Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra17G0036800 Salix brachista HOM05D000113 ORTHO05D015799 1.9e-150 535.8 264 100.0
Sabra17G0042200 Salix brachista HOM05D000113 ORTHO05D015799 1.9e-150 535.8 264 100.0
Manes.10G103500 Manihot esculenta HOM05D000113 ORTHO05D005496 5.1e-39 165.6 196 45.9
Actinidia00283 Actinidia chinensis HOM05D000298 ORTHO05D015799 3.6e-37 159.5 193 40.9
Dinv24167 Davidia involucrata HOM05D000113 ORTHO05D005496 1.7e-34 150.6 194 39.7
CSS0007444 Camellia sinensis var. sinensis HOM05D000113 ORTHO05D005496 2.5e-30 136.7 195 37.4
CSS0032648 Camellia sinensis var. sinensis HOM05D000113 ORTHO05D005496 2.5e-30 136.7 195 37.4
CSS0007191 Camellia sinensis var. sinensis HOM05D000113 ORTHO05D005496 7.4e-30 135.2 193 37.8
Aqoxy4G02794 Aquilegia oxysepala HOM05D000113 ORTHO05D005496 8.1e-29 131.7 201 38.3
CANSAT01G0367 Cannabis sativa HOM05D000113 ORTHO05D005496 1.1e-28 131.3 201 38.8
Nn5g29984 Nelumbo nucifera HOM05D000113 ORTHO05D005496 1.8e-28 130.6 197 36.5
Lj2C539T1 Lonicera japonica HOM05D000113 ORTHO05D005496 2.4e-28 130.2 198 34.8
Hma1.2p1_0225F.1_g094940 Hydrangea macrophylla HOM05D000113 ORTHO05D015799 5.3e-28 129.0 206 37.4
Dinv09001 Davidia involucrata HOM05D000113 ORTHO05D005496 9.0e-28 128.3 194 33.0
Sc03g0000190 Simmondsia chinensis HOM05D000113 ORTHO05D005496 9.0e-28 128.3 203 35.5
CAN.G525.46 Capsicum annuum HOM05D000113 ORTHO05D005496 2.6e-27 126.7 198 38.4
Duzib147G1158 Durio zibethinus HOM05D000113 ORTHO05D005496 3.4e-27 126.3 202 39.1
Sopen04g006310 Solanum pennellii HOM05D000113 ORTHO05D005496 7.6e-27 125.2 200 35.0
MELO3C018998.2 Cucumis melo HOM05D000113 ORTHO05D005496 9.9e-27 124.8 205 34.1
MBI06_g03318_MAGBIO Magnolia biondii HOM05D000113 ORTHO05D005496 1.7e-26 124.0 197 34.0
Solyc04g014210.3 Solanum lycopersicum HOM05D000113 ORTHO05D005496 1.7e-26 124.0 200 35.0
Sopen11g005090 Solanum pennellii HOM05D000113 ORTHO05D005496 1.7e-26 124.0 194 33.0
PGSC0003DMG400016218 Solanum tuberosum HOM05D000113 ORTHO05D005496 2.2e-26 123.6 182 34.1
ClCG10G008390 Citrullus lanatus HOM05D000113 ORTHO05D005496 2.9e-26 123.2 211 34.1
TAR628G1021 Trochodendron aralioides HOM05D000113 ORTHO05D005496 2.9e-26 123.2 208 36.5
Nitab4.5_0005930g0010 Nicotiana tabacum HOM05D000113 ORTHO05D005496 6.4e-26 122.1 197 33.0
FAN26G3479 Fragaria x ananassa HOM05D000113 ORTHO05D005496 8.4e-26 121.7 200 35.0
Phvul.001G254100 Phaseolus vulgaris HOM05D000113 ORTHO05D005496 1.1e-25 121.3 196 35.2
Actinidia06536 Actinidia chinensis HOM05D000113 ORTHO05D005496 1.4e-25 120.9 204 34.3
ATR0807G003 Amborella trichopoda HOM05D000113 ORTHO05D005496 1.4e-25 120.9 203 36.5
Gorai.011G111000 Gossypium raimondii HOM05D000113 ORTHO05D005496 1.4e-25 120.9 204 38.7
Sed0023847 Sechium edule HOM05D000113 ORTHO05D005496 1.4e-25 120.9 199 33.7
PGSC0003DMG400023635 Solanum tuberosum HOM05D000113 ORTHO05D005496 1.4e-25 120.9 202 34.7
Cpa.g.sc55.68 Carica papaya HOM05D000113 ORTHO05D015799 1.9e-25 120.6 206 35.0
FAN19G2146 Fragaria x ananassa HOM05D000113 ORTHO05D005496 1.9e-25 120.6 201 35.8
MBI02_g10702_MAGBIO Magnolia biondii HOM05D000113 ORTHO05D005496 1.9e-25 120.6 200 35.0
QL06p047959 Quercus lobata HOM05D000113 ORTHO05D005496 1.9e-25 120.6 197 35.0
Thecc.01G095200 Theobroma cacao HOM05D000113 ORTHO05D005496 1.9e-25 120.6 202 37.6
Nn5g29734 Nelumbo nucifera HOM05D000113 ORTHO05D005496 2.4e-25 120.2 198 32.3
Prupe.6G193800 Prunus persica HOM05D000113 ORTHO05D005496 2.4e-25 120.2 195 36.9
Solyc11g010310.2 Solanum lycopersicum HOM05D000113 ORTHO05D005496 3.2e-25 119.8 194 32.0
RcHm_v2.0_Chr2g0112281 Rosa chinensis HOM05D000113 ORTHO05D005496 4.2e-25 119.4 203 36.5
vmacro12989 Vaccinium macrocarpon HOM05D000113 ORTHO05D005496 4.2e-25 119.4 192 33.9
A03p04500 Brassica napus HOM05D000113 ORTHO05D005496 5.5e-25 119.0 196 37.2
C03p05000 Brassica napus HOM05D000113 ORTHO05D005496 5.5e-25 119.0 196 37.8
Glyma.18G014800 Glycine max HOM05D000113 ORTHO05D005496 7.1e-25 118.6 196 36.2
Lsat_1_v5_gn_5_44701 Lactuca sativa HOM05D000113 ORTHO05D005496 7.1e-25 118.6 202 34.7
BraA03t09794Z Brassica rapa HOM05D000113 ORTHO05D005496 9.3e-25 118.2 196 37.2
Gohir.A10G087100 Gossypium hirsutum HOM05D000113 ORTHO05D005496 9.3e-25 118.2 203 36.9
Nitab4.5_0000241g0130 Nicotiana tabacum HOM05D000113 ORTHO05D005496 9.3e-25 118.2 197 33.5
FvH4_1g20200 Fragaria vesca HOM05D000113 ORTHO05D005496 1.2e-24 117.9 201 35.8
MD15G1318100 Malus domestica HOM05D000113 ORTHO05D005496 1.6e-24 117.5 198 35.4
CSS0043991 Camellia sinensis var. sinensis HOM05D000113 ORTHO05D005496 2.1e-24 117.1 199 35.2
FAN28G1056 Fragaria x ananassa HOM05D000113 ORTHO05D005496 2.1e-24 117.1 201 34.8
Lj6g0026739 Lotus japonicus HOM05D000113 ORTHO05D005496 2.1e-24 117.1 199 34.2
AUR62003267 Chenopodium quinoa HOM05D000113 ORTHO05D005496 2.7e-24 116.7 201 35.3
ECA246G2046 Erigeron canadensis HOM05D000004 ORTHO05D000002 2.7e-24 116.7 202 32.7
Gohir.D10G101300 Gossypium hirsutum HOM05D000113 ORTHO05D005496 2.7e-24 116.7 204 37.7
Lj5g0010678 Lotus japonicus HOM05D000113 ORTHO05D005496 2.7e-24 116.7 198 33.8
PSO700G0222 Papaver somniferum HOM05D000113 ORTHO05D005496 2.7e-24 116.7 196 33.2
BcaB01g05540 Brassica carinata HOM05D000113 ORTHO05D005496 3.5e-24 116.3 196 37.2
CiPaw.04G104000 Carya illinoinensis HOM05D000113 ORTHO05D005496 3.5e-24 116.3 199 32.7
Atru.chr3.1340 Acer truncatum HOM05D000113 ORTHO05D005496 6.0e-24 115.5 207 35.3
AUR62027200 Chenopodium quinoa HOM05D000113 ORTHO05D005496 7.9e-24 115.2 199 35.2
Hund14100 Selenicereus undatus HOM05D000113 ORTHO05D005496 7.9e-24 115.2 207 35.7
FAN23G0752 Fragaria x ananassa HOM05D000113 ORTHO05D005496 1.0e-23 114.8 201 34.3
Rhsim10G0168800 Rhododendron simsii HOM05D000113 ORTHO05D005496 1.0e-23 114.8 200 34.5
AL6G20870 Arabidopsis lyrata HOM05D000113 ORTHO05D005496 1.3e-23 114.4 196 36.7
BcaB06g26888 Brassica carinata HOM05D000113 ORTHO05D005496 1.8e-23 114.0 198 36.4
Ca_16506_v3 Cicer arietinum L. HOM05D000113 ORTHO05D005496 1.8e-23 114.0 199 35.7
Ca_30638_v3 Cicer arietinum L. HOM05D000113 ORTHO05D005496 1.8e-23 114.0 199 35.7
BolC3t13030H Brassica oleracea HOM05D000113 ORTHO05D005496 2.3e-23 113.6 196 36.2
PSO761G0046 Papaver somniferum HOM05D000113 ORTHO05D005496 3.0e-23 113.2 200 30.5
TWI77G0223 Tripterygium wilfordii HOM05D000113 ORTHO05D005496 3.9e-23 112.8 203 33.0
Psat0s1386g0040 Pisum sativum HOM05D000113 ORTHO05D005496 5.1e-23 112.5 199 35.2
Duzib264G0979 Durio zibethinus HOM05D000113 ORTHO05D005496 6.7e-23 112.1 204 35.8
Migut.H02323 Erythranthe guttata HOM05D000113 ORTHO05D005496 6.7e-23 112.1 198 31.3
AT4G01020 Arabidopsis thaliana HOM05D000113 ORTHO05D005496 8.7e-23 111.7 206 35.9
Cc07_g14540 Coffea canephora HOM05D000113 ORTHO05D005496 8.7e-23 111.7 187 34.2
HPP92_010964 Vanilla planifolia HOM05D000113 ORTHO05D005496 8.7e-23 111.7 203 32.0
Aa31LG3G16810 Aethionema arabicum HOM05D000113 ORTHO05D005496 1.1e-22 111.3 196 37.8
AT5G10370 Arabidopsis thaliana HOM05D000113 ORTHO05D005496 1.1e-22 111.3 200 38.0
Ah.02g126230 Amaranthus hybridus HOM05D000113 ORTHO05D005496 1.5e-22 110.9 198 34.8
Thhalv10012419m.g Eutrema salsugineum HOM05D000113 ORTHO05D005496 1.5e-22 110.9 203 35.0
HanXRQChr15g0469421 Helianthus annuus HOM05D000113 ORTHO05D005496 1.9e-22 110.5 200 32.5
Medtr3g086770 Medicago truncatula HOM05D000113 ORTHO05D005496 1.9e-22 110.5 199 33.2
Sp6g33080 Schrenkiella parvula HOM05D000113 ORTHO05D005496 1.9e-22 110.5 199 37.2
A10p27230 Brassica napus HOM05D000113 ORTHO05D005496 2.5e-22 110.2 195 35.9
Gorai.003G041600 Gossypium raimondii HOM05D000113 ORTHO05D005496 2.5e-22 110.2 208 33.7
THA.LOC104798664 Tarenaya hassleriana HOM05D000113 ORTHO05D005496 2.5e-22 110.2 201 33.8
Gohir.D03G040800 Gossypium hirsutum HOM05D000113 ORTHO05D005496 3.3e-22 109.8 208 33.2
BcaC04g19309 Brassica carinata HOM05D000113 ORTHO05D005496 5.6e-22 109.0 195 35.9
C09p67040 Brassica napus HOM05D000113 ORTHO05D005496 5.6e-22 109.0 195 36.4
BolC9t59477H Brassica oleracea HOM05D000113 ORTHO05D005496 5.6e-22 109.0 195 36.4
Carub.0006s0884 Capsella rubella HOM05D000113 ORTHO05D005496 7.4e-22 108.6 200 36.5
Haze_24829 Corylus avellana HOM05D000113 ORTHO05D005496 1.3e-21 107.8 201 32.8
CiPaw.03G146200 Carya illinoinensis HOM05D000113 ORTHO05D005496 2.1e-21 107.1 206 29.1
Haze_24824 Corylus avellana HOM05D000113 ORTHO05D005496 2.1e-21 107.1 205 32.7
SGA_v2.0_scaffold421G51436 Striga asiatica HOM05D000113 ORTHO05D005496 2.1e-21 107.1 195 31.8
EL10Ac6g14815 Beta vulgaris HOM05D000113 ORTHO05D005496 4.8e-21 105.9 202 32.7
Cfa002587 Carpinus fangiana HOM05D000113 ORTHO05D005496 4.8e-21 105.9 201 33.3
BcaB06g26904 Brassica carinata HOM05D000113 ORTHO05D015799 1.1e-20 104.8 192 35.4
Ciclev10024688m.g Citrus clementina HOM05D000113 ORTHO05D005496 1.1e-20 104.8 204 31.9
MD01G1036600 Malus domestica HOM05D000113 ORTHO05D005496 1.1e-20 104.8 199 34.2
Peaxi162Scf00569g00315 Petunia axillaris HOM05D000113 ORTHO05D005496 2.4e-20 103.6 203 32.0
MSTRG.2587 Avicennia marina HOM05D000113 ORTHO05D005496 3.1e-20 103.2 195 29.7
BraA10t44773Z Brassica rapa HOM05D000113 ORTHO05D005496 4.0e-20 102.8 195 33.3
PGR102G0466 Punica granatum HOM05D000113 ORTHO05D005496 4.0e-20 102.8 201 30.8
SGA_v2.0_scaffold108G30899 Striga asiatica HOM05D000113 ORTHO05D005496 5.3e-20 102.4 195 32.8
CDE10G1216 Ceratophyllum demersum HOM05D000113 ORTHO05D005496 6.9e-20 102.1 199 34.2
Potri.005G071500 Populus trichocarpa HOM05D000113 ORTHO05D005496 6.9e-20 102.1 212 31.1
Lalb_Chr23g0277561 Lupinus albus HOM05D000113 ORTHO05D005496 1.2e-19 101.3 204 31.9
Sabra05G0058500 Salix brachista HOM05D000113 ORTHO05D005496 1.2e-19 101.3 208 33.7
CDE10G1326 Ceratophyllum demersum HOM05D000113 ORTHO05D015799 1.5e-19 100.9 204 34.3
TPR.G1396 Trifolium pratense HOM05D000113 ORTHO05D005496 2.0e-19 100.5 208 30.8
VMungo1383G1146 Vigna mungo HOM05D000113 ORTHO05D005496 2.0e-19 100.5 204 32.8
Lalb_Chr08g0230951 Lupinus albus HOM05D000113 ORTHO05D005496 3.4e-19 99.8 201 29.9
Peaxi162Scf00237g01219 Petunia axillaris HOM05D000113 ORTHO05D005496 5.8e-19 99.0 176 30.7
TPR.G30542 Trifolium pratense HOM05D000113 ORTHO05D005496 7.6e-19 98.6 180 33.3
unitig_899.g14557 Utricularia gibba HOM05D000113 ORTHO05D005496 7.6e-19 98.6 198 33.3
arahy.Tifrunner.gnm1.ann1.KS9FMV Arachis hypogaea HOM05D000113 ORTHO05D005496 1.3e-18 97.8 215 32.6
BcaB06g26897 Brassica carinata HOM05D000113 ORTHO05D005496 1.3e-18 97.8 161 36.6
Medtr3g014030 Medicago truncatula HOM05D000113 ORTHO05D005496 2.2e-18 97.1 199 32.2
SalBow1G6336 Salvia bowleyana HOM05D000113 ORTHO05D005496 2.2e-18 97.1 199 31.7
arahy.Tifrunner.gnm1.ann1.FHUE8B Arachis hypogaea HOM05D000113 ORTHO05D005496 8.4e-18 95.1 216 34.3
CsaV3_4G009030 Cucumis sativus L. HOM05D000113 ORTHO05D005496 2.1e-16 90.5 141 33.3
DCAR_014198 Daucus carota HOM05D000113 ORTHO05D005496 1.8e-15 87.4 203 29.6
COL.COLO4_27299 Corchorus olitorius HOM05D000113 ORTHO05D005496 1.9e-14 84.0 184 30.4
BcaB08g37113 Brassica carinata HOM05D000113 ORTHO05D005496 3.3e-14 83.2 201 31.8
Hma1.2p1_0019F.1_g013860 Hydrangea macrophylla HOM05D000113 ORTHO05D015799 2.8e-13 80.1 138 31.2
Mapoly0046s0024 Marchantia polymorpha HOM05D000113 ORTHO05D005496 1.3e-10 71.2 195 27.7


User provided reference genes

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