94.7 168 36.3
Eucgr.E01421 Eucalyptus grandis HOM05D004484 ORTHO05D005370 1.4e-16 92.4 66 65.2
SGA_v2.0_scaffold172G39032 Striga asiatica HOM05D004484 ORTHO05D005370 2.5e-16 91.7 168 36.3
TPR.G9848 Trifolium pratense HOM05D000164 ORTHO05D000096 4.2e-16 90.9 55 78.2
Glyma.06G243934 Glycine max HOM05D004484 ORTHO05D005370 7.2e-16 90.1 81 53.1
Glyma.06G244302 Glycine max HOM05D004484 ORTHO05D005370 4.6e-15 87.4 117 42.7
Eucgr.L02075 Eucalyptus grandis HOM05D004484 ORTHO05D005370 5.1e-14 84.0 64 62.5
SGA_v2.0_scaffold29G12247 Striga asiatica HOM05D004484 ORTHO05D005370 5.1e-14 84.0 186 33.3
PRCOL_00002704 Prasinoderma coloniale HOM05D004484 ORTHO05D005370 2.2e-12 78.6 264 29.2
arahy.Tifrunner.gnm1.ann1.0F06NC Arachis hypogaea HOM05D004484 ORTHO05D005370 3.1e-11 74.7 48 70.8
CAN.G321.48 Capsicum annuum HOM05D001267 ORTHO05D002376 1.2e-10 72.8 62 56.5
Hma1.2p1_1470F.1_g285600 Hydrangea macrophylla HOM05D000467 ORTHO05D011800 1.4e-08 65.9 48 66.7
Cre10.g423800 Chlamydomonas reinhardtii HOM05D004484 ORTHO05D005370 7.9e-07 60.1 170 28.2
AagrBONN_evm.TU.Sc2ySwM_368.3370 Anthoceros agrestis HOM05D004484 ORTHO05D005370 1.0e-06 59.7 111 30.6
Oeu032522.1 Olea europaea HOM05D004484 ORTHO05D005370 2.3e-06 58.5 47 61.7


User provided reference genes

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