Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra07G0103600 Salix brachista HOM05D004358 ORTHO05D004960 3.1e-218 761.5 385 100.0
Potri.007G127600 Populus trichocarpa HOM05D004358 ORTHO05D004960 4.8e-179 631.3 386 85.8
Cfa015153 Carpinus fangiana HOM05D004358 ORTHO05D004960 1.2e-129 467.2 372 66.1
Dinv22724 Davidia involucrata HOM05D004358 ORTHO05D004960 3.8e-128 462.2 368 67.7
Manes.04G041200 Manihot esculenta HOM05D004358 ORTHO05D004960 5.0e-128 461.8 377 66.3
GSVIVG01010748001 Vitis vinifera HOM05D004358 ORTHO05D004960 3.0e-125 452.6 362 66.3
Ciclev10020813m.g Citrus clementina HOM05D004358 ORTHO05D004960 1.7e-123 446.8 361 65.9
Duzib151G0384 Durio zibethinus HOM05D004358 ORTHO05D004960 6.3e-123 444.9 370 65.9
COL.COLO4_02723 Corchorus olitorius HOM05D004358 ORTHO05D004960 1.4e-122 443.7 368 64.1
MD04G1007400 Malus domestica HOM05D004358 ORTHO05D004960 1.8e-122 443.4 387 62.0
TWI59G0142 Tripterygium wilfordii HOM05D004358 ORTHO05D004960 2.3e-120 436.4 367 64.9
Actinidia39855 Actinidia chinensis HOM05D004358 ORTHO05D004960 3.8e-120 435.6 384 61.2
Prupe.1G191600 Prunus persica HOM05D004358 ORTHO05D004960 2.0e-116 423.3 370 61.9
TAR362G1164 Trochodendron aralioides HOM05D004358 ORTHO05D004960 2.2e-115 419.9 361 62.0
Nitab4.5_0005570g0020 Nicotiana tabacum HOM05D004358 ORTHO05D004960 1.4e-114 417.2 385 61.0
CiPaw.02G055200 Carya illinoinensis HOM05D004358 ORTHO05D004960 2.4e-114 416.4 364 62.1
RcHm_v2.0_Chr4g0407021 Rosa chinensis HOM05D004358 ORTHO05D004960 1.0e-112 411.0 361 61.5
Gorai.011G146700 Gossypium raimondii HOM05D004358 ORTHO05D004960 8.6e-112 407.9 368 62.0
vmacro15647 Vaccinium macrocarpon HOM05D004358 ORTHO05D004960 1.9e-111 406.8 437 53.8
Sopen06g029780 Solanum pennellii HOM05D004358 ORTHO05D004960 2.5e-111 406.4 374 59.9
PSO732G0278 Papaver somniferum HOM05D004358 ORTHO05D004960 5.6e-111 405.2 366 62.0
PSO675G5046 Papaver somniferum HOM05D004358 ORTHO05D004960 1.6e-110 403.7 365 60.3
PGR142G0453 Punica granatum HOM05D004358 ORTHO05D004960 2.8e-110 402.9 385 59.5
AL4G26720 Arabidopsis lyrata HOM05D004358 ORTHO05D004960 4.7e-110 402.1 359 59.6
MSTRG.6615 Avicennia marina HOM05D004358 ORTHO05D004960 4.7e-110 402.1 369 59.9
CAN.G65.181 Capsicum annuum HOM05D004358 ORTHO05D004960 8.0e-110 401.4 339 63.7
THA.LOC104827388 Tarenaya hassleriana HOM05D004358 ORTHO05D004960 3.0e-109 399.4 333 64.6
Solyc06g073400.3 Solanum lycopersicum HOM05D004358 ORTHO05D004960 5.2e-109 398.7 368 60.1
Glyma.11G128600 Glycine max HOM05D004358 ORTHO05D004960 3.4e-108 396.0 364 62.1
CARHR125100 Cardamine hirsuta HOM05D004358 ORTHO05D004960 7.5e-108 394.8 364 59.9
Rhsim02G0076600 Rhododendron simsii HOM05D004358 ORTHO05D004960 7.5e-108 394.8 525 46.9
AT2G31450 Arabidopsis thaliana HOM05D004358 ORTHO05D004960 1.7e-107 393.7 358 60.1
Aa31LG5G5430 Aethionema arabicum HOM05D004358 ORTHO05D004960 4.9e-107 392.1 357 60.2
Thhalv10016815m.g Eutrema salsugineum HOM05D004358 ORTHO05D004960 6.4e-107 391.7 357 59.7
SalBow7G0323 Salvia bowleyana HOM05D004358 ORTHO05D004960 6.4e-107 391.7 380 55.3
CANSAT78G2120 Cannabis sativa HOM05D004358 ORTHO05D004960 1.4e-106 390.6 372 60.8
Peaxi162Scf00375g00513 Petunia axillaris HOM05D004358 ORTHO05D004960 2.4e-106 389.8 385 57.7
arahy.Tifrunner.gnm1.ann1.CJKM5C Arachis hypogaea HOM05D004358 ORTHO05D004960 4.1e-106 389.0 376 58.2
PSO732G0822 Papaver somniferum HOM05D004358 ORTHO05D004960 5.4e-106 388.7 388 57.2
Lalb_Chr01g0003211 Lupinus albus HOM05D004358 ORTHO05D004960 9.2e-106 387.9 359 59.3
FAN12G4165 Fragaria x ananassa HOM05D004358 ORTHO05D004960 1.2e-105 387.5 324 63.0
CSS0013619 Camellia sinensis var. sinensis HOM05D004358 ORTHO05D004960 1.6e-105 387.1 368 56.8
FvH4_4g10690 Fragaria vesca HOM05D004358 ORTHO05D004960 1.6e-105 387.1 324 63.0
Carub.0004s1278 Capsella rubella HOM05D004358 ORTHO05D004960 4.6e-105 385.6 354 59.0
Thecc.04G185400 Theobroma cacao HOM05D004358 ORTHO05D004960 7.8e-105 384.8 367 59.9
SGA_v2.0_scaffold181G39728 Striga asiatica HOM05D004358 ORTHO05D004960 1.7e-104 383.6 366 59.0
Gohir.D10G133000 Gossypium hirsutum HOM05D004358 ORTHO05D004960 2.3e-104 383.3 365 59.5
FAN12G1706 Fragaria x ananassa HOM05D004358 ORTHO05D004960 3.0e-104 382.9 301 66.4
Lj3g0009399 Lotus japonicus HOM05D004358 ORTHO05D004960 5.0e-104 382.1 364 61.0
FAN07G2248 Fragaria x ananassa HOM05D004358 ORTHO05D004960 1.1e-103 380.9 345 59.4
Atru.chr3.1531 Acer truncatum HOM05D004358 ORTHO05D004960 1.5e-103 380.6 249 74.7
Hund03152 Selenicereus undatus HOM05D004358 ORTHO05D004960 1.5e-103 380.6 370 58.1
Phvul.011G055100 Phaseolus vulgaris HOM05D004358 ORTHO05D004960 2.5e-103 379.8 304 65.8
Sc13g0005360 Simmondsia chinensis HOM05D004358 ORTHO05D004960 2.5e-103 379.8 363 57.9
Cc00_g17220 Coffea canephora HOM05D004358 ORTHO05D004960 7.3e-103 378.3 363 58.4
VMungo1127G0908 Vigna mungo HOM05D004358 ORTHO05D004960 9.5e-103 377.9 337 62.6
BolC3t14451H Brassica oleracea HOM05D004358 ORTHO05D004960 3.6e-102 375.9 366 57.4
MELO3C017721.2 Cucumis melo HOM05D004358 ORTHO05D004960 6.2e-102 375.2 390 55.6
C03p20720 Brassica napus HOM05D004358 ORTHO05D004960 1.1e-101 374.4 355 58.0
BcaC01g05950 Brassica carinata HOM05D004358 ORTHO05D004960 1.4e-101 374.0 356 57.3
BcaB01g04044 Brassica carinata HOM05D004358 ORTHO05D004960 2.3e-101 373.2 380 55.0
Sp4g13930 Schrenkiella parvula HOM05D004358 ORTHO05D004960 2.3e-101 373.2 357 57.7
Psat7g213960 Pisum sativum HOM05D004358 ORTHO05D004960 3.1e-101 372.9 377 57.3
AL1G15860 Arabidopsis lyrata HOM05D004358 ORTHO05D004960 5.2e-101 372.1 334 59.0
CsaV3_4G003300 Cucumis sativus L. HOM05D004358 ORTHO05D004960 6.8e-101 371.7 389 55.3
A03p17630 Brassica napus HOM05D004358 ORTHO05D004960 2.0e-100 370.2 384 54.4
TPR.G34203 Trifolium pratense HOM05D004358 ORTHO05D004960 2.6e-100 369.8 303 65.3
BraA03t11028Z Brassica rapa HOM05D004358 ORTHO05D004960 3.4e-100 369.4 377 54.6
Ah.13g072910 Amaranthus hybridus HOM05D004358 ORTHO05D004960 1.3e-99 367.5 371 53.6
Medtr4g067060 Medicago truncatula HOM05D004358 ORTHO05D004960 1.3e-99 367.5 352 58.5
unitig_8.g4603 Utricularia gibba HOM05D004358 ORTHO05D004960 2.2e-99 366.7 248 72.2
Atru.chr3.1534 Acer truncatum HOM05D004358 ORTHO05D004960 4.9e-99 365.5 256 71.5
Carub.0001s0527 Capsella rubella HOM05D004358 ORTHO05D004960 6.4e-99 365.2 369 55.6
BolC8t52682H Brassica oleracea HOM05D004358 ORTHO05D004960 1.9e-98 363.6 369 55.6
A09p67250 Brassica napus HOM05D004358 ORTHO05D004960 2.4e-98 363.2 304 61.8
AT1G05900 Arabidopsis thaliana HOM05D004358 ORTHO05D004960 5.4e-98 362.1 349 57.3
HanXRQChr06g0172341 Helianthus annuus HOM05D004358 ORTHO05D004960 5.4e-98 362.1 343 57.4
BraA09t42058Z Brassica rapa HOM05D004358 ORTHO05D005739 7.0e-98 361.7 304 61.5
Thhalv10007955m.g Eutrema salsugineum HOM05D004358 ORTHO05D004960 1.6e-97 360.5 372 55.9
Sed0019525 Sechium edule HOM05D004358 ORTHO05D004960 1.6e-97 360.5 387 54.5
TAR636G1513 Trochodendron aralioides HOM05D004358 ORTHO05D004960 6.0e-97 358.6 250 71.6
AUR62015399 Chenopodium quinoa HOM05D004358 ORTHO05D004960 5.0e-96 355.5 366 54.9
C08p51540 Brassica napus HOM05D004358 ORTHO05D004960 8.6e-96 354.8 366 54.6
Ca_20780_v3 Cicer arietinum L. HOM05D004358 ORTHO05D004960 5.6e-95 352.1 305 62.3
Ciclev10020816m.g Citrus clementina HOM05D004358 ORTHO05D004960 2.8e-94 349.7 363 54.0
AUR62002292 Chenopodium quinoa HOM05D004358 ORTHO05D004960 2.3e-93 346.7 271 64.6
Lsat_1_v5_gn_8_80540 Lactuca sativa HOM05D004358 ORTHO05D004960 5.2e-93 345.5 367 54.0
ECA236G3148 Erigeron canadensis HOM05D004358 ORTHO05D004960 2.0e-92 343.6 350 52.6
BcaC07g42102 Brassica carinata HOM05D004358 ORTHO05D004960 4.4e-92 342.4 366 51.9
EL10Ac3g05922 Beta vulgaris HOM05D004358 ORTHO05D004960 1.3e-91 340.9 395 50.6
ATR0686G198 Amborella trichopoda HOM05D004358 ORTHO05D004960 8.3e-91 338.2 334 53.6
ECA236G1172 Erigeron canadensis HOM05D004358 ORTHO05D004960 8.3e-91 338.2 316 58.5
Aqoxy7G00192 Aquilegia oxysepala HOM05D004358 ORTHO05D004960 6.0e-89 332.0 358 56.4
arahy.Tifrunner.gnm1.ann1.Z962T9 Arachis hypogaea HOM05D004358 ORTHO05D004960 3.0e-88 329.7 373 52.3
SHI24906 Sapria himalayana HOM05D004358 ORTHO05D004960 8.6e-88 328.2 347 53.0
arahy.Tifrunner.gnm1.ann1.VZ0ARL Arachis hypogaea HOM05D004358 ORTHO05D004960 3.3e-87 326.2 261 63.6
Eucgr.H00376 Eucalyptus grandis HOM05D004358 ORTHO05D004960 7.3e-87 325.1 194 80.4
QL10p048514 Quercus lobata HOM05D004358 ORTHO05D004960 7.3e-87 325.1 189 82.0
Nitab4.5_0003132g0140 Nicotiana tabacum HOM05D004358 ORTHO05D004960 1.6e-86 323.9 379 53.6
PGSC0003DMG401006099 Solanum tuberosum HOM05D004358 ORTHO05D004960 5.2e-85 318.9 337 52.5
Lj3g0017360 Lotus japonicus HOM05D004358 ORTHO05D004960 1.2e-84 317.8 243 65.0
Nitab4.5_0001787g0060 Nicotiana tabacum HOM05D004358 ORTHO05D004960 3.4e-84 316.2 392 48.2
Peaxi162Scf00058g01717 Petunia axillaris HOM05D004358 ORTHO05D004960 3.4e-84 316.2 363 49.0
Hund03151 Selenicereus undatus HOM05D004358 ORTHO05D004960 4.4e-84 315.8 297 56.2
Haze_01520 Corylus avellana HOM05D004358 ORTHO05D004960 5.8e-84 315.5 225 70.2
Zm00001eb406830 Zea mays HOM05D004358 ORTHO05D004960 7.6e-84 315.1 374 48.7
Glyma.13G343700 Glycine max HOM05D004358 ORTHO05D004960 3.8e-83 312.8 277 58.5
CAN.G749.19 Capsicum annuum HOM05D004358 ORTHO05D004960 4.9e-83 312.4 321 53.3
Phvul.005G152500 Phaseolus vulgaris HOM05D004358 ORTHO05D004960 2.4e-82 310.1 268 60.4
Sopen09g031880 Solanum pennellii HOM05D004358 ORTHO05D004960 5.4e-82 308.9 356 49.7
Ca_01263_v3 Cicer arietinum L. HOM05D004358 ORTHO05D004960 6.0e-81 305.4 250 62.8
Medtr2g098660 Medicago truncatula HOM05D004358 ORTHO05D004960 1.0e-80 304.7 317 53.6
CARHR005460 Cardamine hirsuta HOM05D004358 ORTHO05D004960 3.9e-80 302.8 189 76.7
Nitab4.5_0000941g0030 Nicotiana tabacum HOM05D004358 ORTHO05D004960 1.5e-79 300.8 389 47.6
SMO347G0587 Selaginella moellendorffii HOM05D004358 ORTHO05D004960 5.6e-79 298.9 244 60.2
Nn1g09578 Nelumbo nucifera HOM05D004358 ORTHO05D004960 3.6e-78 296.2 185 75.1
arahy.Tifrunner.gnm1.ann1.98UW30 Arachis hypogaea HOM05D004358 ORTHO05D004960 6.9e-77 292.0 229 63.8
DCAR_028143 Daucus carota HOM05D004358 ORTHO05D004960 6.9e-77 292.0 197 71.6
ClCG07G015600 Citrullus lanatus HOM05D004358 ORTHO05D004960 1.2e-76 291.2 189 74.6
Aqoxy7G00191 Aquilegia oxysepala HOM05D004358 ORTHO05D004960 1.4e-74 284.3 345 47.0
Mapoly0058s0068 Marchantia polymorpha HOM05D004358 ORTHO05D004960 3.3e-71 273.1 251 55.8
Sp1g04740 Schrenkiella parvula HOM05D004358 ORTHO05D004960 7.3e-71 271.9 359 46.2
Solyc09g083003.1 Solanum lycopersicum HOM05D004358 ORTHO05D004960 2.1e-70 270.4 186 67.2
CBR_g29622 Chara braunii HOM05D004358 ORTHO05D004960 8.1e-70 268.5 251 53.8
Migut.M00111 Erythranthe guttata HOM05D004358 ORTHO05D004960 8.1e-70 268.5 290 52.4
Mapoly0058s0067 Marchantia polymorpha HOM05D004358 ORTHO05D004960 3.4e-68 263.1 247 54.3
SalBow7G1435 Salvia bowleyana HOM05D004358 ORTHO05D004960 1.8e-64 250.8 131 81.7
Psat1g007160 Pisum sativum HOM05D004358 ORTHO05D004960 7.4e-63 245.4 205 61.5
Gohir.A10G133700 Gossypium hirsutum HOM05D004358 ORTHO05D004960 1.4e-58 231.1 273 53.5
CAN.G80.26 Capsicum annuum HOM05D004358 ORTHO05D004960 1.9e-50 204.1 217 50.2
PGSC0003DMG401026906 Solanum tuberosum HOM05D004358 ORTHO05D004960 4.6e-49 199.5 107 84.1
Ca_18838_v3 Cicer arietinum L. HOM05D004358 ORTHO05D004960 1.5e-47 194.5 114 77.2
Haze_27447 Corylus avellana HOM05D004358 ORTHO05D004960 1.9e-47 194.1 235 44.3
Glyma.12G053100 Glycine max HOM05D004358 ORTHO05D004960 3.1e-45 186.8 112 79.5
Sabra07G0103800 Salix brachista HOM05D004358 ORTHO05D004960 6.9e-45 185.7 108 93.5
Cfa026201 Carpinus fangiana HOM05D004358 ORTHO05D004960 2.3e-40 170.6 235 41.3
Pp3c17_17810 Physcomitrium patens HOM05D004358 ORTHO05D004960 3.7e-38 163.3 319 32.6
AagrBONN_evm.TU.Sc2ySwM_368.679 Anthoceros agrestis HOM05D004358 ORTHO05D004960 9.4e-34 148.7 200 41.5
DCAR_028139 Daucus carota HOM05D004358 ORTHO05D004960 1.8e-32 144.4 75 84.0
Mapoly0058s0064 Marchantia polymorpha HOM05D004358 ORTHO05D004960 1.4e-29 134.8 92 65.2
Haze_01519 Corylus avellana HOM05D004358 ORTHO05D004960 3.4e-28 130.2 231 38.5
Cpa.g.sc41.25 Carica papaya HOM05D004358 ORTHO05D004960 2.2e-27 127.5 75 78.7
Cpa.g.sc41.31 Carica papaya HOM05D004358 ORTHO05D004960 5.5e-26 122.9 74 77.0
BcaC07g42101 Brassica carinata HOM05D004358 ORTHO05D004960 1.8e-24 117.9 89 62.9
QL10p048520 Quercus lobata HOM05D004358 ORTHO05D004960 3.9e-24 116.7 235 38.3
PGSC0003DMG402026906 Solanum tuberosum HOM05D004358 ORTHO05D004960 9.7e-23 112.1 154 49.4
Rhsim02G0076400 Rhododendron simsii HOM05D004358 ORTHO05D004960 1.2e-20 105.1 92 54.3
Lj3A203T17 Lonicera japonica HOM05D004358 ORTHO05D004960 2.2e-19 100.9 89 60.7
SalBow1G3505 Salvia bowleyana HOM05D004358 ORTHO05D004960 4.2e-18 96.7 119 48.7
Oeu007466.1 Olea europaea HOM05D004358 ORTHO05D004960 1.2e-17 95.1 153 40.5
BcaC01g05951 Brassica carinata HOM05D004358 ORTHO05D004960 4.8e-14 83.2 143 42.0
Ca_29315_v3 Cicer arietinum L. HOM05D004358 ORTHO05D004960 3.1e-13 80.5 140 32.9
PGSC0003DMG402006099 Solanum tuberosum HOM05D004358 ORTHO05D004960 7.0e-13 79.3 51 68.6
Cre17.g732050 Chlamydomonas reinhardtii HOM05D004358 ORTHO05D004960 5.9e-12 76.3 158 29.7
Gohir.D08G144100 Gossypium hirsutum HOM05D004358 ORTHO05D004960 1.7e-11 74.7 94 48.9
PRCOL_00001550 Prasinoderma coloniale HOM05D004358 ORTHO05D004960 2.7e-09 67.4 133 29.3
Pp3c18_200 Physcomitrium patens HOM05D006570 ORTHO05D008193 1.4e-08 65.1 154 31.2
MCO12G048 Micromonas commoda HOM05D006570 ORTHO05D008193 1.8e-08 64.7 184 27.7
Cre02.g082000 Chlamydomonas reinhardtii HOM05D006570 ORTHO05D008193 5.2e-08 63.2 160 27.5
Thecc.01G203700 Theobroma cacao HOM05D006570 ORTHO05D008193 5.2e-08 63.2 163 28.8
Glyma.15G030650 Glycine max HOM05D004358 ORTHO05D004960 6.8e-08 62.8 96 41.7
Lj3C203G5 Lonicera japonica HOM05D009066 ORTHO05D004960 1.2e-07 62.0 37 73.0
Gohir.D07G093500 Gossypium hirsutum HOM05D006570 ORTHO05D008193 2.0e-07 61.2 152 30.3
Gorai.001G100200 Gossypium raimondii HOM05D006570 ORTHO05D008193 2.0e-07 61.2 152 30.3
Oeu020442.2 Olea europaea HOM05D006570 ORTHO05D008193 2.0e-07 61.2 171 28.7
Ciclev10015195m.g Citrus clementina HOM05D006570 ORTHO05D008193 3.4e-07 60.5 158 28.5
Lalb_Chr10g0100201 Lupinus albus HOM05D006570 ORTHO05D008193 4.4e-07 60.1 154 31.8
Ca_29093_v3 Cicer arietinum L. HOM05D006570 ORTHO05D008193 7.5e-07 59.3 154 27.9
Mapoly0043s0062 Marchantia polymorpha HOM05D006570 ORTHO05D008193 9.8e-07 58.9 158 27.2
Gohir.A07G088500 Gossypium hirsutum HOM05D006570 ORTHO05D008193 2.8e-06 57.4 152 28.3
Thecc.04G185600 Theobroma cacao HOM05D004358 ORTHO05D004960 2.8e-06 57.4 32 81.2
COL.COLO4_19720 Corchorus olitorius HOM05D006570 ORTHO05D008193 4.8e-06 56.6 163 28.2
arahy.Tifrunner.gnm1.ann1.N5JW36 Arachis hypogaea HOM05D006570 ORTHO05D008193 6.3e-06 56.2 136 29.4
CsaV3_6G007600 Cucumis sativus L. HOM05D006570 ORTHO05D008193 6.3e-06 56.2 158 26.6
Phvul.010G109900 Phaseolus vulgaris HOM05D006570 ORTHO05D008193 6.3e-06 56.2 139 28.8
arahy.Tifrunner.gnm1.ann1.L2UBUE Arachis hypogaea HOM05D006570 ORTHO05D008193 8.3e-06 55.8 136 29.4
HanXRQChr16g0508391 Helianthus annuus HOM05D006570 ORTHO05D008193 8.3e-06 55.8 157 28.7


User provided reference genes

Program Settings