Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold33G13369 Striga asiatica HOM05D004747 ORTHO05D006051 5.7e-89 330.9 165 100.0
Migut.H01001 Erythranthe guttata HOM05D004747 ORTHO05D006051 4.3e-60 235.0 157 75.8
SGA_v2.0_scaffold276G46638 Striga asiatica HOM05D004747 ORTHO05D006051 1.8e-58 229.6 199 65.3
Cc07_g09390 Coffea canephora HOM05D004747 ORTHO05D006051 4.0e-58 228.4 157 74.5
unitig_21.g20956 Utricularia gibba HOM05D004747 ORTHO05D006051 2.0e-57 226.1 160 73.8
Lsat_1_v5_gn_2_76601 Lactuca sativa HOM05D004747 ORTHO05D006051 1.3e-56 223.4 157 72.0
Dinv39972 Davidia involucrata HOM05D004747 ORTHO05D006051 2.4e-55 219.2 159 71.7
FvH4_1g13450 Fragaria vesca HOM05D004747 ORTHO05D006051 2.4e-55 219.2 160 70.6
FAN19G0426 Fragaria x ananassa HOM05D004747 ORTHO05D006051 2.4e-55 219.2 160 70.6
vmacro17845 Vaccinium macrocarpon HOM05D004747 ORTHO05D006051 3.2e-55 218.8 160 71.2
FAN23G0552 Fragaria x ananassa HOM05D004747 ORTHO05D006051 4.1e-55 218.4 158 71.5
FAN23G0698 Fragaria x ananassa HOM05D004747 ORTHO05D006051 4.1e-55 218.4 158 71.5
HanXRQChr14g0441201 Helianthus annuus HOM05D004747 ORTHO05D006051 4.1e-55 218.4 157 70.1
GSVIVG01018981001 Vitis vinifera HOM05D004747 ORTHO05D006051 5.4e-55 218.0 157 69.4
RcHm_v2.0_Chr2g0101831 Rosa chinensis HOM05D004747 ORTHO05D006051 7.0e-55 217.6 157 72.0
FAN28G1132 Fragaria x ananassa HOM05D004747 ORTHO05D006051 1.2e-54 216.9 158 70.9
PGR102G2748 Punica granatum HOM05D004747 ORTHO05D006051 1.2e-54 216.9 157 70.1
Oeu007440.1 Olea europaea HOM05D004747 ORTHO05D006051 1.6e-54 216.5 157 70.7
Dinv26824 Davidia involucrata HOM05D004747 ORTHO05D006051 2.0e-54 216.1 159 71.7
MBI16_g37699_MAGBIO Magnolia biondii HOM05D004747 ORTHO05D006051 2.0e-54 216.1 156 71.8
Manes.01G134400 Manihot esculenta HOM05D004747 ORTHO05D006051 2.0e-54 216.1 157 68.8
HanXRQChr07g0192831 Helianthus annuus HOM05D004747 ORTHO05D006051 2.7e-54 215.7 162 68.5
ATR0733G064 Amborella trichopoda HOM05D004747 ORTHO05D006051 3.5e-54 215.3 156 70.5
CANSAT01G3054 Cannabis sativa HOM05D004747 ORTHO05D006051 6.0e-54 214.5 157 70.1
Manes.02G092600 Manihot esculenta HOM05D004747 ORTHO05D006051 6.0e-54 214.5 157 69.4
Ciclev10025502m.g Citrus clementina HOM05D004747 ORTHO05D006051 7.8e-54 214.2 158 69.6
Prupe.7G153200 Prunus persica HOM05D004747 ORTHO05D006051 2.3e-53 212.6 163 67.5
FAN26G3322 Fragaria x ananassa HOM05D004747 ORTHO05D006051 3.0e-53 212.2 160 69.4
Cpa.g.sc337.7 Carica papaya HOM05D004747 ORTHO05D006051 3.9e-53 211.8 158 69.0
Eucgr.H01267 Eucalyptus grandis HOM05D004747 ORTHO05D006051 3.9e-53 211.8 158 68.4
Lj4A199T81 Lonicera japonica HOM05D004747 ORTHO05D006051 3.9e-53 211.8 161 68.9
TAR628G1004 Trochodendron aralioides HOM05D004747 ORTHO05D006051 3.9e-53 211.8 157 71.3
TAR376G1008 Trochodendron aralioides HOM05D004747 ORTHO05D006051 5.0e-53 211.5 157 71.3
MELO3C007821.2 Cucumis melo HOM05D004747 ORTHO05D006051 6.6e-53 211.1 157 70.1
Nitab4.5_0004711g0020 Nicotiana tabacum HOM05D004747 ORTHO05D006051 6.6e-53 211.1 162 69.8
Sc16g0000910 Simmondsia chinensis HOM05D004747 ORTHO05D006051 6.6e-53 211.1 157 68.2
Atru.chr3.560 Acer truncatum HOM05D004747 ORTHO05D006051 1.5e-52 209.9 157 68.8
arahy.Tifrunner.gnm1.ann1.0AQ0IW Arachis hypogaea HOM05D004747 ORTHO05D006051 1.5e-52 209.9 158 70.3
ClCG01G019460 Citrullus lanatus HOM05D004747 ORTHO05D006051 1.9e-52 209.5 157 69.4
CsaV3_6G046180 Cucumis sativus L. HOM05D004747 ORTHO05D006051 1.9e-52 209.5 157 69.4
Hund14148 Selenicereus undatus HOM05D004747 ORTHO05D006051 1.9e-52 209.5 157 69.4
Nitab4.5_0000434g0070 Nicotiana tabacum HOM05D004747 ORTHO05D006051 2.5e-52 209.1 162 69.1
CAN.G358.106 Capsicum annuum HOM05D004747 ORTHO05D006051 5.6e-52 208.0 162 69.1
Thecc.01G037400 Theobroma cacao HOM05D004747 ORTHO05D006051 5.6e-52 208.0 161 67.1
CSS0024014 Camellia sinensis var. sinensis HOM05D004747 ORTHO05D006051 7.3e-52 207.6 162 68.5
ECA238G3955 Erigeron canadensis HOM05D004747 ORTHO05D006051 7.3e-52 207.6 158 67.1
PGSC0003DMG400014893 Solanum tuberosum HOM05D004747 ORTHO05D006051 7.3e-52 207.6 162 68.5
VMungo1215G2053 Vigna mungo HOM05D004747 ORTHO05D006051 7.3e-52 207.6 161 67.1
MD02G1149800 Malus domestica HOM05D004747 ORTHO05D006051 1.2e-51 206.8 158 67.7
Psat4g092040 Pisum sativum HOM05D004747 ORTHO05D006051 1.6e-51 206.5 158 69.0
HPP92_014469 Vanilla planifolia HOM05D004747 ORTHO05D006051 2.1e-51 206.1 149 71.1
Gorai.011G101900 Gossypium raimondii HOM05D004747 ORTHO05D006051 2.8e-51 205.7 160 67.5
Lalb_Chr09g0333571 Lupinus albus HOM05D004747 ORTHO05D006051 2.8e-51 205.7 158 67.1
MD15G1264400 Malus domestica HOM05D004747 ORTHO05D006051 3.6e-51 205.3 158 68.4
Sed0017755 Sechium edule HOM05D004747 ORTHO05D006051 3.6e-51 205.3 157 66.9
Sopen02g030100 Solanum pennellii HOM05D004747 ORTHO05D006051 3.6e-51 205.3 162 68.5
TWI09G1640 Tripterygium wilfordii HOM05D004747 ORTHO05D006051 3.6e-51 205.3 157 69.4
Thhalv10004249m.g Eutrema salsugineum HOM05D004747 ORTHO05D006051 4.7e-51 204.9 158 67.1
Gohir.A10G095200 Gossypium hirsutum HOM05D004747 ORTHO05D006051 4.7e-51 204.9 160 67.5
Glyma.01G175100 Glycine max HOM05D004747 ORTHO05D006051 6.2e-51 204.5 160 66.9
Phvul.002G029300 Phaseolus vulgaris HOM05D004747 ORTHO05D006051 6.2e-51 204.5 162 65.4
TWI53G0963 Tripterygium wilfordii HOM05D004747 ORTHO05D006051 6.2e-51 204.5 157 67.5
arahy.Tifrunner.gnm1.ann1.Q9RGLK Arachis hypogaea HOM05D004747 ORTHO05D006051 8.1e-51 204.1 158 67.7
Sed0005805 Sechium edule HOM05D004747 ORTHO05D006051 8.1e-51 204.1 157 67.5
Gohir.D10G092700 Gossypium hirsutum HOM05D004747 ORTHO05D006051 1.1e-50 203.8 160 66.9
Medtr8g077840 Medicago truncatula HOM05D004747 ORTHO05D006051 1.1e-50 203.8 152 69.1
Nn1g05031 Nelumbo nucifera HOM05D004747 ORTHO05D006051 1.1e-50 203.8 157 69.4
TPR.G34973 Trifolium pratense HOM05D004747 ORTHO05D006051 1.1e-50 203.8 152 69.1
AL5G30830 Arabidopsis lyrata HOM05D004747 ORTHO05D006051 1.4e-50 203.4 158 65.2
Sabra07G0023600 Salix brachista HOM05D004747 ORTHO05D006051 1.4e-50 203.4 157 65.0
Glyma.11G067300 Glycine max HOM05D004747 ORTHO05D006051 1.8e-50 203.0 160 66.2
Peaxi162Scf00515g00430 Petunia axillaris HOM05D004747 ORTHO05D006051 1.8e-50 203.0 162 67.9
CiPaw.01G036600 Carya illinoinensis HOM05D004747 ORTHO05D006051 2.3e-50 202.6 158 65.2
Potri.007G026900 Populus trichocarpa HOM05D004747 ORTHO05D006051 2.3e-50 202.6 157 65.0
AT3G50670 Arabidopsis thaliana HOM05D004747 ORTHO05D006051 3.1e-50 202.2 158 64.6
Ca_22260_v3 Cicer arietinum L. HOM05D004747 ORTHO05D006051 3.1e-50 202.2 152 68.4
Cfa004298 Carpinus fangiana HOM05D000682 ORTHO05D000510 5.2e-50 201.4 158 65.8
Sp2g29940 Schrenkiella parvula HOM05D004747 ORTHO05D006051 5.2e-50 201.4 158 65.8
Solyc02g085420.4 Solanum lycopersicum HOM05D004747 ORTHO05D006051 5.2e-50 201.4 162 68.5
Actinidia19177 Actinidia chinensis HOM05D004747 ORTHO05D006051 6.8e-50 201.1 163 67.5
Carub.0005s1700 Capsella rubella HOM05D004747 ORTHO05D006051 6.8e-50 201.1 158 65.2
AUR62003163 Chenopodium quinoa HOM05D004747 ORTHO05D006051 6.8e-50 201.1 173 63.6
Haze_15104 Corylus avellana HOM05D004747 ORTHO05D006051 6.8e-50 201.1 179 60.9
Duzib264G0087 Durio zibethinus HOM05D004747 ORTHO05D006051 8.9e-50 200.7 159 67.9
CDE03G0295 Ceratophyllum demersum HOM05D004747 ORTHO05D006051 1.2e-49 200.3 156 66.7
CDE04G0203 Ceratophyllum demersum HOM05D004747 ORTHO05D006051 1.2e-49 200.3 156 66.7
Oeu054757.1 Olea europaea HOM05D004747 ORTHO05D006051 1.2e-49 200.3 157 66.9
EL10Ac6g14938 Beta vulgaris HOM05D004747 ORTHO05D006051 1.5e-49 199.9 157 66.2
Sp5g11550 Schrenkiella parvula HOM05D004747 ORTHO05D006051 1.5e-49 199.9 158 65.2
Lalb_Chr05g0212861 Lupinus albus HOM05D004747 ORTHO05D006051 2.6e-49 199.1 158 64.6
Aa31LG1G15300 Aethionema arabicum HOM05D004747 ORTHO05D006051 4.4e-49 198.4 158 64.6
Thhalv10010375m.g Eutrema salsugineum HOM05D004747 ORTHO05D006051 9.8e-49 197.2 158 65.2
Pp3c7_6390 Physcomitrium patens HOM05D004747 ORTHO05D006051 9.8e-49 197.2 160 63.1
Lj4g0010267 Lotus japonicus HOM05D004747 ORTHO05D006051 1.3e-48 196.8 152 65.1
DCAR_025922 Daucus carota HOM05D004747 ORTHO05D006051 1.7e-48 196.4 161 64.0
Aqoxy5G01657 Aquilegia oxysepala HOM05D004747 ORTHO05D006051 2.9e-48 195.7 157 66.2
CiPaw.02G016400 Carya illinoinensis HOM05D004747 ORTHO05D006051 2.9e-48 195.7 158 63.9
Duzib187G1223 Durio zibethinus HOM05D004747 ORTHO05D006051 2.9e-48 195.7 158 65.2
COL.COLO4_22095 Corchorus olitorius HOM05D004747 ORTHO05D006051 4.9e-48 194.9 151 67.5
Mapoly0005s0256 Marchantia polymorpha HOM05D004747 ORTHO05D006051 4.9e-48 194.9 156 63.5
QL06p045737 Quercus lobata HOM05D004747 ORTHO05D006051 8.3e-48 194.1 158 64.6
Potri.005G124300 Populus trichocarpa HOM05D004747 ORTHO05D006051 1.4e-47 193.4 158 62.7
Pp3c11_26490 Physcomitrium patens HOM05D004747 ORTHO05D006051 1.9e-47 193.0 160 61.9
AUR62007983 Chenopodium quinoa HOM05D004747 ORTHO05D006051 2.4e-47 192.6 150 68.0
PSO731G0026 Papaver somniferum HOM05D004747 ORTHO05D006051 3.2e-47 192.2 161 64.0
Lalb_Chr05g0227631 Lupinus albus HOM05D004747 ORTHO05D006051 4.1e-47 191.8 158 63.9
CARHR280960 Cardamine hirsuta HOM05D004747 ORTHO05D006051 5.4e-47 191.4 158 62.7
TWI73G1158 Tripterygium wilfordii HOM05D004747 ORTHO05D006051 7.1e-47 191.0 152 66.4
PSO764G0172 Papaver somniferum HOM05D004747 ORTHO05D006051 1.2e-46 190.3 161 63.4
A09p09800 Brassica napus HOM05D000104 ORTHO05D006241 2.1e-46 189.5 158 63.9
C09p11600 Brassica napus HOM05D000104 ORTHO05D006241 2.1e-46 189.5 158 63.9
BolC9t54053H Brassica oleracea HOM05D004747 ORTHO05D006051 2.1e-46 189.5 158 63.9
BraA09t36627Z Brassica rapa HOM05D000104 ORTHO05D006241 2.1e-46 189.5 158 63.9
BcaB02g09994 Brassica carinata HOM05D000104 ORTHO05D006241 2.7e-46 189.1 158 62.7
A07p17190 Brassica napus HOM05D004747 ORTHO05D006051 1.0e-45 187.2 158 61.4
Rhsim08G0114500 Rhododendron simsii HOM05D004747 ORTHO05D006051 1.0e-45 187.2 238 48.7
DCAR_017262 Daucus carota HOM05D004747 ORTHO05D006051 3.0e-45 185.7 159 64.2
BcaB04g20104 Brassica carinata HOM05D000104 ORTHO05D006241 3.9e-45 185.3 158 62.7
Ah.02g126430 Amaranthus hybridus HOM05D004747 ORTHO05D006051 1.1e-44 183.7 162 62.3
BcaC04g23156 Brassica carinata HOM05D004747 ORTHO05D006051 1.5e-44 183.3 153 64.1
PSO541G4083 Papaver somniferum HOM05D004747 ORTHO05D006051 1.5e-44 183.3 156 63.5
PSO675G8944 Papaver somniferum HOM05D004747 ORTHO05D006051 1.5e-44 183.3 156 63.5
Sabra05G0102100 Salix brachista HOM05D004747 ORTHO05D006051 4.7e-43 178.3 150 60.7
Sc07g0000250 Simmondsia chinensis HOM05D004747 ORTHO05D006051 1.4e-42 176.8 111 76.6
CBR_g28042 Chara braunii HOM05D004747 ORTHO05D006051 3.8e-40 168.7 161 54.7
vmacro12724 Vaccinium macrocarpon HOM05D004747 ORTHO05D006051 4.9e-40 168.3 114 70.2
SMO196G0248 Selaginella moellendorffii HOM05D004747 ORTHO05D006051 2.4e-39 166.0 144 61.1
Os10g0115600 Oryza sativa ssp. japonica HOM05D004747 ORTHO05D006051 7.8e-38 161.0 158 57.0
Zm00001eb224440 Zea mays HOM05D004747 ORTHO05D006051 6.2e-35 151.4 158 57.6
BolC7t43037H Brassica oleracea HOM05D002587 ORTHO05D002778 6.4e-32 141.4 99 66.7
C07p25050 Brassica napus HOM05D004747 ORTHO05D006051 1.1e-31 140.6 194 45.9
BcaC06g34739 Brassica carinata HOM05D004747 ORTHO05D006051 2.4e-31 139.4 99 65.7
arahy.Tifrunner.gnm1.ann1.SH2RA2 Arachis hypogaea HOM05D004747 ORTHO05D006051 7.3e-28 127.9 104 67.3
CSS0048961 Camellia sinensis var. sinensis HOM05D004747 ORTHO05D006051 6.2e-27 124.8 81 74.1
arahy.Tifrunner.gnm1.ann1.SYJW5F Arachis hypogaea HOM05D004747 ORTHO05D006051 4.5e-25 118.6 106 62.3
SMO141G0295 Selaginella moellendorffii HOM05D004747 ORTHO05D006051 1.9e-23 113.2 111 55.0
Lsat_1_v5_gn_6_52801 Lactuca sativa HOM05D004747 ORTHO05D006051 4.2e-23 112.1 68 76.5
Lsat_1_v5_gn_2_39760 Lactuca sativa HOM05D004747 ORTHO05D006051 1.3e-21 107.1 68 73.5
Cfa004294 Carpinus fangiana HOM05D007518 ORTHO05D008168 1.5e-17 93.6 57 73.7
MCO05G091 Micromonas commoda HOM05D004747 ORTHO05D006051 6.2e-11 71.6 116 36.2
Cre16.g656250 Chlamydomonas reinhardtii HOM05D004747 ORTHO05D006051 1.1e-10 70.9 132 34.8
AL3G39430 Arabidopsis lyrata HOM05D004747 ORTHO05D006051 1.4e-07 60.5 42 73.8
TWI39G0421 Tripterygium wilfordii HOM05D004747 ORTHO05D006051 3.2e-07 59.3 42 71.4


User provided reference genes

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