Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO367G0514 Selaginella moellendorffii HOM05D004484 ORTHO05D005370 0.0e+00 1377.5 702 100.0
Pp3c22_11100 Physcomitrium patens HOM05D004484 ORTHO05D005370 1.5e-199 700.3 719 51.2
MBI12_g10758_MAGBIO Magnolia biondii HOM05D004484 ORTHO05D005370 5.3e-184 648.7 721 47.4
Prupe.2G145600 Prunus persica HOM05D004484 ORTHO05D005370 5.4e-181 638.6 691 48.9
TWI23G0227 Tripterygium wilfordii HOM05D004484 ORTHO05D005370 2.1e-180 636.7 688 49.1
CiPaw.01G262000 Carya illinoinensis HOM05D004484 ORTHO05D005370 6.0e-180 635.2 691 47.6
TAR629G2468 Trochodendron aralioides HOM05D004484 ORTHO05D005370 3.0e-179 632.9 670 47.6
Aqoxy5G00403 Aquilegia oxysepala HOM05D004484 ORTHO05D005370 5.1e-179 632.1 691 47.2
Lj3g0013484 Lotus japonicus HOM05D004484 ORTHO05D005370 8.7e-179 631.3 677 48.4
Medtr4g023560 Medicago truncatula HOM05D004484 ORTHO05D005370 2.5e-178 629.8 682 48.2
MD07G1121000 Malus domestica HOM05D004484 ORTHO05D005370 4.3e-178 629.0 691 48.3
Thecc.01G376200 Theobroma cacao HOM05D004484 ORTHO05D005370 8.1e-177 624.8 688 47.5
Eucgr.E01418 Eucalyptus grandis HOM05D004484 ORTHO05D005370 1.4e-176 624.0 693 47.5
AagrBONN_evm.TU.Sc2ySwM_368.3373 Anthoceros agrestis HOM05D004484 ORTHO05D005370 3.1e-176 622.9 717 46.7
ECA234G1700 Erigeron canadensis HOM05D004484 ORTHO05D005370 4.0e-176 622.5 682 47.8
Ca_19886_v3 Cicer arietinum L. HOM05D004484 ORTHO05D005370 5.3e-176 622.1 682 47.5
Oeu055487.1 Olea europaea HOM05D004484 ORTHO05D005370 5.3e-176 622.1 687 47.3
SGA_v2.0_scaffold153G37012 Striga asiatica HOM05D004484 ORTHO05D005370 6.9e-176 621.7 695 47.5
Mapoly0129s0012 Marchantia polymorpha HOM05D004484 ORTHO05D005370 1.5e-175 620.5 634 50.8
MSTRG.20748 Avicennia marina HOM05D004484 ORTHO05D005370 3.4e-175 619.4 695 47.5
PSO478G5008 Papaver somniferum HOM05D004484 ORTHO05D005370 4.5e-175 619.0 690 46.1
EL10Ac1g00900 Beta vulgaris HOM05D004484 ORTHO05D005370 7.6e-175 618.2 712 45.6
Nn1g01233 Nelumbo nucifera HOM05D004484 ORTHO05D005370 7.6e-175 618.2 682 47.1
Dinv32377 Davidia involucrata HOM05D004484 ORTHO05D005370 2.9e-174 616.3 691 46.0
Manes.01G265900 Manihot esculenta HOM05D004484 ORTHO05D005370 2.9e-174 616.3 687 47.2
Ca_27059_v3 Cicer arietinum L. HOM05D004484 ORTHO05D005370 3.8e-174 615.9 675 47.7
QL08p052472 Quercus lobata HOM05D004484 ORTHO05D005370 3.8e-174 615.9 696 47.4
Sed0020955 Sechium edule HOM05D004484 ORTHO05D005370 3.8e-174 615.9 700 47.1
PGSC0003DMG400012761 Solanum tuberosum HOM05D004484 ORTHO05D005370 3.8e-174 615.9 705 46.1
Nitab4.5_0000457g0330 Nicotiana tabacum HOM05D004484 ORTHO05D005370 4.9e-174 615.5 713 45.9
CANSAT56G4533 Cannabis sativa HOM05D004484 ORTHO05D005370 8.4e-174 614.8 688 46.7
Psat7g233440 Pisum sativum HOM05D004484 ORTHO05D005370 1.1e-173 614.4 684 47.4
Atru.chr5.309 Acer truncatum HOM05D004484 ORTHO05D005370 2.4e-173 613.2 687 46.6
Lj7A528T57 Lonicera japonica HOM05D004484 ORTHO05D005370 5.5e-173 612.1 701 47.2
Potri.014G069700 Populus trichocarpa HOM05D004484 ORTHO05D005370 9.3e-173 611.3 688 47.1
CAN.G388.13 Capsicum annuum HOM05D004484 ORTHO05D005370 2.1e-172 610.1 708 45.9
CANSAT56G1200 Cannabis sativa HOM05D004484 ORTHO05D005370 7.9e-172 608.2 688 46.2
Hma1.2p1_0086F.1_g044870 Hydrangea macrophylla HOM05D004484 ORTHO05D005370 7.9e-172 608.2 690 46.4
GSVIVG01027610001 Vitis vinifera HOM05D004484 ORTHO05D005370 7.9e-172 608.2 679 47.4
Cc02_g36700 Coffea canephora HOM05D004484 ORTHO05D005370 1.3e-171 607.4 683 47.6
DCAR_015907 Daucus carota HOM05D004484 ORTHO05D005370 3.0e-171 606.3 686 45.6
PGR042G0667 Punica granatum HOM05D004484 ORTHO05D005370 3.0e-171 606.3 691 47.3
Lalb_Chr13g0291731 Lupinus albus HOM05D004484 ORTHO05D005370 5.1e-171 605.5 690 46.5
Sc02g0002590 Simmondsia chinensis HOM05D004484 ORTHO05D005370 8.7e-171 604.7 670 47.6
AUR62004221 Chenopodium quinoa HOM05D004484 ORTHO05D005370 1.1e-170 604.4 717 45.2
Ciclev10019016m.g Citrus clementina HOM05D004484 ORTHO05D005370 1.1e-170 604.4 688 46.5
Peaxi162Scf00021g01723 Petunia axillaris HOM05D004484 ORTHO05D005370 1.1e-170 604.4 711 45.1
CsaV3_3G009680 Cucumis sativus L. HOM05D004484 ORTHO05D005370 1.5e-170 604.0 691 45.4
HanXRQChr16g0520161 Helianthus annuus HOM05D004484 ORTHO05D005370 2.5e-170 603.2 689 47.2
Phvul.002G205800 Phaseolus vulgaris HOM05D004484 ORTHO05D005370 2.5e-170 603.2 687 47.2
Migut.B01635 Erythranthe guttata HOM05D004484 ORTHO05D005370 4.3e-170 602.4 686 46.9
FvH4_7g11900 Fragaria vesca HOM05D004484 ORTHO05D005370 1.6e-169 600.5 686 46.2
FAN01G0628 Fragaria x ananassa HOM05D004484 ORTHO05D005370 1.6e-169 600.5 686 46.2
Haze_16815 Corylus avellana HOM05D004484 ORTHO05D005370 2.1e-169 600.1 744 43.7
Solyc01g091350.4 Solanum lycopersicum HOM05D004484 ORTHO05D005370 8.2e-169 598.2 706 44.6
Sopen01g037090 Solanum pennellii HOM05D004484 ORTHO05D005370 8.2e-169 598.2 706 44.5
BcaB04g17469 Brassica carinata HOM05D004484 ORTHO05D005370 3.1e-168 596.3 691 45.6
VMungo0251G1206 Vigna mungo HOM05D004484 ORTHO05D005370 6.9e-168 595.1 688 45.3
Lsat_1_v5_gn_4_43240 Lactuca sativa HOM05D004484 ORTHO05D005370 1.5e-167 594.0 673 46.1
FAN10G1483 Fragaria x ananassa HOM05D004484 ORTHO05D005370 2.6e-167 593.2 686 46.1
arahy.Tifrunner.gnm1.ann1.V1M046 Arachis hypogaea HOM05D004484 ORTHO05D005370 3.4e-167 592.8 689 46.7
Cpa.g.sc18.115 Carica papaya HOM05D004484 ORTHO05D005370 4.5e-167 592.4 693 45.3
arahy.Tifrunner.gnm1.ann1.6K85L9 Arachis hypogaea HOM05D004484 ORTHO05D005370 5.8e-167 592.0 689 46.7
arahy.Tifrunner.gnm1.ann1.HW1IVJ Arachis hypogaea HOM05D004484 ORTHO05D005370 5.8e-167 592.0 689 46.7
FAN06G1787 Fragaria x ananassa HOM05D004484 ORTHO05D005370 7.6e-167 591.7 686 45.9
FAN06G3319 Fragaria x ananassa HOM05D004484 ORTHO05D005370 7.6e-167 591.7 686 45.9
arahy.Tifrunner.gnm1.ann1.Q9SWB6 Arachis hypogaea HOM05D004484 ORTHO05D005370 1.0e-166 591.3 689 46.4
Aqoxy3G02138 Aquilegia oxysepala HOM05D004484 ORTHO05D005370 2.2e-166 590.1 689 45.3
FAN10G2369 Fragaria x ananassa HOM05D004484 ORTHO05D005370 2.9e-166 589.7 686 45.9
BraSC267t45947Z Brassica rapa HOM05D004484 ORTHO05D005370 4.9e-166 589.0 692 45.1
CSS0036976 Camellia sinensis var. sinensis HOM05D004484 ORTHO05D005370 6.5e-166 588.6 688 46.4
ClCG05G002220 Citrullus lanatus HOM05D004484 ORTHO05D005370 6.5e-166 588.6 692 45.5
Carub.0001s3716 Capsella rubella HOM05D004484 ORTHO05D005370 2.5e-165 586.6 689 46.4
Glyma.05G125700 Glycine max HOM05D004484 ORTHO05D005370 4.2e-165 585.9 687 45.9
C08p05620 Brassica napus HOM05D004484 ORTHO05D005370 7.1e-165 585.1 692 45.2
BolC8t47375H Brassica oleracea HOM05D004484 ORTHO05D005370 1.2e-164 584.3 692 45.4
MELO3C006188.2 Cucumis melo HOM05D004484 ORTHO05D005370 1.2e-164 584.3 660 45.3
Gorai.007G091100 Gossypium raimondii HOM05D004484 ORTHO05D005370 1.2e-164 584.3 691 46.3
Ah.13g073490 Amaranthus hybridus HOM05D004484 ORTHO05D005370 1.6e-164 583.9 715 43.9
CARHR037700 Cardamine hirsuta HOM05D004484 ORTHO05D005370 2.1e-164 583.6 687 46.7
BcaC07g37180 Brassica carinata HOM05D004484 ORTHO05D005370 2.7e-164 583.2 692 45.2
Nitab4.5_0005372g0070 Nicotiana tabacum HOM05D004484 ORTHO05D005370 3.5e-164 582.8 720 43.9
Gohir.A11G080700 Gossypium hirsutum HOM05D004484 ORTHO05D005370 7.9e-164 581.6 691 46.3
Sp1g35020 Schrenkiella parvula HOM05D004484 ORTHO05D005370 7.9e-164 581.6 679 45.5
AT1G48050 Arabidopsis thaliana HOM05D004484 ORTHO05D005370 3.0e-163 579.7 683 45.4
Gohir.D11G085300 Gossypium hirsutum HOM05D004484 ORTHO05D005370 3.9e-163 579.3 691 46.2
AL1G54570 Arabidopsis lyrata HOM05D004484 ORTHO05D005370 4.3e-162 575.9 677 45.6
A08p05330 Brassica napus HOM05D004484 ORTHO05D005370 4.5e-159 565.8 671 44.7
Sabra14G0049400 Salix brachista HOM05D004484 ORTHO05D005370 4.5e-159 565.8 699 44.1
THA.LOC104817247 Tarenaya hassleriana HOM05D004484 ORTHO05D005370 1.4e-157 560.8 690 45.7
Lalb_Chr12g0208261 Lupinus albus HOM05D004484 ORTHO05D005370 2.5e-157 560.1 671 45.0
vmacro13399 Vaccinium macrocarpon HOM05D004484 ORTHO05D005370 8.8e-155 551.6 689 44.3
GSVIVG01027609001 Vitis vinifera HOM05D004484 ORTHO05D005370 6.9e-152 542.0 671 43.8
HPP92_027818 Vanilla planifolia HOM05D004484 ORTHO05D005370 5.9e-151 538.9 680 44.0
SHI13523 Sapria himalayana HOM05D004484 ORTHO05D005370 7.7e-151 538.5 665 45.6
FAN03G1897 Fragaria x ananassa HOM05D004484 ORTHO05D005370 4.2e-149 532.7 690 43.2
AUR62013627 Chenopodium quinoa HOM05D004484 ORTHO05D005370 9.4e-149 531.6 705 42.4
Zm00001eb064930 Zea mays HOM05D004484 ORTHO05D005370 9.4e-149 531.6 667 43.5
TPR.G9845 Trifolium pratense HOM05D004484 ORTHO05D005370 1.2e-148 531.2 715 42.4
Cfa001721 Carpinus fangiana HOM05D004484 ORTHO05D005370 8.8e-147 525.0 590 46.6
Hund27347 Selenicereus undatus HOM05D004484 ORTHO05D005370 1.1e-144 518.1 609 45.8
unitig_749.g13780 Utricularia gibba HOM05D004484 ORTHO05D005370 3.3e-138 496.5 564 46.6
COL.COLO4_07018 Corchorus olitorius HOM05D004484 ORTHO05D005370 3.6e-132 476.5 517 48.0
arahy.Tifrunner.gnm1.ann1.03ZR4A Arachis hypogaea HOM05D004484 ORTHO05D005370 3.7e-129 466.5 699 39.5
arahy.Tifrunner.gnm1.ann1.5WGS6V Arachis hypogaea HOM05D004484 ORTHO05D005370 2.4e-128 463.8 637 41.1
ATR0049G077 Amborella trichopoda HOM05D004484 ORTHO05D005370 4.7e-124 449.5 459 49.2
Hma1.2p1_0086F.1_g044880 Hydrangea macrophylla HOM05D004484 ORTHO05D005370 9.1e-120 435.3 456 48.7
CDE04G3156 Ceratophyllum demersum HOM05D004484 ORTHO05D005370 2.3e-118 430.6 679 37.6
Lj9C569T11 Lonicera japonica HOM05D004484 ORTHO05D005370 2.3e-118 430.6 470 47.9
Potri.002G148200 Populus trichocarpa HOM05D004484 ORTHO05D005370 2.3e-118 430.6 492 47.6
arahy.Tifrunner.gnm1.ann1.5492A7 Arachis hypogaea HOM05D004484 ORTHO05D005370 2.9e-118 430.3 600 40.2
Aa31LG10G5650 Aethionema arabicum HOM05D004484 ORTHO05D005370 3.8e-118 429.9 588 41.8
COL.COLO4_12548 Corchorus olitorius HOM05D004484 ORTHO05D005370 5.2e-115 419.5 708 36.3
Thhalv10011351m.g Eutrema salsugineum HOM05D004484 ORTHO05D005370 2.0e-114 417.5 633 39.2
arahy.Tifrunner.gnm1.ann1.T9R8PC Arachis hypogaea HOM05D004484 ORTHO05D005370 9.8e-114 415.2 670 37.3
PGR119G1536 Punica granatum HOM05D004484 ORTHO05D005370 3.5e-111 406.8 515 44.5
CBR_g30081 Chara braunii HOM05D004484 ORTHO05D005370 7.5e-106 389.0 657 35.3
RcHm_v2.0_Chr1g0350581 Rosa chinensis HOM05D004484 ORTHO05D005370 1.9e-96 357.8 378 47.4
SEGI_20047 Sequoiadendron giganteum HOM05D004484 ORTHO05D005370 1.9e-64 251.5 254 53.5
RcHm_v2.0_Chr1g0350571 Rosa chinensis HOM05D004484 ORTHO05D005370 4.6e-63 246.9 307 44.6
SHI38996 Sapria himalayana HOM05D004484 ORTHO05D005370 7.4e-61 239.6 203 57.1
SHI38095 Sapria himalayana HOM05D004484 ORTHO05D005370 6.4e-57 226.5 190 56.3
Hma1.2p1_0701F.1_g205850 Hydrangea macrophylla HOM05D004484 ORTHO05D005370 5.6e-53 213.4 263 44.5
MCO15G158 Micromonas commoda HOM05D004484 ORTHO05D005370 2.1e-47 194.9 531 30.3
Glyma.06G243967 Glycine max HOM05D004484 ORTHO05D005370 1.3e-36 159.1 142 52.8
arahy.Tifrunner.gnm1.ann1.47H85H Arachis hypogaea HOM05D004484 ORTHO05D005370 7.7e-34 149.8 337 32.3
SEGI_29754 Sequoiadendron giganteum HOM05D004484 ORTHO05D005370 7.2e-32 143.3 116 60.3
Glyma.17G005802 Glycine max HOM05D004484 ORTHO05D005370 8.2e-28 129.8 184 43.5
Carub.0004s0917 Capsella rubella HOM05D004484 ORTHO05D005370 3.1e-27 127.9 281 34.5
Glyma.01G142851 Glycine max HOM05D004484 ORTHO05D005370 3.1e-27 127.9 165 44.8
SHI38094 Sapria himalayana HOM05D004484 ORTHO05D005370 1.2e-26 125.9 214 38.8
TPR.G22633 Trifolium pratense HOM05D004484 ORTHO05D005370 6.5e-25 120.2 91 64.8
CAN.G594.7 Capsicum annuum HOM05D004484 ORTHO05D005370 5.5e-24 117.1 105 54.3
CAN.G205.22 Capsicum annuum HOM05D004484 ORTHO05D005370 9.4e-24 116.3 96 56.2
Hma1.2p1_0170F.1_g075250 Hydrangea macrophylla HOM05D004484 ORTHO05D005370 3.0e-22 111.3 195 35.4
Eucgr.I00725 Eucalyptus grandis HOM05D004484 ORTHO05D005370 4.1e-19 100.9 95 54.7
QL08p052505 Quercus lobata HOM05D004484 ORTHO05D005370 5.9e-18 97.1 157 38.2
SHI38995 Sapria himalayana HOM05D004484 ORTHO05D005370 1.5e-16 92.4 128 40.6
CAN.G388.14 Capsicum annuum HOM05D004484 ORTHO05D005370 1.2e-15 89.4 69 52.2
PRCOL_00002704 Prasinoderma coloniale HOM05D004484 ORTHO05D005370 8.0e-15 86.7 537 24.0
SGA_v2.0_scaffold65G22170 Striga asiatica HOM05D004484 ORTHO05D005370 1.8e-14 85.5 248 29.0
CAN.G279.6 Capsicum annuum HOM05D004484 ORTHO05D005370 2.0e-13 82.0 72 56.9
Cre10.g423800 Chlamydomonas reinhardtii HOM05D004484 ORTHO05D005370 2.6e-13 81.6 532 22.0
Aa31LG10G5660 Aethionema arabicum HOM05D004484 ORTHO05D005370 5.7e-13 80.5 94 42.6
Os03g0856200 Oryza sativa ssp. japonica HOM05D004484 ORTHO05D005370 5.7e-13 80.5 93 41.9
Solyc01g091430.2 Solanum lycopersicum HOM05D004484 ORTHO05D005370 1.6e-10 72.4 105 36.2
Solyc01g091440.4 Solanum lycopersicum HOM05D004484 ORTHO05D005370 2.9e-09 68.2 123 37.4
SGA_v2.0_scaffold172G39032 Striga asiatica HOM05D004484 ORTHO05D005370 6.1e-07 60.5 120 35.0


User provided reference genes

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